Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0547171 Helianthus annuus HOM05D006160 ORTHO05D007674 4.3e-156 554.7 294 100.0
Lsat_1_v5_gn_0_16501 Lactuca sativa HOM05D006160 ORTHO05D007674 1.7e-83 313.5 333 56.5
CSS0008843 Camellia sinensis var. sinensis HOM05D006160 ORTHO05D007674 8.6e-72 274.6 319 48.0
CSS0046343 Camellia sinensis var. sinensis HOM05D006160 ORTHO05D007674 4.3e-71 272.3 319 47.6
Rhsim08G0061700 Rhododendron simsii HOM05D006160 ORTHO05D007674 9.6e-71 271.2 322 49.7
DCAR_013983 Daucus carota HOM05D006160 ORTHO05D007674 2.8e-70 269.6 322 49.1
Rhsim08G0057500 Rhododendron simsii HOM05D006160 ORTHO05D007674 4.7e-70 268.9 322 49.4
Oeu050236.1 Olea europaea HOM05D006160 ORTHO05D007674 2.4e-69 266.5 325 48.0
Hma1.2p1_0849F.1_g228140 Hydrangea macrophylla HOM05D006160 ORTHO05D007674 5.8e-68 261.9 333 46.2
Actinidia33976 Actinidia chinensis HOM05D006160 ORTHO05D007674 5.4e-66 255.4 326 46.0
QL02p078501 Quercus lobata HOM05D006160 ORTHO05D007674 5.4e-66 255.4 333 45.3
TAR629G0883 Trochodendron aralioides HOM05D006160 ORTHO05D007674 5.4e-66 255.4 328 45.1
CiPaw.03G033700 Carya illinoinensis HOM05D006160 ORTHO05D007674 1.2e-65 254.2 331 45.6
CiPaw.04G022200 Carya illinoinensis HOM05D006160 ORTHO05D007674 1.2e-65 254.2 320 47.2
Haze_14622 Corylus avellana HOM05D006160 ORTHO05D007674 6.0e-65 251.9 334 45.2
Cfa007476 Carpinus fangiana HOM05D006160 ORTHO05D007674 1.0e-64 251.1 334 45.2
PGSC0003DMG400001293 Solanum tuberosum HOM05D006160 ORTHO05D007674 1.7e-64 250.4 331 42.3
Lj7P407T47 Lonicera japonica HOM05D006160 ORTHO05D007674 3.0e-64 249.6 266 51.5
Nitab4.5_0007185g0010 Nicotiana tabacum HOM05D006160 ORTHO05D007674 6.6e-64 248.4 327 45.6
ECA246G4454 Erigeron canadensis HOM05D006160 ORTHO05D007674 1.1e-63 247.7 186 70.4
MSTRG.15499 Avicennia marina HOM05D006160 ORTHO05D007674 7.3e-63 245.0 333 43.8
Solyc02g087260.1 Solanum lycopersicum HOM05D006160 ORTHO05D007674 7.3e-63 245.0 331 41.7
SalBow1G6035 Salvia bowleyana HOM05D006160 ORTHO05D007674 1.3e-62 244.2 321 46.7
Sopen02g032010 Solanum pennellii HOM05D006160 ORTHO05D007674 2.8e-62 243.0 331 41.1
PGR083G2234 Punica granatum HOM05D006160 ORTHO05D007674 4.8e-62 242.3 341 43.4
Cc07_g02680 Coffea canephora HOM05D006160 ORTHO05D007674 6.2e-62 241.9 339 45.7
Duzib264G1011 Durio zibethinus HOM05D006160 ORTHO05D007674 8.1e-62 241.5 332 43.7
Migut.K01355 Erythranthe guttata HOM05D006160 ORTHO05D007674 8.1e-62 241.5 333 45.9
Thecc.04G002600 Theobroma cacao HOM05D006160 ORTHO05D007674 1.1e-61 241.1 334 43.7
Thecc.04G002700 Theobroma cacao HOM05D006160 ORTHO05D007674 1.1e-61 241.1 334 43.7
Manes.11G038900 Manihot esculenta HOM05D006160 ORTHO05D007674 3.1e-61 239.6 334 44.6
Sabra05G0101000 Salix brachista HOM05D006160 ORTHO05D007674 3.1e-61 239.6 328 45.7
TWI56G1459 Tripterygium wilfordii HOM05D006160 ORTHO05D007674 5.3e-61 238.8 338 43.2
Cpa.g.c29962.2 Carica papaya HOM05D006160 ORTHO05D007674 9.0e-61 238.0 327 43.4
GSVIVG01032544001 Vitis vinifera HOM05D006160 ORTHO05D007674 1.5e-60 237.3 322 42.2
Potri.005G122800 Populus trichocarpa HOM05D006160 ORTHO05D007674 2.6e-60 236.5 333 45.0
RcHm_v2.0_Chr2g0170271 Rosa chinensis HOM05D006160 ORTHO05D007674 3.4e-60 236.1 324 45.4
Duzib147G1447 Durio zibethinus HOM05D006160 ORTHO05D007674 4.5e-60 235.7 336 44.9
Prupe.3G278200 Prunus persica HOM05D006160 ORTHO05D007674 7.6e-60 235.0 328 41.8
Gohir.A05G361800 Gossypium hirsutum HOM05D006160 ORTHO05D007674 1.3e-59 234.2 347 41.8
CsaV3_3G042010 Cucumis sativus L. HOM05D006160 ORTHO05D007674 2.9e-59 233.0 332 42.8
CAN.G206.64 Capsicum annuum HOM05D006160 ORTHO05D007674 3.8e-59 232.6 330 41.5
MELO3C009921.2 Cucumis melo HOM05D006160 ORTHO05D007674 3.8e-59 232.6 335 43.6
Eucgr.J02169 Eucalyptus grandis HOM05D006160 ORTHO05D007674 6.4e-59 231.9 263 47.5
FAN14G4363 Fragaria x ananassa HOM05D006160 ORTHO05D007674 8.4e-59 231.5 326 46.9
FAN05G0598 Fragaria x ananassa HOM05D006160 ORTHO05D007674 1.4e-58 230.7 329 45.6
COL.COLO4_34360 Corchorus olitorius HOM05D006160 ORTHO05D007674 1.9e-58 230.3 339 42.5
TAR622G0926 Trochodendron aralioides HOM05D006160 ORTHO05D007674 7.1e-58 228.4 338 41.7
FAN09G3358 Fragaria x ananassa HOM05D006160 ORTHO05D007674 1.2e-57 227.6 326 45.7
ClCG10G014570 Citrullus lanatus HOM05D006160 ORTHO05D007674 1.6e-57 227.3 344 42.4
FvH4_6g50020 Fragaria vesca HOM05D006160 ORTHO05D007674 1.6e-57 227.3 324 46.0
MD17G1040800 Malus domestica HOM05D006160 ORTHO05D007674 2.1e-57 226.9 331 41.7
THA.LOC104802410 Tarenaya hassleriana HOM05D006160 ORTHO05D007674 2.1e-57 226.9 334 41.9
Ciclev10013666m.g Citrus clementina HOM05D006160 ORTHO05D007674 4.6e-57 225.7 330 43.0
Nn3g17021 Nelumbo nucifera HOM05D006160 ORTHO05D007674 6.0e-57 225.3 333 42.0
Gorai.012G058700 Gossypium raimondii HOM05D006160 ORTHO05D007674 7.9e-57 224.9 336 41.7
SGA_v2.0_scaffold224G42970 Striga asiatica HOM05D000629 ORTHO05D000576 1.8e-56 223.8 299 44.8
Gohir.D04G052600 Gossypium hirsutum HOM05D006160 ORTHO05D007674 3.9e-56 222.6 336 41.4
Gohir.A12G126333 Gossypium hirsutum HOM05D006160 ORTHO05D007674 8.7e-56 221.5 311 43.4
Gohir.A06G128104 Gossypium hirsutum HOM05D006160 ORTHO05D007674 2.5e-55 219.9 300 44.0
VMungo1383G0493 Vigna mungo HOM05D006160 ORTHO05D007674 3.3e-55 219.5 313 42.2
Gohir.A07G181850 Gossypium hirsutum HOM05D006160 ORTHO05D007674 7.4e-55 218.4 300 43.3
Nitab4.5_0004905g0010 Nicotiana tabacum HOM05D006160 ORTHO05D007674 7.4e-55 218.4 218 49.1
MD09G1040200 Malus domestica HOM05D006160 ORTHO05D007674 9.6e-55 218.0 332 41.0
Sed0020076 Sechium edule HOM05D006160 ORTHO05D007674 9.6e-55 218.0 299 44.1
Gohir.A03G007400 Gossypium hirsutum HOM05D006160 ORTHO05D007674 1.3e-54 217.6 300 43.7
Gohir.D02G203256 Gossypium hirsutum HOM05D006160 ORTHO05D007674 1.3e-54 217.6 300 43.7
Glyma.19G103966 Glycine max HOM05D006160 ORTHO05D007674 1.6e-54 217.2 322 42.2
CARHR075620 Cardamine hirsuta HOM05D006160 ORTHO05D007674 2.8e-54 216.5 327 40.7
Gohir.A02G134601 Gossypium hirsutum HOM05D006160 ORTHO05D007674 3.6e-54 216.1 300 43.7
Gohir.A10G208350 Gossypium hirsutum HOM05D006160 ORTHO05D007674 3.6e-54 216.1 300 43.3
Gohir.A01G199600 Gossypium hirsutum HOM05D006160 ORTHO05D007674 4.8e-54 215.7 300 43.3
unitig_748.g8439 Utricularia gibba HOM05D006160 ORTHO05D007674 4.8e-54 215.7 330 40.0
A05p44620 Brassica napus HOM05D006160 ORTHO05D007674 1.4e-53 214.2 326 40.5
Gohir.D12G020250 Gossypium hirsutum HOM05D006160 ORTHO05D007674 1.4e-53 214.2 274 44.9
Phvul.001G084200 Phaseolus vulgaris HOM05D006160 ORTHO05D007674 1.8e-53 213.8 319 40.8
BraA05t23194Z Brassica rapa HOM05D006160 ORTHO05D007674 2.4e-53 213.4 326 40.5
Gohir.D09G171500 Gossypium hirsutum HOM05D006160 ORTHO05D007674 3.1e-53 213.0 300 43.0
AT3G01360 Arabidopsis thaliana HOM05D006160 ORTHO05D007674 5.3e-53 212.2 328 39.9
BcaC05g30463 Brassica carinata HOM05D006160 ORTHO05D007674 9.0e-53 211.5 328 40.5
Gohir.D09G039200 Gossypium hirsutum HOM05D006160 ORTHO05D007674 1.5e-52 210.7 269 45.0
Sc20g0002680 Simmondsia chinensis HOM05D006160 ORTHO05D007674 1.5e-52 210.7 319 41.4
Gorai.006G069400 Gossypium raimondii HOM05D006160 ORTHO05D007674 3.4e-52 209.5 240 47.1
Carub.0003s0073 Capsella rubella HOM05D006160 ORTHO05D007674 5.8e-52 208.8 328 39.0
AL3G10850 Arabidopsis lyrata HOM05D006160 ORTHO05D007674 7.6e-52 208.4 332 38.6
BolC5t35143H Brassica oleracea HOM05D006160 ORTHO05D007674 7.6e-52 208.4 329 40.7
C09p75210 Brassica napus HOM05D006160 ORTHO05D007674 9.9e-52 208.0 328 40.9
Sp3g00710 Schrenkiella parvula HOM05D006160 ORTHO05D007674 9.9e-52 208.0 326 40.2
Thhalv10022440m.g Eutrema salsugineum HOM05D006160 ORTHO05D007674 1.3e-51 207.6 327 40.1
Nn4g22919 Nelumbo nucifera HOM05D006160 ORTHO05D007674 1.3e-51 207.6 336 39.3
Gorai.001G255400 Gossypium raimondii HOM05D006160 ORTHO05D007674 2.9e-51 206.5 269 45.0
MBI15_g14839_MAGBIO Magnolia biondii HOM05D006160 ORTHO05D007674 3.8e-51 206.1 290 40.7
Peaxi162Scf00129g00711 Petunia axillaris HOM05D006160 ORTHO05D007674 1.1e-50 204.5 188 54.3
Aqoxy3G03111 Aquilegia oxysepala HOM05D006160 ORTHO05D007674 2.4e-50 203.4 334 38.6
Lsat_1_v5_gn_4_173961 Lactuca sativa HOM05D006160 ORTHO05D007674 5.5e-50 202.2 124 75.8
Gorai.006G069300 Gossypium raimondii HOM05D006160 ORTHO05D007674 9.3e-50 201.4 255 45.1
Lalb_Chr10g0093421 Lupinus albus HOM05D006160 ORTHO05D007674 6.0e-49 198.7 323 40.9
CDE04G3446 Ceratophyllum demersum HOM05D006160 ORTHO05D007674 7.9e-49 198.4 286 40.2
Ca_27075_v3 Cicer arietinum L. HOM05D006160 ORTHO05D007674 1.3e-48 197.6 315 41.6
Medtr7g034135 Medicago truncatula HOM05D006160 ORTHO05D007674 1.3e-48 197.6 312 41.3
AUR62022120 Chenopodium quinoa HOM05D006160 ORTHO05D007674 2.3e-48 196.8 319 38.2
PSO591G0049 Papaver somniferum HOM05D006160 ORTHO05D007674 3.0e-48 196.4 271 41.3
EL10Ac7g18003 Beta vulgaris HOM05D006160 ORTHO05D007674 3.9e-48 196.1 281 42.7
PSO832G1329 Papaver somniferum HOM05D006160 ORTHO05D007674 3.9e-48 196.1 336 36.9
Aa31LG5G10480 Aethionema arabicum HOM05D006160 ORTHO05D007674 8.7e-48 194.9 327 40.1
TPR.G39149 Trifolium pratense HOM05D006160 ORTHO05D007674 5.6e-47 192.2 287 40.8
Psat3g172360 Pisum sativum HOM05D006160 ORTHO05D007674 4.0e-45 186.0 314 37.9
AUR62001209 Chenopodium quinoa HOM05D006160 ORTHO05D007674 1.7e-43 180.6 230 43.9
Gohir.D06G170950 Gossypium hirsutum HOM05D006160 ORTHO05D007674 2.8e-38 163.3 162 50.6
ATR0021G006 Amborella trichopoda HOM05D006160 ORTHO05D007674 4.8e-38 162.5 296 35.8
arahy.Tifrunner.gnm1.ann1.JXM62U Arachis hypogaea HOM05D006160 ORTHO05D007674 1.5e-36 157.5 144 50.0
SEGI_35137 Sequoiadendron giganteum HOM05D006160 ORTHO05D007674 2.6e-36 156.8 319 34.2
HPP92_025618 Vanilla planifolia HOM05D006160 ORTHO05D007674 3.6e-33 146.4 284 32.0
Os06g0238900 Oryza sativa ssp. japonica HOM05D006160 ORTHO05D007674 4.6e-33 146.0 317 36.3
Dinv35018 Davidia involucrata HOM05D006160 ORTHO05D007674 3.0e-32 143.3 291 39.5
unitig_32.g10740 Utricularia gibba HOM05D006160 ORTHO05D007674 2.5e-31 140.2 157 43.9
Zm00001eb279980 Zea mays HOM05D006160 ORTHO05D007674 1.4e-29 134.4 311 35.0
Cc11_g06740 Coffea canephora HOM05D006160 ORTHO05D007674 1.2e-25 121.3 178 47.8
Lj1g0002469 Lotus japonicus HOM05D006160 ORTHO05D007674 3.0e-24 116.7 193 40.4
Mapoly0039s0012 Marchantia polymorpha HOM05D006160 ORTHO05D007674 4.5e-20 102.8 156 36.5
Pp3c16_16610 Physcomitrium patens HOM05D006160 ORTHO05D007674 4.5e-20 102.8 166 39.8
Ah.08g218630 Amaranthus hybridus HOM05D006160 ORTHO05D007674 2.9e-19 100.1 132 44.7
SMO115G0117 Selaginella moellendorffii HOM05D006160 ORTHO05D007674 3.8e-19 99.8 144 35.4
CDE07G1150 Ceratophyllum demersum HOM05D006160 ORTHO05D007674 2.1e-17 94.0 225 33.8
Cc11_g06840 Coffea canephora HOM05D006160 ORTHO05D007674 1.1e-13 81.6 179 38.0
ATR0598G351 Amborella trichopoda HOM05D001193 ORTHO05D001016 1.5e-10 71.2 185 31.4
SMO329G0094 Selaginella moellendorffii HOM05D001193 ORTHO05D001016 1.9e-10 70.9 205 28.3
Pp3c1_25080 Physcomitrium patens HOM05D001193 ORTHO05D001016 3.2e-10 70.1 233 27.0
SHI30458 Sapria himalayana HOM05D001193 ORTHO05D001016 9.4e-10 68.6 191 29.3
TPR.G2462 Trifolium pratense HOM05D001193 ORTHO05D001016 2.1e-09 67.4 140 32.1
SMO115G0077 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 3.6e-09 66.6 143 28.7
Psat6g230840 Pisum sativum HOM05D001193 ORTHO05D001016 4.7e-09 66.2 184 29.3
Os09g0444800 Oryza sativa ssp. japonica HOM05D001193 ORTHO05D001016 6.1e-09 65.9 154 27.9
Psat6g230800 Pisum sativum HOM05D001193 ORTHO05D001016 1.4e-08 64.7 191 28.3
Os09g0444900 Oryza sativa ssp. japonica HOM05D001193 ORTHO05D001016 1.8e-08 64.3 129 31.0
Nn3g21170 Nelumbo nucifera HOM05D001193 ORTHO05D001016 2.3e-08 63.9 120 31.7
BcaC01g01500 Brassica carinata HOM05D001193 ORTHO05D001016 4.0e-08 63.2 193 24.9
BolC3t21568H Brassica oleracea HOM05D001193 ORTHO05D001016 4.0e-08 63.2 193 24.9
SEGI_32401 Sequoiadendron giganteum HOM05D001193 ORTHO05D001016 4.0e-08 63.2 211 28.4
DCAR_025420 Daucus carota HOM05D001193 ORTHO05D001016 5.2e-08 62.8 130 25.4
Zm00001eb314330 Zea mays HOM05D001193 ORTHO05D001016 1.2e-07 61.6 129 31.0
Lalb_Chr21g0309201 Lupinus albus HOM05D001193 ORTHO05D001016 1.5e-07 61.2 235 27.2
MD00G1000700 Malus domestica HOM05D001193 ORTHO05D001016 1.5e-07 61.2 120 29.2
MD06G1014200 Malus domestica HOM05D001193 ORTHO05D001016 2.6e-07 60.5 120 30.0
Mapoly0016s0059 Marchantia polymorpha HOM05D001193 ORTHO05D001016 2.6e-07 60.5 211 28.4
Prupe.5G022200 Prunus persica HOM05D001193 ORTHO05D001016 3.3e-07 60.1 120 30.0
Sed0025953 Sechium edule HOM05D001193 ORTHO05D001016 3.3e-07 60.1 129 28.7
CARHR044880 Cardamine hirsuta HOM05D001193 ORTHO05D001016 4.4e-07 59.7 133 27.8
PGSC0003DMG400032228 Solanum tuberosum HOM05D001193 ORTHO05D001016 5.7e-07 59.3 201 23.4
Zm00001eb276230 Zea mays HOM05D001193 ORTHO05D001016 5.7e-07 59.3 118 28.8
ATR0829G135 Amborella trichopoda HOM05D001193 ORTHO05D001016 9.7e-07 58.5 118 29.7
Os08g0462800 Oryza sativa ssp. japonica HOM05D001193 ORTHO05D001016 9.7e-07 58.5 124 29.0
Zm00001eb167000 Zea mays HOM05D001193 ORTHO05D001016 9.7e-07 58.5 119 29.4
Haze_08081 Corylus avellana HOM05D001193 ORTHO05D001016 1.3e-06 58.2 121 30.6
Haze_08084 Corylus avellana HOM05D001193 ORTHO05D001016 1.3e-06 58.2 121 30.6
Solyc01g006050.2 Solanum lycopersicum HOM05D001193 ORTHO05D001016 1.3e-06 58.2 236 24.2
AagrBONN_evm.TU.Sc2ySwM_117.445 Anthoceros agrestis HOM05D001193 ORTHO05D001016 1.7e-06 57.8 146 30.8
Cfa012578 Carpinus fangiana HOM05D001193 ORTHO05D001016 1.7e-06 57.8 121 31.4
RcHm_v2.0_Chr7g0213211 Rosa chinensis HOM05D001193 ORTHO05D001016 1.7e-06 57.8 120 28.3
CARHR044890 Cardamine hirsuta HOM05D001193 ORTHO05D001016 2.2e-06 57.4 139 28.1
Nn2g12092 Nelumbo nucifera HOM05D006160 ORTHO05D007674 2.2e-06 57.4 36 61.1
Sopen01g002050 Solanum pennellii HOM05D001193 ORTHO05D001016 2.2e-06 57.4 236 24.2
unitig_0.g2216 Utricularia gibba HOM05D001193 ORTHO05D001016 2.2e-06 57.4 123 25.2
Aqoxy7G00856 Aquilegia oxysepala HOM05D001193 ORTHO05D001016 2.8e-06 57.0 118 28.0
MSTRG.13977 Avicennia marina HOM05D001193 ORTHO05D001016 2.8e-06 57.0 120 25.8
Atru.chr13.1399 Acer truncatum HOM05D001193 ORTHO05D001016 3.7e-06 56.6 147 27.2
MSTRG.1779 Avicennia marina HOM05D001193 ORTHO05D001016 3.7e-06 56.6 118 25.4
Atru.chr5.2874 Acer truncatum HOM05D001193 ORTHO05D001016 4.8e-06 56.2 147 27.9
Nitab4.5_0002733g0050 Nicotiana tabacum HOM05D001193 ORTHO05D001016 4.8e-06 56.2 221 24.0
Sopen08g024620 Solanum pennellii HOM05D001193 ORTHO05D001016 6.3e-06 55.8 118 27.1
Zm00001eb314320 Zea mays HOM05D001193 ORTHO05D001016 6.3e-06 55.8 163 23.3
Aqoxy7G01067 Aquilegia oxysepala HOM05D001193 ORTHO05D001016 8.2e-06 55.5 133 28.6
Manes.17G008600 Manihot esculenta HOM05D001193 ORTHO05D001016 8.2e-06 55.5 120 29.2


User provided reference genes

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