Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 0.0e+00 1674.8 852 100.0
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 0.0e+00 1196.8 886 72.8
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 0.0e+00 1100.9 924 66.5
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 3.0e-306 1055.0 876 66.8
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 4.3e-265 918.3 885 55.3
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 1.1e-260 903.7 882 55.6
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 7.1e-260 901.0 881 56.1
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 1.3e-258 896.7 879 55.5
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 8.7e-258 894.0 887 55.1
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 9.0e-255 884.0 880 55.0
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 2.0e-254 882.9 917 52.8
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 2.0e-254 882.9 865 54.6
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 4.5e-254 881.7 749 62.3
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 1.4e-252 876.7 891 54.2
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 7.2e-252 874.4 879 53.6
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 1.2e-251 873.6 872 54.6
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 3.0e-250 869.0 865 53.8
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 1.9e-249 866.3 867 52.4
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 7.4e-249 864.4 878 53.3
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 2.8e-248 862.4 881 53.5
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 4.1e-247 858.6 878 52.3
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 1.2e-246 857.1 871 53.6
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.5e-246 856.7 878 52.8
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 1.5e-246 856.7 878 52.5
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 1.5e-246 856.7 879 52.1
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 3.4e-246 855.5 880 53.1
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 1.4e-244 850.1 874 52.7
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 1.9e-244 849.7 839 54.0
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 3.2e-244 849.0 870 51.6
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 9.4e-244 847.4 870 51.4
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 9.4e-244 847.4 870 51.5
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 7.4e-241 837.8 881 50.4
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.3e-239 831.6 881 50.7
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 2.0e-238 829.7 881 49.9
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 1.7e-237 826.6 880 49.8
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 2.2e-237 826.2 880 50.8
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.6e-235 818.9 885 50.3
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 4.5e-230 802.0 882 49.1
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 5.0e-229 798.5 879 49.9
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 4.2e-228 795.4 874 49.8
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 9.4e-228 794.3 887 48.8
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.6e-227 792.3 887 48.6
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 1.1e-225 787.3 738 55.0
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 5.7e-225 785.0 946 46.9
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.7e-224 783.5 877 48.7
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 1.9e-220 770.0 834 49.4
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 4.2e-220 768.8 881 49.3
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 1.2e-219 767.3 877 50.5
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 2.7e-219 766.1 881 49.5
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 6.8e-218 761.5 884 46.8
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 1.7e-216 756.9 909 46.9
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 6.3e-216 755.0 885 47.7
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 1.4e-215 753.8 885 47.9
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 3.1e-215 752.7 885 47.5
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 3.1e-215 752.7 934 45.7
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 9.1e-215 751.1 891 48.0
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 1.2e-214 750.7 884 47.2
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 1.6e-214 750.4 892 47.8
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 1.9e-212 743.4 885 47.5
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 8.8e-210 734.6 900 45.9
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 1.7e-208 730.3 866 46.7
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 9.2e-207 724.5 844 48.5
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 3.5e-206 722.6 876 45.2
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 7.7e-206 721.5 875 43.9
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 1.3e-205 720.7 897 45.5
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 2.3e-205 719.9 645 60.0
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 2.9e-205 719.5 897 44.9
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 1.1e-204 717.6 930 45.6
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 1.1e-204 717.6 694 54.2
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 4.7e-203 712.2 887 46.4
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 2.3e-202 709.9 878 44.6
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.2e-201 707.6 845 48.9
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 3.7e-200 702.6 879 43.3
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 5.9e-198 695.3 884 45.6
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 2.8e-195 686.4 693 52.5
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.4e-194 684.1 854 45.0
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 4.0e-194 682.6 831 46.5
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 7.5e-193 678.3 871 42.3
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 9.8e-193 677.9 900 44.8
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 1.3e-192 677.6 877 42.1
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 3.7e-192 676.0 878 42.4
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 4.9e-192 675.6 883 42.1
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 8.3e-192 674.9 877 42.2
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 1.1e-191 674.5 877 41.8
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 3.2e-191 672.9 877 41.5
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.0e-189 667.9 905 43.9
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 2.1e-187 660.2 879 43.5
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.8e-186 657.1 877 42.8
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 1.1e-183 647.9 883 42.7
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 2.4e-183 646.7 889 42.4
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 1.6e-182 644.0 727 49.5
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 5.6e-180 635.6 700 49.7
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 1.2e-177 627.9 839 42.8
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 1.2e-177 627.9 726 47.2
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 7.6e-177 625.2 873 41.4
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 2.9e-176 623.2 883 41.2
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.8e-176 622.9 857 42.6
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 2.4e-170 603.6 699 49.1
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 4.0e-170 602.8 864 41.4
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.7e-165 587.4 686 49.6
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.5e-164 584.3 874 39.8
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.9e-156 557.4 625 49.3
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 1.7e-152 544.3 878 40.2
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 3.8e-152 543.1 680 44.0
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 1.9e-148 530.8 633 48.5
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 1.1e-146 525.0 665 44.5
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 1.8e-141 507.7 878 36.2
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 3.6e-126 456.8 895 35.5
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.0e-125 455.3 747 37.3
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 2.2e-123 447.6 785 36.9
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 2.9e-120 437.2 733 39.8
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 5.9e-113 412.9 551 42.6
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 5.2e-109 399.8 689 36.4
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 5.7e-108 396.4 542 39.7
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 6.5e-104 382.9 262 73.7
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 3.7e-99 367.1 593 37.6
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 2.8e-94 350.9 240 72.9
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 8.0e-94 349.4 233 73.8
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 1.3e-88 332.0 944 28.2
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.1e-86 324.7 240 66.2
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 4.4e-84 317.0 724 30.8
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.7e-81 307.8 939 27.7
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.7e-81 307.8 939 27.7
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 3.5e-81 307.4 196 79.6
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 1.5e-79 302.0 798 30.8
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 5.6e-79 300.1 391 43.7
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 8.9e-77 292.7 191 75.9
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 1.1e-69 269.2 199 66.3
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 1.8e-69 268.5 238 63.0
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 8.9e-69 266.2 191 68.1
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 1.7e-67 261.9 179 74.9
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 6.6e-64 250.0 531 33.0
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 6.2e-62 243.4 188 65.4
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 1.5e-60 238.8 768 27.5
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 2.4e-58 231.5 348 39.9
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.1e-55 222.6 266 48.1
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.6e-54 218.8 330 40.3
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 1.2e-52 212.6 143 82.5
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 6.4e-51 206.8 324 37.7
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.1e-50 206.1 196 55.6
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 3.5e-49 201.1 134 73.9
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 6.0e-49 200.3 210 49.0
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 1.5e-44 185.7 233 44.6
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 5.6e-39 167.2 221 41.6
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 9.9e-36 156.4 155 49.0
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 2.9e-35 154.8 108 64.8
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 3.8e-35 154.5 212 40.1
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.5e-33 147.9 234 38.9
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 9.0e-29 133.3 84 81.0
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 2.7e-25 121.7 96 72.9
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.3e-24 118.6 281 30.2
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.4e-21 109.4 103 57.3
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 4.1e-21 107.8 196 34.7
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 4.1e-21 107.8 88 56.8
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 1.5e-20 105.9 87 56.3
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 1.5e-20 105.9 181 36.5
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 7.7e-20 103.6 449 24.1
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 7.9e-17 93.6 101 47.5
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 2.8e-14 85.1 115 34.8
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 2.7e-09 68.6 182 27.5
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 3.6e-09 68.2 50 62.0
SHI10296 Sapria himalayana HOM05D000002 ORTHO05D000001 1.7e-06 59.3 78 39.7


User provided reference genes

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