Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 3.5e-54 214.5 98 100.0
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 2.8e-19 98.6 66 66.7
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 7.7e-17 90.5 66 60.6
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 6.5e-16 87.4 65 58.5
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 6.5e-16 87.4 65 60.0
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 8.5e-16 87.0 62 64.5
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 8.5e-16 87.0 65 61.5
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 1.1e-15 86.7 62 61.3
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 1.5e-15 86.3 65 56.9
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 1.9e-15 85.9 62 62.9
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 2.5e-15 85.5 62 61.3
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 2.5e-15 85.5 62 59.7
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 2.5e-15 85.5 65 60.0
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 3.2e-15 85.1 62 62.9
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 4.2e-15 84.7 68 54.4
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 5.5e-15 84.3 62 61.3
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 5.5e-15 84.3 65 58.5
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 5.5e-15 84.3 65 58.5
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 7.2e-15 84.0 67 55.2
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 7.2e-15 84.0 62 59.7
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 7.2e-15 84.0 62 59.7
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 9.4e-15 83.6 65 60.0
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 9.4e-15 83.6 61 60.7
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 9.4e-15 83.6 65 55.4
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 1.2e-14 83.2 62 61.3
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 1.2e-14 83.2 65 58.5
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 1.6e-14 82.8 63 58.7
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 2.1e-14 82.4 65 56.9
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 2.1e-14 82.4 62 58.1
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 2.7e-14 82.0 62 59.7
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 2.7e-14 82.0 53 69.8
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 2.7e-14 82.0 62 58.1
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 3.6e-14 81.6 58 62.1
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 3.6e-14 81.6 58 62.1
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 3.6e-14 81.6 62 53.2
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 3.6e-14 81.6 62 61.3
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 3.6e-14 81.6 62 61.3
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 3.6e-14 81.6 62 61.3
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 3.6e-14 81.6 62 61.3
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 4.7e-14 81.3 62 56.5
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 4.7e-14 81.3 62 56.5
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 4.7e-14 81.3 65 58.5
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 4.7e-14 81.3 61 57.4
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 4.7e-14 81.3 61 57.4
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 6.1e-14 80.9 58 58.6
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 6.1e-14 80.9 59 62.7
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 6.1e-14 80.9 62 58.1
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 6.1e-14 80.9 65 55.4
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 8.0e-14 80.5 65 55.4
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 8.0e-14 80.5 62 59.7
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 8.0e-14 80.5 62 54.8
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 1.0e-13 80.1 62 56.5
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 1.0e-13 80.1 62 58.1
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 1.4e-13 79.7 61 55.7
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 1.4e-13 79.7 58 58.6
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 1.4e-13 79.7 62 54.8
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 1.4e-13 79.7 70 48.6
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 1.8e-13 79.3 62 56.5
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 1.8e-13 79.3 58 56.9
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.8e-13 79.3 58 58.6
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 1.8e-13 79.3 62 58.1
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 1.8e-13 79.3 63 54.0
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 1.8e-13 79.3 62 54.8
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 2.3e-13 79.0 62 54.8
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 2.3e-13 79.0 62 54.8
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 2.3e-13 79.0 62 54.8
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 2.3e-13 79.0 67 50.7
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 3.0e-13 78.6 70 54.3
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 4.0e-13 78.2 58 56.9
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 4.0e-13 78.2 62 53.2
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 4.0e-13 78.2 65 52.3
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 4.0e-13 78.2 65 52.3
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 4.0e-13 78.2 62 56.5
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 5.2e-13 77.8 58 55.2
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 5.2e-13 77.8 58 56.9
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 5.2e-13 77.8 58 56.9
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 5.2e-13 77.8 62 53.2
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 5.2e-13 77.8 58 58.6
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 5.2e-13 77.8 62 56.5
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 6.8e-13 77.4 58 56.9
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 6.8e-13 77.4 58 56.9
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 6.8e-13 77.4 62 56.5
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 6.8e-13 77.4 62 56.5
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 6.8e-13 77.4 66 51.5
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 8.8e-13 77.0 65 49.2
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 1.2e-12 76.6 62 53.2
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 1.2e-12 76.6 68 50.0
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 2.0e-12 75.9 62 54.8
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 2.0e-12 75.9 61 52.5
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 2.0e-12 75.9 62 51.6
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 2.0e-12 75.9 65 50.8
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 2.6e-12 75.5 62 53.2
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 2.6e-12 75.5 62 51.6
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 3.4e-12 75.1 58 55.2
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 3.4e-12 75.1 58 56.9
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 3.4e-12 75.1 63 50.8
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 4.4e-12 74.7 58 53.4
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 4.4e-12 74.7 58 55.2
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 4.4e-12 74.7 58 55.2
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 4.4e-12 74.7 67 46.3
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 5.7e-12 74.3 64 56.2
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 7.5e-12 73.9 58 56.9
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 7.5e-12 73.9 62 53.2
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 9.8e-12 73.6 58 55.2
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 9.8e-12 73.6 58 53.4
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 9.8e-12 73.6 62 53.2
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 9.8e-12 73.6 58 53.4
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 1.3e-11 73.2 58 55.2
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 1.7e-11 72.8 62 54.8
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 2.2e-11 72.4 62 54.8
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 2.8e-11 72.0 62 51.6
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 2.8e-11 72.0 62 46.8
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 6.3e-11 70.9 53 58.5
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 1.4e-10 69.7 62 50.0
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 2.4e-10 68.9 62 45.2
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 4.1e-10 68.2 55 49.1
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 7.0e-10 67.4 62 50.0
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 7.0e-10 67.4 62 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 1.6e-09 66.2 62 50.0
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 2.7e-09 65.5 60 50.0
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 4.5e-09 64.7 64 51.6
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 2.9e-08 62.0 54 50.0
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 5.0e-08 61.2 82 40.2
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 9.4e-07 57.0 64 43.8
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 1.6e-06 56.2 51 49.0


User provided reference genes

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