Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 1.9e-92 342.4 168 100.0
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 1.3e-85 319.7 167 92.8
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 3.0e-85 318.5 168 92.3
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 9.6e-84 313.5 168 91.1
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 3.5e-78 295.0 166 86.7
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 2.7e-62 242.3 168 71.4
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 3.9e-61 238.4 168 69.0
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 8.7e-61 237.3 168 66.7
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 3.3e-60 235.3 168 69.0
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 3.3e-60 235.3 169 69.2
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 2.2e-59 232.6 168 69.0
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 4.1e-58 228.4 168 65.5
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 4.1e-58 228.4 168 66.7
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 5.3e-58 228.0 168 65.5
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 4.5e-57 224.9 165 65.5
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 4.5e-57 224.9 168 66.7
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 5.9e-57 224.6 168 66.7
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 7.7e-57 224.2 168 66.1
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.7e-56 223.0 168 66.1
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.7e-56 223.0 168 64.9
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 2.9e-56 222.2 166 66.3
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 3.8e-56 221.9 163 66.9
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 3.8e-56 221.9 168 66.7
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 6.5e-56 221.1 164 65.9
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 8.5e-56 220.7 163 65.0
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 1.1e-55 220.3 164 66.5
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 1.4e-55 219.9 165 66.1
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 1.9e-55 219.5 168 62.5
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.9e-55 219.5 168 65.5
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 9.4e-55 217.2 164 65.9
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 1.6e-54 216.5 163 63.8
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 2.1e-54 216.1 164 65.9
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 2.1e-54 216.1 163 65.0
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 2.7e-54 215.7 163 65.6
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 3.6e-54 215.3 163 65.6
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 4.6e-54 214.9 165 63.6
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 6.1e-54 214.5 165 63.6
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.4e-53 213.4 168 63.1
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.8e-53 213.0 168 63.7
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 3.0e-53 212.2 165 61.2
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 3.9e-53 211.8 172 63.4
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 6.7e-53 211.1 163 63.2
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 6.7e-53 211.1 163 62.6
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 6.7e-53 211.1 163 63.2
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 1.1e-52 210.3 163 62.6
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.5e-52 209.9 169 60.9
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 2.0e-52 209.5 164 65.2
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.0e-52 209.5 162 62.3
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 3.3e-52 208.8 163 63.2
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 4.3e-52 208.4 168 61.9
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 9.7e-52 207.2 164 64.6
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 2.2e-51 206.1 169 60.9
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 2.2e-51 206.1 163 61.3
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 2.2e-51 206.1 162 61.7
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.8e-51 205.7 169 62.7
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 2.8e-51 205.7 172 57.0
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 6.3e-51 204.5 162 61.1
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.1e-50 203.8 169 62.1
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.4e-50 203.4 169 61.5
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.4e-50 203.4 162 61.7
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 2.4e-50 202.6 163 62.6
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 4.1e-50 201.8 162 61.7
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 6.9e-50 201.1 164 62.8
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 9.1e-50 200.7 168 62.5
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 9.1e-50 200.7 158 61.4
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 1.2e-49 200.3 157 65.0
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 2.0e-49 199.5 158 62.0
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.6e-49 199.1 164 59.1
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 3.4e-49 198.7 172 60.5
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 3.4e-49 198.7 171 61.4
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 1.7e-48 196.4 168 60.7
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 2.9e-48 195.7 163 60.1
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 6.5e-48 194.5 165 61.8
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 6.5e-48 194.5 165 61.8
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.1e-47 193.7 165 60.6
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.1e-47 193.7 163 60.7
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 1.9e-47 193.0 165 62.4
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.9e-47 193.0 165 62.4
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.9e-47 193.0 167 60.5
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 3.2e-47 192.2 165 60.0
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 3.2e-47 192.2 165 61.2
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 3.2e-47 192.2 165 62.4
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 4.2e-47 191.8 165 58.8
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 4.2e-47 191.8 163 60.1
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 5.5e-47 191.4 163 58.9
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 2.1e-46 189.5 165 55.2
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 6.1e-46 188.0 164 61.0
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.4e-45 186.8 165 58.2
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 1.8e-45 186.4 164 59.8
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.3e-45 186.0 165 59.4
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 2.3e-45 186.0 166 58.4
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 2.3e-45 186.0 158 58.9
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 3.0e-45 185.7 164 54.9
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 6.7e-45 184.5 165 58.2
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.5e-44 183.3 167 56.3
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 4.4e-44 181.8 167 55.7
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 5.7e-44 181.4 165 58.8
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 1.7e-43 179.9 166 57.2
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.2e-43 179.5 169 59.2
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 2.8e-43 179.1 166 57.2
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 2.8e-43 179.1 166 57.2
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 2.8e-43 179.1 166 56.6
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 4.8e-43 178.3 168 56.0
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 8.2e-43 177.6 154 61.0
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 1.4e-42 176.8 166 56.6
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.4e-42 176.8 128 66.4
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 2.2e-40 169.5 169 55.6
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 3.8e-40 168.7 131 64.1
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 8.5e-40 167.5 155 54.8
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 4.2e-39 165.2 166 53.0
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.6e-38 163.3 123 63.4
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 2.1e-38 162.9 165 53.9
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 2.1e-38 162.9 165 53.9
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 5.2e-37 158.3 170 54.1
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 6.7e-37 157.9 136 57.4
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 8.8e-37 157.5 164 54.3
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 1.5e-36 156.8 125 61.6
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 5.7e-36 154.8 126 62.7
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 7.5e-36 154.5 170 53.5
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 1.3e-35 153.7 161 52.2
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.3e-35 153.7 170 53.5
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 1.1e-34 150.6 163 47.9
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 7.0e-34 147.9 129 58.9
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 5.9e-33 144.8 128 57.0
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 7.7e-33 144.4 168 48.8
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 6.5e-32 141.4 111 62.2
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.6e-30 136.7 156 45.5
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 2.7e-30 136.0 129 49.6
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 3.6e-30 135.6 119 57.1
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.3e-29 132.9 111 55.9
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 3.0e-29 132.5 158 41.8
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 1.2e-28 130.6 169 46.2
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 1.5e-28 130.2 97 61.9
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 7.5e-28 127.9 123 55.3
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 2.4e-26 122.9 155 46.5
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 3.1e-26 122.5 172 43.0
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 5.9e-25 118.2 64 93.8
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 7.7e-25 117.9 121 43.0
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 5.0e-24 115.2 63 82.5
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 9.4e-23 110.9 124 40.3
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 1.2e-22 110.5 133 41.4
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.2e-22 110.5 72 68.1
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 3.6e-22 109.0 65 75.4
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 2.3e-21 106.3 81 65.4
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 1.4e-18 97.1 134 40.3
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 1.0e-16 90.9 63 61.9
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.8e-13 80.1 162 35.2
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 5.2e-13 78.6 76 43.4
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 1.5e-12 77.0 87 48.3
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 7.5e-12 74.7 65 61.5
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.9e-11 72.8 79 49.4
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 8.3e-11 71.2 61 60.7
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.4e-10 70.5 62 59.7
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 2.4e-10 69.7 61 59.0
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 4.1e-10 68.9 57 61.4
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 4.1e-10 68.9 57 61.4
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 5.4e-10 68.6 63 44.4
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.2e-09 67.4 62 59.7
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.5e-09 65.9 53 62.3
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 7.8e-09 64.7 84 38.1
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 1.7e-08 63.5 65 36.9
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 3.9e-08 62.4 115 34.8
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 1.5e-07 60.5 125 32.8
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 2.5e-07 59.7 89 43.8
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 5.6e-07 58.5 44 54.5
AUR62010916 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.2e-06 57.4 42 64.3
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 1.6e-06 57.0 103 32.0
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 4.7e-06 55.5 61 54.1


User provided reference genes

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