Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 5.4e-127 457.6 220 100.0
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 1.6e-94 349.7 220 77.7
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 5.3e-74 281.6 189 72.5
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 5.9e-73 278.1 187 72.7
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 1.0e-72 277.3 173 76.3
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 1.3e-72 276.9 165 79.4
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.9e-72 275.8 162 80.9
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 6.5e-72 274.6 167 79.0
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 6.5e-72 274.6 205 68.3
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 1.4e-71 273.5 161 81.4
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 1.9e-71 273.1 162 76.5
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 3.2e-71 272.3 162 79.6
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 2.7e-70 269.2 162 79.6
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 2.7e-70 269.2 177 73.4
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 3.6e-70 268.9 200 69.5
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 7.9e-70 267.7 146 84.2
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 1.0e-69 267.3 156 80.8
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.3e-69 266.9 212 65.1
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 3.0e-69 265.8 182 71.4
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 3.0e-69 265.8 168 79.2
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 5.1e-69 265.0 185 70.3
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 6.7e-69 264.6 182 71.4
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 8.7e-69 264.2 195 68.2
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 8.7e-69 264.2 156 79.5
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 8.7e-69 264.2 156 79.5
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 8.7e-69 264.2 190 68.9
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 1.1e-68 263.8 229 61.1
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 1.1e-68 263.8 213 61.5
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 1.5e-68 263.5 169 73.4
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 2.5e-68 262.7 168 75.6
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 2.5e-68 262.7 190 68.4
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 3.3e-68 262.3 169 74.6
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 4.3e-68 261.9 180 70.6
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 4.3e-68 261.9 202 63.4
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 5.7e-68 261.5 170 75.9
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 9.7e-68 260.8 214 64.5
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 9.7e-68 260.8 210 64.3
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 2.2e-67 259.6 188 68.1
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 2.2e-67 259.6 220 64.1
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 2.2e-67 259.6 216 63.4
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 2.8e-67 259.2 182 70.9
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 4.8e-67 258.5 150 76.0
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 6.3e-67 258.1 154 76.6
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 6.3e-67 258.1 153 80.4
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 8.2e-67 257.7 164 74.4
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 8.2e-67 257.7 202 63.4
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 8.2e-67 257.7 223 59.6
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 1.1e-66 257.3 187 67.9
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 1.4e-66 256.9 165 73.3
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 2.4e-66 256.1 198 67.2
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 3.1e-66 255.8 155 76.1
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 4.1e-66 255.4 165 71.5
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 4.1e-66 255.4 168 71.4
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 6.9e-66 254.6 202 65.3
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 9.0e-66 254.2 171 70.8
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 1.2e-65 253.8 146 80.1
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 1.2e-65 253.8 146 79.5
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 2.0e-65 253.1 146 81.5
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 3.4e-65 252.3 165 71.5
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 3.4e-65 252.3 165 71.5
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 4.5e-65 251.9 165 70.9
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 4.5e-65 251.9 148 79.1
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 7.7e-65 251.1 213 60.6
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 7.7e-65 251.1 152 77.6
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 1.7e-64 250.0 186 68.3
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 1.7e-64 250.0 149 78.5
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 2.9e-64 249.2 161 75.2
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 3.8e-64 248.8 149 75.2
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 5.0e-64 248.4 146 79.5
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 5.0e-64 248.4 169 71.6
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 6.5e-64 248.1 153 78.4
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 1.1e-63 247.3 149 75.2
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 1.1e-63 247.3 203 64.5
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 2.5e-63 246.1 149 76.5
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 5.5e-63 245.0 142 78.2
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 9.4e-63 244.2 146 77.4
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 1.6e-62 243.4 148 77.0
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.6e-62 243.4 158 74.1
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 1.0e-61 240.7 146 73.3
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 3.0e-61 239.2 153 73.2
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 5.1e-61 238.4 149 75.8
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 6.7e-61 238.0 143 74.1
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 6.3e-59 231.5 202 62.9
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 6.9e-58 228.0 227 55.9
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 1.2e-57 227.3 125 84.8
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 1.0e-56 224.2 141 70.2
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 1.3e-56 223.8 124 82.3
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 1.4e-55 220.3 167 65.9
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 2.5e-55 219.5 148 68.2
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 5.5e-55 218.4 124 79.0
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 2.7e-54 216.1 146 71.2
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 1.5e-52 210.3 130 75.4
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 3.3e-52 209.1 165 64.8
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 3.3e-52 209.1 165 64.8
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 5.7e-52 208.4 148 68.2
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 2.8e-51 206.1 154 67.5
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 3.7e-51 205.7 207 55.6
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 1.1e-50 204.1 154 60.4
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 1.8e-50 203.4 165 61.8
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 3.1e-50 202.6 124 75.0
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 2.0e-49 199.9 137 71.5
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 1.9e-47 193.4 139 60.4
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 5.5e-47 191.8 138 64.5
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 1.2e-46 190.7 165 57.6
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 6.1e-46 188.3 153 60.1
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 6.1e-46 188.3 114 78.1
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 3.0e-45 186.0 101 84.2
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 3.0e-45 186.0 137 63.5
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 6.7e-45 184.9 99 83.8
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 3.3e-44 182.6 140 60.7
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 6.3e-43 178.3 112 75.9
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 2.4e-42 176.4 123 68.3
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 2.4e-42 176.4 123 68.3
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 3.1e-42 176.0 140 61.4
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 4.1e-42 175.6 108 73.1
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 9.1e-42 174.5 102 80.4
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 2.0e-41 173.3 133 59.4
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 2.2e-40 169.9 123 63.4
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 5.5e-39 165.2 108 65.7
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 6.1e-38 161.8 138 57.2
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 2.2e-35 153.3 140 55.7
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 4.5e-33 145.6 118 65.3
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 5.9e-33 145.2 98 61.2
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 2.8e-27 126.3 127 44.1
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 3.7e-27 125.9 117 53.8
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 4.1e-26 122.5 75 72.0
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 2.0e-25 120.2 68 79.4
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 2.0e-25 120.2 75 69.3
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 7.8e-25 118.2 72 73.6
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 2.3e-24 116.7 72 72.2
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 5.0e-24 115.5 72 72.2
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.2e-22 110.9 88 60.2
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 1.4e-21 107.5 85 63.5
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 6.8e-21 105.1 94 52.1
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 8.9e-21 104.8 64 75.0
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 1.3e-19 100.9 61 73.8
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 1.3e-19 100.9 63 69.8
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 1.2e-17 94.4 74 62.2
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 2.7e-17 93.2 63 65.1
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 5.9e-17 92.0 58 70.7
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 3.0e-16 89.7 80 52.5
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 9.2e-10 68.2 61 59.0
RcHm_v2.0_Chr7g0228091 Rosa chinensis HOM05D005182 ORTHO05D344069 8.6e-08 61.6 96 38.5
Dinv33459 Davidia involucrata HOM05D005182 ORTHO05D006631 1.9e-07 60.5 33 78.8


User provided reference genes

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