Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 5.5e-79 297.7 171 100.0
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 4.4e-36 155.2 86 91.9
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 3.1e-29 132.5 82 78.0
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 5.8e-28 128.3 80 75.0
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 2.9e-27 125.9 85 69.4
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 2.9e-27 125.9 82 78.0
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 3.8e-27 125.6 80 72.5
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 4.9e-27 125.2 92 67.4
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 6.4e-27 124.8 83 73.5
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 6.4e-27 124.8 93 65.6
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 6.4e-27 124.8 97 63.9
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 8.4e-27 124.4 113 55.8
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 1.1e-26 124.0 83 72.3
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 1.4e-26 123.6 83 68.7
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 2.4e-26 122.9 76 76.3
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 2.4e-26 122.9 78 73.1
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 3.2e-26 122.5 92 68.5
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 3.2e-26 122.5 77 75.3
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 3.2e-26 122.5 83 69.9
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 4.2e-26 122.1 83 71.1
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 5.4e-26 121.7 78 75.6
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 7.1e-26 121.3 95 64.2
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 9.3e-26 120.9 95 63.2
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 9.3e-26 120.9 83 69.9
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 9.3e-26 120.9 78 71.8
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 9.3e-26 120.9 76 73.7
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.6e-25 120.2 78 73.1
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 1.6e-25 120.2 82 68.3
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 1.6e-25 120.2 82 68.3
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 1.6e-25 120.2 78 74.4
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 2.1e-25 119.8 77 74.0
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 2.1e-25 119.8 95 63.2
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 2.1e-25 119.8 83 68.7
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 2.1e-25 119.8 83 69.9
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 2.1e-25 119.8 79 70.9
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 2.7e-25 119.4 78 70.5
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 3.5e-25 119.0 94 62.8
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.6e-25 118.6 79 69.6
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.6e-25 118.6 79 69.6
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 4.6e-25 118.6 76 73.7
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 6.0e-25 118.2 82 68.3
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 6.0e-25 118.2 81 70.4
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 6.0e-25 118.2 77 72.7
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 1.0e-24 117.5 83 66.3
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 1.3e-24 117.1 106 55.7
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.8e-24 116.7 76 71.1
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 1.8e-24 116.7 78 70.5
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 1.8e-24 116.7 102 61.8
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 3.0e-24 115.9 74 77.0
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 3.9e-24 115.5 74 74.3
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 5.1e-24 115.2 74 74.3
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 5.1e-24 115.2 78 67.9
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 5.1e-24 115.2 78 67.9
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 5.1e-24 115.2 78 66.7
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 5.1e-24 115.2 74 74.3
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 5.1e-24 115.2 79 68.4
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 6.7e-24 114.8 90 65.6
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 6.7e-24 114.8 81 67.9
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 1.1e-23 114.0 76 72.4
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 1.1e-23 114.0 80 66.2
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 1.5e-23 113.6 74 71.6
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.5e-23 113.6 78 66.7
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 1.9e-23 113.2 96 60.4
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 1.9e-23 113.2 98 60.2
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 1.9e-23 113.2 111 56.8
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 1.9e-23 113.2 78 66.7
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 2.5e-23 112.8 100 62.0
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 2.5e-23 112.8 78 66.7
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.5e-23 112.8 78 66.7
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.3e-23 112.5 74 71.6
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 4.3e-23 112.1 77 68.8
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 5.6e-23 111.7 80 65.0
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 5.6e-23 111.7 74 73.0
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 7.4e-23 111.3 80 65.0
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 9.6e-23 110.9 78 66.7
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 1.3e-22 110.5 79 64.6
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 1.3e-22 110.5 84 63.1
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 1.6e-22 110.2 83 62.7
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 1.6e-22 110.2 76 67.1
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 2.8e-22 109.4 80 65.0
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 2.8e-22 109.4 77 66.2
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 3.7e-22 109.0 74 66.2
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 3.7e-22 109.0 76 67.1
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 3.7e-22 109.0 83 61.4
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 4.8e-22 108.6 107 54.2
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 6.2e-22 108.2 92 60.9
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 8.1e-22 107.8 105 55.2
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 1.4e-21 107.1 78 65.4
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 1.4e-21 107.1 78 65.4
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 1.4e-21 107.1 78 65.4
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 1.4e-21 107.1 83 60.2
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 1.8e-21 106.7 83 60.2
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.8e-21 106.7 76 67.1
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 1.8e-21 106.7 106 54.7
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 1.8e-21 106.7 74 67.6
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 1.8e-21 106.7 78 65.4
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 2.4e-21 106.3 106 52.8
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 2.4e-21 106.3 105 53.3
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 2.4e-21 106.3 105 53.3
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 4.0e-21 105.5 105 54.3
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 4.0e-21 105.5 105 54.3
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 4.0e-21 105.5 105 54.3
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 4.0e-21 105.5 72 69.4
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 5.3e-21 105.1 92 59.8
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 5.3e-21 105.1 106 50.9
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 6.9e-21 104.8 75 65.3
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 9.0e-21 104.4 90 55.6
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 9.0e-21 104.4 72 66.7
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 9.0e-21 104.4 72 66.7
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 9.0e-21 104.4 78 62.8
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 9.0e-21 104.4 70 70.0
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 1.2e-20 104.0 74 64.9
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 2.0e-20 103.2 74 66.2
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 2.6e-20 102.8 74 66.2
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 4.5e-20 102.1 98 58.2
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 4.5e-20 102.1 89 58.4
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 4.5e-20 102.1 72 68.1
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 7.6e-20 101.3 72 65.3
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 7.6e-20 101.3 84 58.3
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 7.6e-20 101.3 70 72.9
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 1.0e-19 100.9 80 62.5
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 1.0e-19 100.9 97 56.7
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 2.2e-19 99.8 75 65.3
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 2.2e-19 99.8 112 45.5
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 2.9e-19 99.4 74 63.5
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 6.5e-19 98.2 83 59.0
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 8.4e-19 97.8 92 59.8
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 1.9e-18 96.7 74 60.8
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 5.5e-18 95.1 106 44.3
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 3.5e-17 92.4 92 44.6
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 3.5e-17 92.4 72 61.1
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 4.6e-17 92.0 74 55.4
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 5.1e-16 88.6 93 45.2
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 5.1e-16 88.6 75 58.7
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 1.1e-13 80.9 92 46.7
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 3.1e-13 79.3 72 47.2
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 3.4e-12 75.9 49 77.6
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 4.5e-12 75.5 85 47.1
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 1.0e-11 74.3 105 40.0
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 2.2e-11 73.2 73 46.6
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 5.0e-11 72.0 63 77.8
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 9.3e-10 67.8 48 64.6
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 7.4e-07 58.2 84 44.0


User provided reference genes

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