Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 5.3e-125 451.1 233 100.0
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 7.3e-98 360.9 232 81.5
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 6.2e-89 331.3 241 73.9
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 1.2e-87 327.0 233 73.8
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 3.0e-83 312.4 236 71.6
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 1.6e-81 306.6 234 70.9
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 4.0e-80 302.0 233 67.8
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 8.9e-80 300.8 237 72.6
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 3.4e-79 298.9 234 68.8
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 4.4e-79 298.5 227 69.2
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 9.9e-79 297.4 234 68.8
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 9.9e-79 297.4 233 69.5
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 1.7e-78 296.6 235 67.2
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 2.2e-78 296.2 233 67.0
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 2.9e-78 295.8 231 68.8
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 8.4e-78 294.3 235 65.1
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 8.4e-78 294.3 233 63.9
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 8.4e-78 294.3 234 67.5
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 8.4e-78 294.3 235 66.0
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 8.4e-78 294.3 233 66.5
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 1.1e-77 293.9 235 64.3
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 1.4e-77 293.5 233 66.1
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.9e-77 293.1 233 68.2
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 1.9e-77 293.1 235 64.3
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 1.2e-76 290.4 233 66.1
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 1.2e-76 290.4 226 67.3
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 1.6e-76 290.0 234 65.8
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 2.1e-76 289.7 226 67.7
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 2.1e-76 289.7 235 64.3
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 2.7e-76 289.3 234 67.1
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 4.6e-76 288.5 237 64.6
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 4.6e-76 288.5 235 63.8
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 6.0e-76 288.1 236 66.9
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 6.0e-76 288.1 235 64.7
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 7.8e-76 287.7 234 64.5
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 7.8e-76 287.7 238 65.1
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.7e-75 286.6 233 65.2
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 2.3e-75 286.2 266 58.6
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 3.0e-75 285.8 226 65.9
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 3.9e-75 285.4 236 64.4
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 5.1e-75 285.0 235 66.8
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 5.1e-75 285.0 234 64.1
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 1.1e-74 283.9 234 65.4
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.5e-74 283.5 234 65.8
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 1.5e-74 283.5 234 65.0
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 1.9e-74 283.1 234 67.5
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.9e-74 283.1 235 66.4
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.9e-74 283.1 235 66.4
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 3.3e-74 282.3 243 64.6
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 3.3e-74 282.3 234 60.7
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 5.6e-74 281.6 236 65.7
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 9.6e-74 280.8 234 65.8
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 9.6e-74 280.8 236 66.5
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 1.6e-73 280.0 239 62.3
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 1.6e-73 280.0 234 63.7
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 2.8e-73 279.3 235 66.0
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 2.8e-73 279.3 234 63.7
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 4.7e-73 278.5 243 64.2
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 1.4e-72 276.9 235 63.0
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 1.4e-72 276.9 237 65.4
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 1.4e-72 276.9 234 64.1
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 1.8e-72 276.6 235 63.0
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 1.8e-72 276.6 234 64.5
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 2.4e-72 276.2 235 64.7
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 4.0e-72 275.4 260 60.8
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 5.2e-72 275.0 234 61.1
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 6.9e-72 274.6 217 66.4
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 6.9e-72 274.6 231 64.5
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 6.9e-72 274.6 236 65.7
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.2e-71 273.9 267 59.2
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 1.5e-71 273.5 234 64.5
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 2.6e-71 272.7 231 64.1
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 4.4e-71 271.9 236 62.3
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 4.4e-71 271.9 207 69.1
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 4.4e-71 271.9 235 61.3
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 4.4e-71 271.9 267 57.7
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 5.8e-71 271.6 234 61.5
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 7.6e-71 271.2 234 60.7
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 1.3e-70 270.4 267 57.3
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 1.7e-70 270.0 230 62.6
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 2.2e-70 269.6 234 63.2
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.9e-70 269.2 235 60.9
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 1.4e-69 266.9 228 64.9
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 1.9e-69 266.5 238 59.2
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 1.9e-69 266.5 238 59.2
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 1.9e-69 266.5 236 63.6
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 2.4e-69 266.2 237 62.0
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 3.2e-69 265.8 232 61.6
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 4.2e-69 265.4 232 62.9
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 5.4e-69 265.0 234 60.3
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 7.1e-69 264.6 232 62.1
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 9.3e-69 264.2 234 59.0
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 2.1e-68 263.1 234 59.0
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 2.7e-68 262.7 232 59.1
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 2.7e-68 262.7 240 60.8
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 6.0e-68 261.5 230 63.0
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 1.0e-67 260.8 224 62.5
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 1.0e-67 260.8 237 58.2
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 1.0e-67 260.8 164 80.5
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 1.3e-67 260.4 234 59.0
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.0e-67 259.2 217 62.7
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 5.1e-67 258.5 232 60.8
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 1.1e-66 257.3 224 62.5
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 1.1e-66 257.3 224 62.5
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 1.9e-66 256.5 194 70.1
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 2.5e-66 256.1 230 61.3
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 3.3e-66 255.8 234 62.0
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 4.3e-66 255.4 234 56.0
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 5.6e-66 255.0 221 62.4
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 5.6e-66 255.0 221 62.4
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 1.3e-65 253.8 231 61.0
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 1.3e-65 253.8 234 58.5
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 1.6e-65 253.4 220 64.1
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 4.8e-65 251.9 239 59.0
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.4e-64 250.4 176 75.0
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 7.9e-60 234.6 241 55.6
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 6.7e-59 231.5 205 61.0
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 8.7e-59 231.1 238 53.8
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 1.9e-58 229.9 167 68.3
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 2.8e-57 226.1 190 66.3
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 8.1e-57 224.6 233 56.2
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 1.1e-56 224.2 227 56.4
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 7.9e-52 208.0 233 50.2
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 3.0e-51 206.1 157 69.4
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 3.7e-49 199.1 252 54.4
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 6.2e-49 198.4 141 70.2
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 6.9e-48 194.9 234 48.7
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 7.6e-47 191.4 237 47.7
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 4.9e-46 188.7 169 60.4
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 9.3e-45 184.5 235 46.0
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 4.3e-42 175.6 136 65.4
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 3.7e-41 172.6 125 67.2
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 3.8e-38 162.5 112 78.6
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 3.0e-35 152.9 234 39.3
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 3.3e-34 149.4 242 38.4
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 9.7e-34 147.9 180 51.7
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 3.2e-29 132.9 131 56.5
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.2e-28 131.0 80 77.5
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 3.6e-28 129.4 148 52.0
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.9e-27 125.9 120 57.5
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.1e-26 124.4 120 57.5
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 2.0e-26 123.6 119 57.1
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 3.3e-26 122.9 155 49.0
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.8e-24 117.1 119 52.1
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 1.2e-20 104.4 120 49.2
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 1.2e-20 104.4 120 49.2
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 1.2e-20 104.4 120 49.2
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 1.8e-16 90.5 116 52.6
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 2.9e-14 83.2 107 47.7
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 2.9e-14 83.2 250 28.4
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 5.0e-14 82.4 192 32.8
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 1.9e-13 80.5 102 44.1
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.0e-11 74.7 59 69.5
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 3.3e-10 69.7 72 56.9
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 7.0e-08 62.0 44 63.6
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 4.5e-07 59.3 127 33.1
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 4.5e-07 59.3 35 82.9
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 2.9e-06 56.6 114 35.1
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 3.8e-06 56.2 132 32.6
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 5.0e-06 55.8 131 34.4
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 5.0e-06 55.8 131 34.4
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 5.0e-06 55.8 131 34.4
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 5.0e-06 55.8 131 34.4
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 6.5e-06 55.5 140 30.0
SMO361G0571 Selaginella moellendorffii HOM05D018282 ORTHO05D005223 6.5e-06 55.5 54 53.7
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 8.5e-06 55.1 114 34.2
Cre10.g443650 Chlamydomonas reinhardtii HOM05D004631 ORTHO05D005223 8.5e-06 55.1 152 32.2
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 8.5e-06 55.1 114 32.5
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 8.5e-06 55.1 118 33.1


User provided reference genes

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