Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 2.7e-113 412.1 226 100.0
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 2.8e-78 295.8 235 69.8
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 2.6e-76 289.3 229 70.3
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 7.6e-76 287.7 239 67.4
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 7.6e-76 287.7 239 67.4
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 2.2e-75 286.2 239 67.4
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 3.2e-74 282.3 227 71.8
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 3.2e-74 282.3 231 73.2
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 7.1e-74 281.2 186 83.3
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 2.1e-73 279.6 245 65.7
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 6.0e-73 278.1 236 66.9
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 1.3e-72 276.9 236 66.5
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 5.1e-72 275.0 236 70.8
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 1.1e-71 273.9 231 66.7
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.5e-71 272.7 235 66.8
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 5.6e-71 271.6 244 64.8
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 5.6e-71 271.6 270 59.3
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.3e-70 270.4 235 66.4
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 2.8e-70 269.2 228 68.4
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 2.8e-70 269.2 229 71.6
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 1.4e-69 266.9 228 67.5
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 1.8e-69 266.5 236 69.1
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 3.1e-69 265.8 232 64.2
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 4.0e-69 265.4 237 67.9
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 6.9e-69 264.6 236 68.2
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 6.9e-69 264.6 231 68.8
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 6.9e-69 264.6 231 68.8
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 1.5e-68 263.5 234 67.5
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 2.6e-68 262.7 239 64.9
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 3.4e-68 262.3 233 68.7
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 4.5e-68 261.9 232 70.7
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 4.5e-68 261.9 231 69.3
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 5.8e-68 261.5 232 67.7
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.3e-67 260.4 231 68.8
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 3.8e-67 258.8 232 67.7
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 8.4e-67 257.7 233 69.5
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 1.1e-66 257.3 232 68.1
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 1.1e-66 257.3 228 68.0
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 1.4e-66 256.9 233 69.5
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 1.9e-66 256.5 237 67.1
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 3.2e-66 255.8 238 66.4
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 4.2e-66 255.4 234 66.2
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 1.2e-65 253.8 235 62.6
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 1.2e-65 253.8 185 75.7
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 1.6e-65 253.4 239 66.1
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 6.0e-65 251.5 182 79.1
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 7.9e-65 251.1 234 65.4
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 7.9e-65 251.1 229 66.8
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 1.0e-64 250.8 225 67.6
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 1.3e-64 250.4 238 66.4
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 1.8e-64 250.0 245 64.9
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 2.3e-64 249.6 177 77.4
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 3.0e-64 249.2 238 65.1
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 3.0e-64 249.2 232 68.1
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 3.9e-64 248.8 232 67.2
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 6.7e-64 248.1 235 63.8
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 6.7e-64 248.1 225 67.1
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 8.7e-64 247.7 235 66.0
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 1.1e-63 247.3 225 67.1
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 1.9e-63 246.5 231 62.8
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 2.5e-63 246.1 271 60.1
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 4.3e-63 245.4 185 75.7
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 5.6e-63 245.0 236 58.9
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 5.6e-63 245.0 258 60.5
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 7.4e-63 244.6 235 63.4
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 1.3e-62 243.8 215 67.9
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.6e-62 243.4 224 62.1
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 3.7e-62 242.3 187 71.7
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 4.8e-62 241.9 231 62.3
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 6.2e-62 241.5 234 64.5
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 6.2e-62 241.5 234 64.5
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 8.1e-62 241.1 234 65.0
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 8.1e-62 241.1 237 62.9
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 8.1e-62 241.1 212 68.4
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 8.1e-62 241.1 212 69.8
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 1.1e-61 240.7 235 65.5
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 1.1e-61 240.7 229 65.1
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 1.4e-61 240.4 168 81.0
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 3.1e-61 239.2 235 65.5
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 4.0e-61 238.8 249 55.8
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 5.3e-61 238.4 237 64.1
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 5.3e-61 238.4 227 66.1
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 6.9e-61 238.0 235 65.1
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 6.9e-61 238.0 179 77.1
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 6.9e-61 238.0 233 63.9
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 1.5e-60 236.9 244 57.0
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 3.4e-60 235.7 181 75.7
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 1.0e-59 234.2 237 62.4
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 1.3e-59 233.8 236 63.6
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 3.8e-59 232.3 171 78.9
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 3.8e-59 232.3 212 61.8
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 6.5e-59 231.5 246 55.3
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.9e-58 229.9 233 62.2
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.9e-58 229.9 233 62.2
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 7.9e-57 224.6 182 72.5
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 8.7e-56 221.1 239 53.1
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.6e-54 216.9 305 47.2
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 4.1e-53 212.2 182 69.2
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 4.1e-53 212.2 181 66.3
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 1.2e-52 210.7 152 77.0
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 2.0e-52 209.9 193 64.8
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 1.3e-51 207.2 249 57.4
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 3.8e-51 205.7 169 66.9
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 1.2e-49 200.7 236 54.2
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 6.1e-49 198.4 133 76.7
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 1.5e-47 193.7 179 60.3
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 2.4e-45 186.4 194 53.6
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.9e-43 179.5 232 53.9
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.5e-42 176.4 129 80.6
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 2.5e-39 166.4 144 59.7
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 6.3e-38 161.8 128 65.6
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 7.7e-36 154.8 181 49.2
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 7.2e-34 148.3 101 73.3
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 6.1e-33 145.2 261 44.4
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 6.1e-33 145.2 101 71.3
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 3.9e-32 142.5 101 70.3
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 9.7e-31 137.9 94 72.3
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.2e-28 131.0 213 44.1
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 3.5e-28 129.4 149 51.0
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 3.5e-28 129.4 181 44.2
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 2.7e-25 119.8 119 52.9
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 4.7e-25 119.0 237 37.6
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 1.5e-23 114.0 79 67.1
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.5e-23 114.0 171 43.3
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 7.5e-23 111.7 73 75.3
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 1.7e-22 110.5 97 72.2
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 2.8e-22 109.8 153 47.1
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 7.0e-21 105.1 208 38.5
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 3.5e-20 102.8 247 35.2
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 5.9e-20 102.1 247 35.2
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 5.0e-19 99.0 193 37.3
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 5.5e-18 95.5 78 66.7
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.2e-17 94.4 176 37.5
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 1.2e-15 87.8 148 37.2
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 9.8e-15 84.7 108 50.0
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 1.5e-10 70.9 115 40.9
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 2.1e-09 67.0 51 68.6
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 2.7e-09 66.6 155 34.2
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 3.0e-08 63.2 93 45.2


User provided reference genes

Program Settings