Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0550221 Helianthus annuus HOM05D007161 ORTHO05D009103 7.6e-38 161.0 161 100.0
ECA246G0920 Erigeron canadensis HOM05D007161 ORTHO05D009103 2.1e-27 126.3 162 75.9
HanXRQChr08g0230491 Helianthus annuus HOM05D007161 ORTHO05D009103 2.5e-25 119.4 162 74.7
Lsat_1_v5_gn_5_22381 Lactuca sativa HOM05D007161 ORTHO05D009103 2.2e-21 106.3 158 70.9
Lj5C102G4 Lonicera japonica HOM05D007161 ORTHO05D009103 2.9e-21 105.9 67 80.6
CSS0009196 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 1.1e-20 104.0 65 83.1
CSS0029825 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 1.1e-20 104.0 65 83.1
Aqoxy3G03679 Aquilegia oxysepala HOM05D007161 ORTHO05D009103 2.5e-20 102.8 65 81.5
DCAR_011565 Daucus carota HOM05D007161 ORTHO05D009103 3.2e-20 102.4 67 77.6
Dinv22772 Davidia involucrata HOM05D007161 ORTHO05D009103 5.5e-20 101.7 65 80.0
Manes.06G083700 Manihot esculenta HOM05D007161 ORTHO05D009103 9.4e-20 100.9 67 77.6
GSVIVG01008106001 Vitis vinifera HOM05D007161 ORTHO05D009103 1.2e-19 100.5 64 79.7
Hund02576 Selenicereus undatus HOM05D007161 ORTHO05D009103 1.6e-19 100.1 67 77.6
Ciclev10022373m.g Citrus clementina HOM05D007161 ORTHO05D009103 2.1e-19 99.8 166 63.3
RcHm_v2.0_Chr7g0183201 Rosa chinensis HOM05D007161 ORTHO05D009103 2.1e-19 99.8 67 79.1
FvH4_5g13740 Fragaria vesca HOM05D007161 ORTHO05D009103 2.7e-19 99.4 67 79.1
FAN18G1870 Fragaria x ananassa HOM05D007161 ORTHO05D009103 2.7e-19 99.4 67 79.1
Potri.015G058600 Populus trichocarpa HOM05D007161 ORTHO05D009103 2.7e-19 99.4 67 74.6
Nn4g23440 Nelumbo nucifera HOM05D007161 ORTHO05D009103 4.7e-19 98.6 67 76.1
PGR083G0667 Punica granatum HOM05D007161 ORTHO05D009103 4.7e-19 98.6 64 75.0
vmacro17616 Vaccinium macrocarpon HOM05D007161 ORTHO05D009103 4.7e-19 98.6 67 77.6
FAN08G2338 Fragaria x ananassa HOM05D007161 ORTHO05D009103 6.1e-19 98.2 67 77.6
MSTRG.9598 Avicennia marina HOM05D007161 ORTHO05D009103 7.9e-19 97.8 66 75.8
FAN13G1189 Fragaria x ananassa HOM05D007161 ORTHO05D009103 7.9e-19 97.8 67 77.6
Nitab4.5_0001485g0090 Nicotiana tabacum HOM05D007161 ORTHO05D009103 7.9e-19 97.8 64 78.1
Solyc03g115020.3 Solanum lycopersicum HOM05D007161 ORTHO05D009103 7.9e-19 97.8 64 76.6
Sopen03g034090 Solanum pennellii HOM05D007161 ORTHO05D009103 7.9e-19 97.8 64 76.6
PGSC0003DMG400024633 Solanum tuberosum HOM05D007161 ORTHO05D009103 7.9e-19 97.8 64 76.6
Rhsim08G0144900 Rhododendron simsii HOM05D007161 ORTHO05D009103 1.0e-18 97.4 67 76.1
TWI81G0640 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 1.0e-18 97.4 159 66.7
CANSAT56G0131 Cannabis sativa HOM05D007161 ORTHO05D009103 1.4e-18 97.1 67 73.1
Prupe.5G206100 Prunus persica HOM05D007161 ORTHO05D009103 1.4e-18 97.1 67 77.6
TAR629G0203 Trochodendron aralioides HOM05D007161 ORTHO05D009103 1.4e-18 97.1 67 74.6
TWI60G0438 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 1.8e-18 96.7 158 68.4
Atru.chr9.557 Acer truncatum HOM05D007161 ORTHO05D009103 2.3e-18 96.3 67 73.1
CDE05G0262 Ceratophyllum demersum HOM05D007161 ORTHO05D009103 3.0e-18 95.9 67 74.6
Cc00_g12110 Coffea canephora HOM05D007161 ORTHO05D009103 3.0e-18 95.9 67 73.1
PSO017G0728 Papaver somniferum HOM05D007161 ORTHO05D009103 3.0e-18 95.9 67 74.6
CAN.G1228.16 Capsicum annuum HOM05D007161 ORTHO05D009103 5.1e-18 95.1 65 75.4
PSO478G3435 Papaver somniferum HOM05D007161 ORTHO05D009103 5.1e-18 95.1 67 74.6
SGA_v2.0_scaffold42G16039 Striga asiatica HOM05D007161 ORTHO05D009103 5.1e-18 95.1 67 74.6
MSTRG.4482 Avicennia marina HOM05D007161 ORTHO05D009103 6.7e-18 94.7 67 74.6
Peaxi162Scf00201g00331 Petunia axillaris HOM05D007161 ORTHO05D009103 6.7e-18 94.7 66 74.2
CiPaw.11G054500 Carya illinoinensis HOM05D007161 ORTHO05D009103 8.8e-18 94.4 64 75.0
Migut.D01637 Erythranthe guttata HOM05D007161 ORTHO05D009103 8.8e-18 94.4 63 79.4
Eucgr.B00604 Eucalyptus grandis HOM05D007161 ORTHO05D009103 8.8e-18 94.4 67 73.1
Nitab4.5_0007356g0010 Nicotiana tabacum HOM05D007161 ORTHO05D009103 8.8e-18 94.4 64 75.0
Oeu017188.1 Olea europaea HOM05D007161 ORTHO05D009103 1.1e-17 94.0 64 76.6
QL10p019814 Quercus lobata HOM05D007161 ORTHO05D009103 1.1e-17 94.0 164 63.4
Duzib084G1357 Durio zibethinus HOM05D007161 ORTHO05D009103 1.5e-17 93.6 64 78.1
Haze_07737 Corylus avellana HOM05D007161 ORTHO05D009103 2.0e-17 93.2 64 75.0
Thhalv10014904m.g Eutrema salsugineum HOM05D007161 ORTHO05D009103 2.0e-17 93.2 67 71.6
Os12g0575000 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 2.0e-17 93.2 66 69.7
Sabra15G0084100 Salix brachista HOM05D007161 ORTHO05D009103 2.0e-17 93.2 64 75.0
SalBow7G4182 Salvia bowleyana HOM05D007161 ORTHO05D009103 2.6e-17 92.8 64 73.4
Gohir.A07G068000 Gossypium hirsutum HOM05D007161 ORTHO05D009103 4.4e-17 92.0 67 79.1
Oeu044879.1 Olea europaea HOM05D007161 ORTHO05D009103 4.4e-17 92.0 64 75.0
Cfa019345 Carpinus fangiana HOM05D007161 ORTHO05D009103 9.7e-17 90.9 64 73.4
Gohir.D07G072600 Gossypium hirsutum HOM05D007161 ORTHO05D009103 9.7e-17 90.9 67 77.6
Gorai.001G076800 Gossypium raimondii HOM05D007161 ORTHO05D009103 9.7e-17 90.9 67 77.6
Lj1g0027416 Lotus japonicus HOM05D007161 ORTHO05D009103 9.7e-17 90.9 67 74.6
arahy.Tifrunner.gnm1.ann1.N0KAAL Arachis hypogaea HOM05D007161 ORTHO05D009103 1.3e-16 90.5 67 73.1
MD06G1225900 Malus domestica HOM05D007161 ORTHO05D009103 1.7e-16 90.1 67 73.1
ClCG04G011740 Citrullus lanatus HOM05D007161 ORTHO05D009103 2.2e-16 89.7 67 74.6
MELO3C002036.2 Cucumis melo HOM05D007161 ORTHO05D009103 2.8e-16 89.4 67 73.1
CsaV3_1G006050 Cucumis sativus L. HOM05D007161 ORTHO05D009103 2.8e-16 89.4 67 73.1
BcaB01g05681 Brassica carinata HOM05D007161 ORTHO05D009103 3.7e-16 89.0 67 68.7
A03p03560 Brassica napus HOM05D007161 ORTHO05D009103 3.7e-16 89.0 67 68.7
BraA03t09706Z Brassica rapa HOM05D007161 ORTHO05D009103 3.7e-16 89.0 67 68.7
Glyma.04G161600 Glycine max HOM05D007161 ORTHO05D009103 3.7e-16 89.0 64 75.0
MD14G1212800 Malus domestica HOM05D007161 ORTHO05D009103 3.7e-16 89.0 65 72.3
Medtr3g026020 Medicago truncatula HOM05D007161 ORTHO05D009103 3.7e-16 89.0 64 71.9
Phvul.009G202100 Phaseolus vulgaris HOM05D007161 ORTHO05D009103 3.7e-16 89.0 64 73.4
Sed0004238 Sechium edule HOM05D007161 ORTHO05D009103 3.7e-16 89.0 67 73.1
ATR0177G008 Amborella trichopoda HOM05D007161 ORTHO05D009103 4.8e-16 88.6 67 68.7
arahy.Tifrunner.gnm1.ann1.KM320G Arachis hypogaea HOM05D007161 ORTHO05D009103 4.8e-16 88.6 67 70.1
C03p04010 Brassica napus HOM05D007161 ORTHO05D009103 6.3e-16 88.2 67 68.7
Sp6g34900 Schrenkiella parvula HOM05D007161 ORTHO05D009103 6.3e-16 88.2 67 67.2
BcaB01g05640 Brassica carinata HOM05D007161 ORTHO05D009103 1.1e-15 87.4 67 68.7
BolC3t12938H Brassica oleracea HOM05D007161 ORTHO05D009103 1.1e-15 87.4 67 68.7
COL.COLO4_24339 Corchorus olitorius HOM05D007161 ORTHO05D009103 1.1e-15 87.4 67 73.1
Thecc.03G103000 Theobroma cacao HOM05D007161 ORTHO05D009103 1.1e-15 87.4 67 73.1
Carub.0006s0694 Capsella rubella HOM05D007161 ORTHO05D009103 1.4e-15 87.0 67 67.2
AT5G08050 Arabidopsis thaliana HOM05D007161 ORTHO05D009103 1.8e-15 86.7 67 65.7
AUR62008547 Chenopodium quinoa HOM05D007161 ORTHO05D009103 1.8e-15 86.7 63 71.4
AL6G18400 Arabidopsis lyrata HOM05D007161 ORTHO05D009103 3.1e-15 85.9 67 65.7
THA.LOC104801155 Tarenaya hassleriana HOM05D007161 ORTHO05D009103 3.1e-15 85.9 67 67.2
AUR62021546 Chenopodium quinoa HOM05D007161 ORTHO05D009103 4.1e-15 85.5 63 69.8
Zm00001eb029520 Zea mays HOM05D007161 ORTHO05D009103 4.1e-15 85.5 66 66.7
CARHR205130 Cardamine hirsuta HOM05D007161 ORTHO05D009103 5.3e-15 85.1 67 67.2
Ca_14363_v3 Cicer arietinum L. HOM05D007161 ORTHO05D009103 5.3e-15 85.1 64 71.9
Psat5g207080 Pisum sativum HOM05D007161 ORTHO05D009103 5.3e-15 85.1 63 73.0
Aa31LG3G18490 Aethionema arabicum HOM05D007161 ORTHO05D009103 6.9e-15 84.7 67 64.2
Ah.02g114100 Amaranthus hybridus HOM05D007161 ORTHO05D009103 6.9e-15 84.7 64 70.3
CDE02G4042 Ceratophyllum demersum HOM05D005465 ORTHO05D006612 6.9e-15 84.7 66 63.6
Sc11g0004490 Simmondsia chinensis HOM05D007161 ORTHO05D009103 6.9e-15 84.7 66 66.7
Glyma.06G204200 Glycine max HOM05D007161 ORTHO05D009103 1.2e-14 84.0 64 71.9
SEGI_08112 Sequoiadendron giganteum HOM05D007161 ORTHO05D009103 1.2e-14 84.0 67 65.7
TPR.G12153 Trifolium pratense HOM05D007161 ORTHO05D009103 1.2e-14 84.0 64 70.3
EL10Ac5g11145 Beta vulgaris HOM05D007161 ORTHO05D009103 2.6e-14 82.8 64 70.3
Lalb_Chr12g0199331 Lupinus albus HOM05D007161 ORTHO05D009103 4.5e-14 82.0 67 65.7
Mapoly0107s0029 Marchantia polymorpha HOM05D007161 ORTHO05D009103 7.2e-12 74.7 67 64.2
Pp3c1_19210 Physcomitrium patens HOM05D007161 ORTHO05D009103 9.4e-12 74.3 67 62.7
Os11g0460900 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 2.1e-11 73.2 65 60.0
SMO139G0085 Selaginella moellendorffii HOM05D007161 ORTHO05D009103 2.7e-11 72.8 67 62.7
AagrBONN_evm.TU.Sc2ySwM_344.2890 Anthoceros agrestis HOM05D007161 ORTHO05D009103 6.1e-11 71.6 67 61.2
Peaxi162Scf00009g00010 Petunia axillaris HOM05D007161 ORTHO05D009103 8.8e-10 67.8 54 63.0


User provided reference genes

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