Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0546571 Helianthus annuus HOM05D006599 ORTHO05D008304 1.8e-147 525.8 249 100.0
Lsat_1_v5_gn_3_98261 Lactuca sativa HOM05D006599 ORTHO05D008304 5.9e-130 467.6 248 85.5
CSS0025230 Camellia sinensis var. sinensis HOM05D006599 ORTHO05D008304 1.8e-115 419.5 250 79.2
ECA232G1145 Erigeron canadensis HOM05D006599 ORTHO05D008304 3.5e-114 415.2 249 76.3
HanXRQChr17g0551751 Helianthus annuus HOM05D006599 ORTHO05D008304 7.7e-114 414.1 249 75.9
TAR629G1530 Trochodendron aralioides HOM05D006599 ORTHO05D008304 6.5e-113 411.0 248 76.6
Thecc.04G093300 Theobroma cacao HOM05D006599 ORTHO05D008304 8.6e-113 410.6 250 76.0
COL.COLO4_21402 Corchorus olitorius HOM05D006599 ORTHO05D008304 4.2e-112 408.3 250 74.8
Gohir.A11G072300 Gossypium hirsutum HOM05D006599 ORTHO05D008304 3.0e-110 402.1 250 74.0
Gohir.D11G076400 Gossypium hirsutum HOM05D006599 ORTHO05D008304 5.2e-110 401.4 250 74.0
Gorai.007G082000 Gossypium raimondii HOM05D006599 ORTHO05D008304 5.2e-110 401.4 250 74.0
TWI34G0408 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 5.2e-110 401.4 250 73.6
Duzib147G0316 Durio zibethinus HOM05D006599 ORTHO05D008304 6.8e-110 401.0 250 74.4
Nitab4.5_0000565g0260 Nicotiana tabacum HOM05D006599 ORTHO05D008304 8.8e-110 400.6 251 73.3
FvH4_6g47020 Fragaria vesca HOM05D006599 ORTHO05D008304 2.6e-109 399.1 250 74.0
FAN14G4927 Fragaria x ananassa HOM05D006599 ORTHO05D008304 2.6e-109 399.1 250 74.0
TWI32G0394 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 3.4e-109 398.7 250 73.2
GSVIVG01032932001 Vitis vinifera HOM05D006599 ORTHO05D008304 4.4e-109 398.3 250 75.2
Nitab4.5_0010051g0050 Nicotiana tabacum HOM05D006599 ORTHO05D008304 5.7e-109 397.9 251 72.5
Peaxi162Scf00166g00058 Petunia axillaris HOM05D006599 ORTHO05D008304 1.3e-108 396.7 251 72.1
Cc07_g04100 Coffea canephora HOM05D006599 ORTHO05D008304 1.7e-108 396.4 251 73.7
FAN09G1977 Fragaria x ananassa HOM05D006599 ORTHO05D008304 1.7e-108 396.4 250 73.6
Nn4g23391 Nelumbo nucifera HOM05D006599 ORTHO05D008304 1.7e-108 396.4 250 72.8
QL02p067958 Quercus lobata HOM05D006599 ORTHO05D008304 2.2e-108 396.0 246 73.6
Migut.H00636 Erythranthe guttata HOM05D006599 ORTHO05D008304 4.9e-108 394.8 250 71.6
Oeu047780.1 Olea europaea HOM05D006599 ORTHO05D008304 1.1e-107 393.7 250 73.2
CAN.G206.218 Capsicum annuum HOM05D006599 ORTHO05D008304 3.1e-107 392.1 251 70.9
FAN02G1129 Fragaria x ananassa HOM05D006599 ORTHO05D008304 3.1e-107 392.1 250 72.8
Cfa007654 Carpinus fangiana HOM05D006599 ORTHO05D008304 7.0e-107 391.0 250 71.2
MSTRG.23889 Avicennia marina HOM05D006599 ORTHO05D008304 1.2e-106 390.2 249 69.5
PGSC0003DMG400001449 Solanum tuberosum HOM05D006599 ORTHO05D008304 1.2e-106 390.2 251 70.9
DCAR_025424 Daucus carota HOM05D006599 ORTHO05D008304 1.6e-106 389.8 250 72.0
RcHm_v2.0_Chr2g0166081 Rosa chinensis HOM05D006599 ORTHO05D008304 1.6e-106 389.8 250 72.8
Hma1.2p1_0481F.1_g162060 Hydrangea macrophylla HOM05D006599 ORTHO05D008304 2.0e-106 389.4 251 73.3
Sopen02g033440 Solanum pennellii HOM05D006599 ORTHO05D008304 2.7e-106 389.0 251 70.5
Manes.02G054000 Manihot esculenta HOM05D006599 ORTHO05D008304 4.5e-106 388.3 250 71.6
Solyc02g088730.2 Solanum lycopersicum HOM05D006599 ORTHO05D008304 5.9e-106 387.9 251 70.5
Nn3g17418 Nelumbo nucifera HOM05D006599 ORTHO05D008304 7.8e-106 387.5 250 72.0
Potri.004G119500 Populus trichocarpa HOM05D006599 ORTHO05D008304 7.8e-106 387.5 250 72.0
Ca_04338_v3 Cicer arietinum L. HOM05D006599 ORTHO05D008304 3.8e-105 385.2 252 72.2
Rhsim08G0074600 Rhododendron simsii HOM05D006599 ORTHO05D008304 1.1e-104 383.6 250 71.2
ClCG07G007400 Citrullus lanatus HOM05D006599 ORTHO05D008304 3.3e-104 382.1 250 70.4
Sc14g0006220 Simmondsia chinensis HOM05D006599 ORTHO05D008304 3.3e-104 382.1 250 72.0
Oeu035439.1 Olea europaea HOM05D006599 ORTHO05D008304 4.3e-104 381.7 250 71.6
Psat3g201440 Pisum sativum HOM05D006599 ORTHO05D008304 9.5e-104 380.6 252 70.2
arahy.Tifrunner.gnm1.ann1.CT2P3Y Arachis hypogaea HOM05D006599 ORTHO05D008304 1.2e-103 380.2 252 72.2
arahy.Tifrunner.gnm1.ann1.24WTBT Arachis hypogaea HOM05D006599 ORTHO05D008304 2.1e-103 379.4 252 71.8
PGR083G1582 Punica granatum HOM05D006599 ORTHO05D008304 3.6e-103 378.6 249 68.3
Lj1g0001712 Lotus japonicus HOM05D006599 ORTHO05D008304 8.0e-103 377.5 252 70.6
CiPaw.03G089500 Carya illinoinensis HOM05D006599 ORTHO05D008304 1.4e-102 376.7 250 71.6
Atru.chr8.423 Acer truncatum HOM05D006599 ORTHO05D008304 1.8e-102 376.3 250 68.8
MD09G1064500 Malus domestica HOM05D006599 ORTHO05D008304 2.3e-102 375.9 250 70.4
Gohir.D09G009200 Gossypium hirsutum HOM05D006599 ORTHO05D008304 3.0e-102 375.6 250 70.0
Sabra04G0069000 Salix brachista HOM05D006599 ORTHO05D008304 5.2e-102 374.8 250 69.6
MELO3C013909.2 Cucumis melo HOM05D006599 ORTHO05D008304 8.9e-102 374.0 250 68.8
Gorai.006G010900 Gossypium raimondii HOM05D006599 ORTHO05D008304 2.0e-101 372.9 250 69.6
Prupe.3G256500 Prunus persica HOM05D006599 ORTHO05D008304 2.0e-101 372.9 250 69.2
Glyma.18G265500 Glycine max HOM05D006599 ORTHO05D008304 4.4e-101 371.7 252 70.2
Medtr7g013160 Medicago truncatula HOM05D006599 ORTHO05D008304 4.4e-101 371.7 252 69.4
TPR.G33427 Trifolium pratense HOM05D006599 ORTHO05D008304 5.7e-101 371.3 252 70.6
Lalb_Chr17g0337021 Lupinus albus HOM05D006599 ORTHO05D008304 7.5e-101 370.9 252 70.6
Potri.017G092800 Populus trichocarpa HOM05D006599 ORTHO05D008304 9.8e-101 370.5 246 69.1
Gohir.A09G010100 Gossypium hirsutum HOM05D006599 ORTHO05D008304 3.7e-100 368.6 250 68.8
SGA_v2.0_scaffold52G19170 Striga asiatica HOM05D006599 ORTHO05D008304 4.9e-100 368.2 251 67.7
Sed0027615 Sechium edule HOM05D006599 ORTHO05D008304 8.3e-100 367.5 247 67.6
CsaV3_3G002390 Cucumis sativus L. HOM05D006599 ORTHO05D008304 1.1e-99 367.1 250 68.0
Phvul.008G034600 Phaseolus vulgaris HOM05D006599 ORTHO05D008304 1.8e-99 366.3 252 69.0
CANSAT64G1926 Cannabis sativa HOM05D006599 ORTHO05D008304 5.4e-99 364.8 254 68.1
VMungo1383G0637 Vigna mungo HOM05D006599 ORTHO05D008304 5.4e-99 364.8 252 68.3
Sabra17G0081900 Salix brachista HOM05D006599 ORTHO05D008304 7.0e-99 364.4 246 68.3
Aqoxy3G00501 Aquilegia oxysepala HOM05D006599 ORTHO05D008304 8.6e-97 357.5 246 67.5
Thecc.04G093200 Theobroma cacao HOM05D006599 ORTHO05D008304 9.5e-96 354.0 250 68.0
PSO017G0459 Papaver somniferum HOM05D006599 ORTHO05D008304 6.2e-95 351.3 250 64.8
PSO478G2235 Papaver somniferum HOM05D006599 ORTHO05D008304 1.4e-94 350.1 251 64.1
Thhalv10027896m.g Eutrema salsugineum HOM05D006599 ORTHO05D008304 1.8e-94 349.7 252 65.1
Eucgr.J01379 Eucalyptus grandis HOM05D006599 ORTHO05D008304 4.0e-94 348.6 248 64.5
Ciclev10012597m.g Citrus clementina HOM05D006599 ORTHO05D008304 1.2e-93 347.1 250 66.4
AUR62029230 Chenopodium quinoa HOM05D006599 ORTHO05D008304 1.5e-93 346.7 245 66.9
THA.LOC104823890 Tarenaya hassleriana HOM05D006599 ORTHO05D008304 3.4e-93 345.5 250 64.0
A04p11970 Brassica napus HOM05D006599 ORTHO05D008304 2.9e-92 342.4 252 63.5
C04p45620 Brassica napus HOM05D006599 ORTHO05D008304 2.9e-92 342.4 252 63.5
BolC4t26144H Brassica oleracea HOM05D006599 ORTHO05D008304 2.9e-92 342.4 252 63.5
BraA04t16862Z Brassica rapa HOM05D006599 ORTHO05D008304 2.9e-92 342.4 252 63.5
Aa31LG9G16680 Aethionema arabicum HOM05D006599 ORTHO05D008304 3.7e-92 342.0 252 63.5
BcaC02g09687 Brassica carinata HOM05D006599 ORTHO05D008304 3.7e-92 342.0 252 63.5
AUR62022778 Chenopodium quinoa HOM05D006599 ORTHO05D008304 4.9e-92 341.7 245 66.5
Glyma.08G243300 Glycine max HOM05D006599 ORTHO05D008304 7.0e-91 337.8 262 63.0
BcaB06g27283 Brassica carinata HOM05D006599 ORTHO05D008304 1.2e-90 337.0 252 61.9
Carub.0007s3667 Capsella rubella HOM05D006599 ORTHO05D008304 6.0e-90 334.7 252 62.7
CARHR263160 Cardamine hirsuta HOM05D006599 ORTHO05D008304 7.8e-90 334.3 252 61.9
Sp7g02740 Schrenkiella parvula HOM05D006599 ORTHO05D008304 7.8e-90 334.3 252 61.9
AT5G39250 Arabidopsis thaliana HOM05D006599 ORTHO05D008304 1.3e-89 333.6 253 62.8
Manes.01G097300 Manihot esculenta HOM05D006599 ORTHO05D008304 2.3e-89 332.8 228 67.5
Peaxi162Scf00451g00012 Petunia axillaris HOM05D006599 ORTHO05D008304 8.6e-89 330.9 239 64.0
AL7G51210 Arabidopsis lyrata HOM05D006599 ORTHO05D008304 1.9e-88 329.7 252 61.9
ATR0064G081 Amborella trichopoda HOM05D006599 ORTHO05D008304 2.0e-85 319.7 246 60.6
unitig_744.g23984 Utricularia gibba HOM05D006599 ORTHO05D008304 1.7e-84 316.6 250 58.4
CDE10G0620 Ceratophyllum demersum HOM05D006599 ORTHO05D008304 7.1e-83 311.2 237 56.5
Haze_14439 Corylus avellana HOM05D006599 ORTHO05D008304 9.5e-80 300.8 203 65.5
Zm00001eb020180 Zea mays HOM05D006599 ORTHO05D008304 1.2e-79 300.4 247 57.9
Os03g0423000 Oryza sativa ssp. japonica HOM05D006599 ORTHO05D008304 1.1e-78 297.4 248 56.0
HPP92_009527 Vanilla planifolia HOM05D006599 ORTHO05D008304 9.9e-77 290.8 246 56.9
HPP92_009554 Vanilla planifolia HOM05D006599 ORTHO05D008304 2.9e-76 289.3 246 56.5
SHI25645 Sapria himalayana HOM05D006599 ORTHO05D008304 3.5e-74 282.3 245 54.7
Pp3c13_10960 Physcomitrium patens HOM05D006599 ORTHO05D008304 5.2e-70 268.5 250 52.0
Lsat_1_v5_gn_7_2780 Lactuca sativa HOM05D006599 ORTHO05D008304 1.2e-61 240.7 258 53.5
Mapoly0038s0100 Marchantia polymorpha HOM05D006599 ORTHO05D008304 9.9e-61 237.7 249 45.8
SMO347G0158 Selaginella moellendorffii HOM05D006599 ORTHO05D008304 1.1e-59 234.2 267 44.9
FAN05G2816 Fragaria x ananassa HOM05D006599 ORTHO05D008304 1.4e-59 233.8 154 66.9
Dinv34953 Davidia involucrata HOM05D006599 ORTHO05D008304 1.8e-57 226.9 139 79.9
Peaxi162Scf00451g00005 Petunia axillaris HOM05D006599 ORTHO05D008304 3.2e-51 206.1 286 44.8
Lj4E117T1 Lonicera japonica HOM05D006599 ORTHO05D008304 1.9e-43 180.3 111 70.3
Dinv33823 Davidia involucrata HOM05D006599 ORTHO05D008304 6.7e-41 171.8 99 84.8
Lalb_Chr10g0093051 Lupinus albus HOM05D006599 ORTHO05D008304 2.5e-32 143.3 95 71.6
PGSC0003DMG400031200 Solanum tuberosum HOM05D006599 ORTHO05D008304 2.0e-24 117.1 100 63.0
EL10Ac9g22551 Beta vulgaris HOM05D006599 ORTHO05D008304 8.2e-23 111.7 72 65.3
Peaxi162Scf00270g00422 Petunia axillaris HOM05D006599 ORTHO05D008304 2.4e-22 110.2 152 46.1
Lalb_Chr10g0093041 Lupinus albus HOM05D006599 ORTHO05D008304 1.1e-16 91.3 54 70.4
MD17G1057800 Malus domestica HOM05D006599 ORTHO05D008304 1.3e-15 87.8 52 65.4
TPR.G10380 Trifolium pratense HOM05D006599 ORTHO05D008304 1.0e-12 78.2 45 73.3
Nitab4.5_0011420g0010 Nicotiana tabacum HOM05D007529 ORTHO05D007451 1.3e-07 61.2 112 33.0
Nitab4.5_0001618g0110 Nicotiana tabacum HOM05D007529 ORTHO05D007451 2.8e-07 60.1 112 33.0
ClCG04G003960 Citrullus lanatus HOM05D007529 ORTHO05D007451 8.2e-07 58.5 130 28.5
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 1.1e-06 58.2 109 31.2
SalBow1G4167 Salvia bowleyana HOM05D007529 ORTHO05D007451 1.4e-06 57.8 109 29.4
SMO340G0132 Selaginella moellendorffii HOM05D027965 ORTHO05D007451 9.1e-06 55.1 117 29.9


User provided reference genes

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