Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0550261 Helianthus annuus HOM05D002694 ORTHO05D002927 5.7e-66 254.2 139 100.0
HanXRQChr04g0113041 Helianthus annuus HOM05D002694 ORTHO05D002927 3.5e-63 245.0 134 100.0
HanXRQChr16g0513871 Helianthus annuus HOM05D002694 ORTHO05D002927 1.0e-54 216.9 137 91.2
HanXRQChr10g0298121 Helianthus annuus HOM05D002694 ORTHO05D002927 3.3e-45 185.3 137 81.0
ECA234G0155 Erigeron canadensis HOM05D002694 ORTHO05D002927 2.1e-44 182.6 137 80.3
Lsat_1_v5_gn_5_105680 Lactuca sativa HOM05D002694 ORTHO05D002927 7.5e-42 174.1 137 75.9
Lj9A303T75 Lonicera japonica HOM05D002694 ORTHO05D002927 3.7e-33 145.2 137 67.9
Dinv19385 Davidia involucrata HOM05D002694 ORTHO05D002927 5.4e-32 141.4 137 65.0
Lj9A303T74 Lonicera japonica HOM05D002694 ORTHO05D002927 2.1e-31 139.4 137 65.7
CSS0021439 Camellia sinensis var. sinensis HOM05D002694 ORTHO05D002927 3.5e-31 138.7 137 65.0
CSS0029367 Camellia sinensis var. sinensis HOM05D002694 ORTHO05D002927 3.5e-31 138.7 137 65.0
DCAR_006697 Daucus carota HOM05D002694 ORTHO05D002927 4.6e-31 138.3 137 63.5
Lj5A254T86 Lonicera japonica HOM05D002694 ORTHO05D002927 1.0e-30 137.1 137 64.2
QL02p099401 Quercus lobata HOM05D002694 ORTHO05D002927 1.0e-30 137.1 135 63.0
Actinidia00199 Actinidia chinensis HOM05D002694 ORTHO05D002927 2.3e-30 136.0 137 63.5
Cfa005502 Carpinus fangiana HOM05D002694 ORTHO05D002927 2.3e-30 136.0 137 62.8
Potri.003G018500 Populus trichocarpa HOM05D002694 ORTHO05D002927 5.1e-30 134.8 137 62.8
TWI59G0386 Tripterygium wilfordii HOM05D002694 ORTHO05D002927 5.1e-30 134.8 135 59.3
Ciclev10000069m.g Citrus clementina HOM05D002694 ORTHO05D002927 8.6e-30 134.0 137 62.8
Sabra03G0010100 Salix brachista HOM05D002694 ORTHO05D002927 2.5e-29 132.5 137 61.3
TPR.G2128 Trifolium pratense HOM05D002694 ORTHO05D002927 3.3e-29 132.1 137 61.3
CiPaw.05G049600 Carya illinoinensis HOM05D002694 ORTHO05D002927 4.3e-29 131.7 137 61.3
FAN04G2388 Fragaria x ananassa HOM05D002694 ORTHO05D002927 4.3e-29 131.7 137 59.9
MD08G1236100 Malus domestica HOM05D002694 ORTHO05D002927 4.3e-29 131.7 137 62.0
Haze_01743 Corylus avellana HOM05D002694 ORTHO05D002927 5.6e-29 131.3 137 61.3
Sabra01G0163900 Salix brachista HOM05D002694 ORTHO05D002927 5.6e-29 131.3 137 62.8
Lalb_Chr20g0123581 Lupinus albus HOM05D002694 ORTHO05D002927 7.3e-29 131.0 137 59.1
TAR376G0808 Trochodendron aralioides HOM05D002694 ORTHO05D002927 7.3e-29 131.0 137 60.6
GSVIVG01022838001 Vitis vinifera HOM05D002694 ORTHO05D002927 7.3e-29 131.0 137 62.8
TPR.G23572 Trifolium pratense HOM05D002694 ORTHO05D002927 9.5e-29 130.6 137 60.6
CANSAT11G2158 Cannabis sativa HOM05D002694 ORTHO05D002927 1.2e-28 130.2 137 61.3
COL.COLO4_11774 Corchorus olitorius HOM05D002694 ORTHO05D002927 1.2e-28 130.2 137 61.3
Eucgr.I02740 Eucalyptus grandis HOM05D002694 ORTHO05D002927 1.2e-28 130.2 141 61.7
FAN18G4351 Fragaria x ananassa HOM05D002694 ORTHO05D002927 1.2e-28 130.2 137 59.9
Cpa.g.sc31.40 Carica papaya HOM05D002694 ORTHO05D002927 1.6e-28 129.8 137 61.3
Duzib052G0561 Durio zibethinus HOM05D002694 ORTHO05D002927 2.1e-28 129.4 137 60.6
MD15G1428100 Malus domestica HOM05D002694 ORTHO05D002927 2.1e-28 129.4 137 61.3
FvH4_5g28950 Fragaria vesca HOM05D002694 ORTHO05D002927 3.6e-28 128.6 137 59.1
FAN08G2300 Fragaria x ananassa HOM05D002694 ORTHO05D002927 3.6e-28 128.6 137 59.1
FAN13G1292 Fragaria x ananassa HOM05D002694 ORTHO05D002927 3.6e-28 128.6 137 59.1
Manes.07G019200 Manihot esculenta HOM05D002694 ORTHO05D002927 4.7e-28 128.3 137 61.3
Rhsim11G0127700 Rhododendron simsii HOM05D002694 ORTHO05D002927 4.7e-28 128.3 137 62.0
Prupe.1G572800 Prunus persica HOM05D002694 ORTHO05D002927 6.2e-28 127.9 137 60.6
Lj6g0015845 Lotus japonicus HOM05D002694 ORTHO05D002927 8.1e-28 127.5 137 58.4
PSO170G3020 Papaver somniferum HOM05D002694 ORTHO05D002927 8.1e-28 127.5 134 57.5
PSO782G4887 Papaver somniferum HOM05D002694 ORTHO05D002927 8.1e-28 127.5 134 57.5
Thecc.02G089100 Theobroma cacao HOM05D002694 ORTHO05D002927 1.1e-27 127.1 137 59.9
TAR628G0910 Trochodendron aralioides HOM05D002694 ORTHO05D002927 1.4e-27 126.7 137 57.7
Oeu036664.1 Olea europaea HOM05D002694 ORTHO05D002927 1.8e-27 126.3 137 58.4
CAN.G798.20 Capsicum annuum HOM05D002694 ORTHO05D002927 4.0e-27 125.2 134 59.0
Psat1g222080 Pisum sativum HOM05D002694 ORTHO05D002927 4.0e-27 125.2 137 57.7
vmacro01749 Vaccinium macrocarpon HOM05D002694 ORTHO05D002927 4.0e-27 125.2 137 61.3
Medtr2g006520 Medicago truncatula HOM05D002694 ORTHO05D002927 6.8e-27 124.4 134 57.5
Duzib132G0043 Durio zibethinus HOM05D002694 ORTHO05D002927 8.9e-27 124.0 137 60.6
Atru.chr3.1571 Acer truncatum HOM05D002694 ORTHO05D002927 1.2e-26 123.6 137 59.9
Atru.chr3.1590 Acer truncatum HOM05D002694 ORTHO05D002927 1.2e-26 123.6 137 59.9
ClCG09G014070 Citrullus lanatus HOM05D002694 ORTHO05D002927 1.2e-26 123.6 137 57.7
Gohir.A13G035700 Gossypium hirsutum HOM05D002694 ORTHO05D002927 1.2e-26 123.6 137 59.9
arahy.Tifrunner.gnm1.ann1.LAND87 Arachis hypogaea HOM05D002694 ORTHO05D002927 1.5e-26 123.2 137 56.9
arahy.Tifrunner.gnm1.ann1.YNH2A3 Arachis hypogaea HOM05D002694 ORTHO05D002927 1.5e-26 123.2 137 56.9
Lalb_Chr15g0090681 Lupinus albus HOM05D002694 ORTHO05D002927 1.5e-26 123.2 137 56.9
PGR142G3862 Punica granatum HOM05D002694 ORTHO05D002927 1.5e-26 123.2 135 57.8
Sed0018888 Sechium edule HOM05D002694 ORTHO05D002927 1.5e-26 123.2 139 57.6
Cc02_g22740 Coffea canephora HOM05D002694 ORTHO05D002927 2.0e-26 122.9 137 60.6
Nn1g08357 Nelumbo nucifera HOM05D002694 ORTHO05D002927 2.0e-26 122.9 137 57.7
Peaxi162Scf00011g00627 Petunia axillaris HOM05D002694 ORTHO05D002927 4.4e-26 121.7 137 57.7
MELO3C014361.2 Cucumis melo HOM05D002694 ORTHO05D002927 5.8e-26 121.3 137 56.9
MBI06_g17221_MAGBIO Magnolia biondii HOM05D002694 ORTHO05D002927 5.8e-26 121.3 137 56.9
Phvul.006G216100 Phaseolus vulgaris HOM05D002694 ORTHO05D002927 5.8e-26 121.3 134 57.5
CSS0003662 Camellia sinensis var. sinensis HOM05D002694 ORTHO05D002927 7.6e-26 120.9 134 57.5
Gohir.D13G034000 Gossypium hirsutum HOM05D002694 ORTHO05D002927 7.6e-26 120.9 137 58.4
Nitab4.5_0001744g0030 Nicotiana tabacum HOM05D002694 ORTHO05D002927 9.9e-26 120.6 130 60.8
GSVIVG01026090001 Vitis vinifera HOM05D002694 ORTHO05D002927 9.9e-26 120.6 137 56.9
Gohir.A03G193100 Gossypium hirsutum HOM05D002694 ORTHO05D002927 1.7e-25 119.8 137 56.9
Nitab4.5_0008546g0030 Nicotiana tabacum HOM05D002694 ORTHO05D002927 2.2e-25 119.4 130 60.0
MSTRG.5220 Avicennia marina HOM05D002694 ORTHO05D002927 2.9e-25 119.0 134 56.7
Gorai.005G242000 Gossypium raimondii HOM05D002694 ORTHO05D002927 2.9e-25 119.0 137 56.2
Gorai.013G038500 Gossypium raimondii HOM05D002694 ORTHO05D002927 3.7e-25 118.6 137 57.7
Migut.N01049 Erythranthe guttata HOM05D002694 ORTHO05D002927 4.9e-25 118.2 140 55.7
SalBow6G7198 Salvia bowleyana HOM05D002694 ORTHO05D002927 8.4e-25 117.5 134 57.5
TWI14G0195 Tripterygium wilfordii HOM05D002694 ORTHO05D002927 1.1e-24 117.1 137 55.5
VMungo0540G2271 Vigna mungo HOM05D002694 ORTHO05D002927 1.1e-24 117.1 134 56.7
Solyc01g103990.3 Solanum lycopersicum HOM05D002694 ORTHO05D002927 1.4e-24 116.7 130 58.5
PGSC0003DMG400023771 Solanum tuberosum HOM05D002694 ORTHO05D002927 1.9e-24 116.3 130 58.5
Sopen01g046390 Solanum pennellii HOM05D002694 ORTHO05D002927 2.4e-24 115.9 130 58.5
CsaV3_6G037510 Cucumis sativus L. HOM05D002694 ORTHO05D002927 3.2e-24 115.5 139 54.0
Glyma.12G170100 Glycine max HOM05D002694 ORTHO05D002927 4.1e-24 115.2 136 55.1
RcHm_v2.0_Chr7g0221251 Rosa chinensis HOM05D002694 ORTHO05D002927 1.2e-23 113.6 137 54.0
Aqoxy5G02647 Aquilegia oxysepala HOM05D002694 ORTHO05D002927 6.0e-23 111.3 130 53.8
Nn5g27493 Nelumbo nucifera HOM05D002694 ORTHO05D002927 6.0e-23 111.3 137 54.7
Potri.004G217800 Populus trichocarpa HOM05D002694 ORTHO05D002927 1.3e-22 110.2 137 56.2
MSTRG.27847 Avicennia marina HOM05D002694 ORTHO05D002927 2.3e-22 109.4 135 55.6
Dinv41760 Davidia involucrata HOM05D002694 ORTHO05D002927 8.6e-22 107.5 130 53.8
Hund27116 Selenicereus undatus HOM05D002694 ORTHO05D002927 9.6e-21 104.0 134 52.2
CDE06G1701 Ceratophyllum demersum HOM05D002694 ORTHO05D002927 1.6e-20 103.2 134 50.7
AUR62023546 Chenopodium quinoa HOM05D002694 ORTHO05D002927 2.8e-20 102.4 130 51.5
Ah.05g178600 Amaranthus hybridus HOM05D002694 ORTHO05D002927 6.2e-20 101.3 130 53.1
CDE08G0876 Ceratophyllum demersum HOM05D002694 ORTHO05D002927 6.2e-20 101.3 134 50.0
Sc01g0002010 Simmondsia chinensis HOM05D002694 ORTHO05D002927 8.1e-20 100.9 137 49.6
Sopen06g023430 Solanum pennellii HOM05D002694 ORTHO05D002927 1.1e-19 100.5 101 58.4
AUR62004598 Chenopodium quinoa HOM05D002694 ORTHO05D002927 1.4e-19 100.1 130 51.5
Solyc06g064910.3 Solanum lycopersicum HOM05D002694 ORTHO05D002927 1.4e-19 100.1 108 55.6
QL12p023736 Quercus lobata HOM05D002694 ORTHO05D002927 1.8e-19 99.8 97 62.9
Nitab4.5_0005772g0050 Nicotiana tabacum HOM05D002694 ORTHO05D002927 3.1e-19 99.0 101 59.4
SGA_v2.0_scaffold92G28183 Striga asiatica HOM05D002694 ORTHO05D002927 4.0e-19 98.6 137 48.9
CAN.G308.29 Capsicum annuum HOM05D002694 ORTHO05D002927 6.8e-19 97.8 101 59.4
Zm00001eb082280 Zea mays HOM05D002694 ORTHO05D002927 6.8e-19 97.8 137 51.1
SGA_v2.0_scaffold11G05950 Striga asiatica HOM05D002694 ORTHO05D002927 1.2e-18 97.1 137 47.4
Lalb_Chr07g0185771 Lupinus albus HOM05D002694 ORTHO05D002927 2.0e-18 96.3 135 49.6
AL1G36490 Arabidopsis lyrata HOM05D002694 ORTHO05D002927 2.6e-18 95.9 137 49.6
AT1G22930 Arabidopsis thaliana HOM05D002694 ORTHO05D002927 2.6e-18 95.9 137 49.6
PSO170G0717 Papaver somniferum HOM05D002694 ORTHO05D002927 2.6e-18 95.9 135 46.7
ATR0697G050 Amborella trichopoda HOM05D002694 ORTHO05D002927 5.8e-18 94.7 109 55.0
EL10Ac1g00138 Beta vulgaris HOM05D002694 ORTHO05D002927 5.8e-18 94.7 137 49.6
PSO017G2635 Papaver somniferum HOM05D002694 ORTHO05D002927 5.8e-18 94.7 135 45.9
CARHR023310 Cardamine hirsuta HOM05D002694 ORTHO05D002927 7.6e-18 94.4 137 48.9
Thhalv10006618m.g Eutrema salsugineum HOM05D002694 ORTHO05D002927 1.3e-17 93.6 137 48.9
CiPaw.08G003200 Carya illinoinensis HOM05D002694 ORTHO05D002927 2.2e-17 92.8 121 48.8
Oeu000112.1 Olea europaea HOM05D002694 ORTHO05D002927 2.2e-17 92.8 137 48.2
Sp1g20390 Schrenkiella parvula HOM05D002694 ORTHO05D002927 2.9e-17 92.4 137 48.2
BcaB07g32290 Brassica carinata HOM05D002694 ORTHO05D002927 3.8e-17 92.0 137 48.2
BcaC05g26199 Brassica carinata HOM05D002694 ORTHO05D002927 3.8e-17 92.0 137 48.2
C05p22070 Brassica napus HOM05D002694 ORTHO05D002927 3.8e-17 92.0 137 48.2
BolC5t30903H Brassica oleracea HOM05D002694 ORTHO05D002927 3.8e-17 92.0 137 48.2
BraA09t39670Z Brassica rapa HOM05D002694 ORTHO05D002927 3.8e-17 92.0 137 48.2
A09p41810 Brassica napus HOM05D002694 ORTHO05D002927 8.4e-17 90.9 137 47.4
Peaxi162Scf00269g01412 Petunia axillaris HOM05D002694 ORTHO05D002927 2.4e-16 89.4 101 53.5
unitig_699.g19869 Utricularia gibba HOM05D002694 ORTHO05D002927 2.4e-16 89.4 137 46.0
Aa31LG7G6940 Aethionema arabicum HOM05D002694 ORTHO05D002927 3.2e-16 89.0 137 47.4
Carub.0001s2243 Capsella rubella HOM05D002694 ORTHO05D002927 4.2e-16 88.6 137 47.4
TWI23G0063 Tripterygium wilfordii HOM05D002694 ORTHO05D002927 4.2e-16 88.6 141 45.4
Os02g0556700 Oryza sativa ssp. japonica HOM05D002694 ORTHO05D002927 9.3e-16 87.4 127 45.7
Oeu004876.1 Olea europaea HOM05D002694 ORTHO05D002927 3.9e-14 82.0 95 56.8
Glyma.08G188000 Glycine max HOM05D002694 ORTHO05D002927 5.1e-14 81.6 93 55.9
HPP92_005674 Vanilla planifolia HOM05D002694 ORTHO05D002927 6.6e-14 81.3 137 42.3
AagrBONN_evm.TU.Sc2ySwM_344.4070 Anthoceros agrestis HOM05D002694 ORTHO05D002927 5.6e-13 78.2 133 44.4
Zm00001eb182010 Zea mays HOM05D002694 ORTHO05D002927 7.3e-13 77.8 124 43.5
Mapoly0114s0005 Marchantia polymorpha HOM05D002694 ORTHO05D002927 9.6e-13 77.4 132 45.5
Manes.10G122812 Manihot esculenta HOM05D002694 ORTHO05D002927 1.3e-12 77.0 137 47.4
SEGI_23513 Sequoiadendron giganteum HOM05D002694 ORTHO05D002927 1.3e-12 77.0 130 43.1
ECA240G4585 Erigeron canadensis HOM05D002694 ORTHO05D002927 6.2e-12 74.7 137 43.8
Aa31LG9G14770 Aethionema arabicum HOM05D002694 ORTHO05D002927 8.1e-12 74.3 105 46.7
AL6G42880 Arabidopsis lyrata HOM05D002694 ORTHO05D002927 1.1e-11 73.9 127 40.2
Pp3c19_2560 Physcomitrium patens HOM05D002694 ORTHO05D002927 3.1e-11 72.4 130 43.8
BcaC04g20963 Brassica carinata HOM05D002694 ORTHO05D002927 5.3e-11 71.6 96 46.9
C09p37480 Brassica napus HOM05D002694 ORTHO05D002927 5.3e-11 71.6 96 46.9
BolC9t56579H Brassica oleracea HOM05D002694 ORTHO05D002927 5.3e-11 71.6 96 46.9
Thhalv10028375m.g Eutrema salsugineum HOM05D002694 ORTHO05D002927 1.2e-10 70.5 99 45.5
Sp6g08390 Schrenkiella parvula HOM05D002694 ORTHO05D002927 1.5e-10 70.1 99 43.4
Carub.0006s2773 Capsella rubella HOM05D002694 ORTHO05D002927 3.4e-10 68.9 127 39.4
Gohir.D02G214100 Gossypium hirsutum HOM05D002694 ORTHO05D002927 3.4e-10 68.9 78 52.6
THA.LOC104816530 Tarenaya hassleriana HOM05D002694 ORTHO05D002927 1.3e-09 67.0 138 37.0
Pp3c19_2580 Physcomitrium patens HOM05D002694 ORTHO05D002927 1.7e-09 66.6 125 44.8
Potri.013G105300 Populus trichocarpa HOM05D002694 ORTHO05D002927 2.9e-09 65.9 73 56.2
Os04g0439100 Oryza sativa ssp. japonica HOM05D002694 ORTHO05D002927 3.8e-09 65.5 89 48.3
Sabra13G0091000 Salix brachista HOM05D002694 ORTHO05D002927 4.6e-07 58.5 73 52.1
A09p29540 Brassica napus HOM05D002694 ORTHO05D002927 6.0e-07 58.2 128 39.1
BraA09t38524Z Brassica rapa HOM05D002694 ORTHO05D002927 6.0e-07 58.2 128 39.1
THA.LOC104813107 Tarenaya hassleriana HOM05D002694 ORTHO05D002927 6.6e-06 54.7 92 43.5


User provided reference genes

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