Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 5.4e-251 870.5 442 100.0
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 1.3e-193 679.9 443 80.4
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 6.9e-190 667.5 443 79.7
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 1.3e-188 663.3 412 84.0
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 4.5e-181 638.3 439 77.4
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 2.9e-180 635.6 448 75.0
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 3.2e-179 632.1 450 74.9
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 2.1e-178 629.4 444 73.9
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 5.1e-177 624.8 450 72.7
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 5.7e-176 621.3 449 73.5
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 1.6e-175 619.8 452 73.2
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 2.8e-175 619.0 449 73.7
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 2.8e-175 619.0 447 73.4
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 3.7e-175 618.6 454 72.2
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 4.8e-175 618.2 408 79.9
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 2.4e-174 615.9 447 72.7
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 4.1e-174 615.1 445 71.5
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 5.3e-174 614.8 449 72.8
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 1.2e-173 613.6 479 68.9
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.5e-173 613.2 449 72.2
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 2.0e-173 612.8 448 73.0
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 2.0e-173 612.8 445 71.5
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 1.3e-172 610.1 445 71.2
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 1.7e-172 609.8 458 70.7
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 2.2e-172 609.4 450 72.0
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 5.0e-172 608.2 457 71.6
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 6.5e-172 607.8 450 71.1
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 1.1e-171 607.1 448 70.3
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.1e-171 607.1 448 71.0
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 4.2e-171 605.1 447 70.7
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 5.5e-171 604.7 449 72.2
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 5.5e-171 604.7 528 63.6
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 9.4e-171 604.0 447 70.7
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 4.6e-170 601.7 467 69.2
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 4.6e-170 601.7 447 70.2
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 1.0e-169 600.5 448 71.2
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 1.4e-169 600.1 450 70.0
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.4e-169 600.1 450 70.4
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 1.4e-169 600.1 448 70.8
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 1.8e-169 599.7 449 70.6
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.3e-169 599.4 451 71.0
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 3.9e-169 598.6 448 70.8
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 3.9e-169 598.6 448 70.8
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 6.7e-169 597.8 452 69.9
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 2.5e-168 595.9 448 70.8
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 3.3e-168 595.5 445 70.3
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 5.7e-168 594.7 447 69.8
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 1.3e-167 593.6 449 69.9
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 1.7e-167 593.2 447 69.4
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 2.2e-167 592.8 447 69.8
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 2.2e-167 592.8 452 70.1
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 2.2e-167 592.8 449 69.7
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 2.8e-167 592.4 447 69.6
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 3.7e-167 592.0 454 70.9
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 6.3e-167 591.3 447 69.6
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 6.3e-167 591.3 449 69.7
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.1e-166 590.5 446 70.2
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 1.8e-166 589.7 446 68.6
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 3.1e-166 589.0 438 71.0
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 3.1e-166 589.0 447 69.1
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 3.1e-166 589.0 449 70.4
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 5.3e-166 588.2 447 69.1
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 3.4e-165 585.5 431 74.7
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 5.9e-165 584.7 449 69.3
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.0e-164 583.9 447 68.7
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.0e-164 583.9 451 68.7
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 1.3e-164 583.6 448 68.3
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 1.3e-164 583.6 439 69.7
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 1.7e-164 583.2 446 68.2
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 1.7e-164 583.2 439 69.5
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 2.2e-164 582.8 456 67.5
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 2.9e-164 582.4 459 68.0
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 2.9e-164 582.4 450 69.1
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 2.9e-164 582.4 446 70.6
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 5.0e-164 581.6 449 67.7
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 5.0e-164 581.6 447 69.6
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.4e-163 580.1 451 68.5
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.4e-163 580.1 451 68.7
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 1.9e-163 579.7 447 69.4
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 3.2e-163 578.9 446 68.4
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 4.2e-163 578.6 448 69.2
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 5.5e-163 578.2 429 71.1
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 5.5e-163 578.2 451 68.5
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 7.2e-163 577.8 451 68.1
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 9.4e-163 577.4 451 67.8
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 9.4e-163 577.4 451 67.8
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 1.2e-162 577.0 445 68.1
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 1.2e-162 577.0 447 68.0
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 1.6e-162 576.6 449 67.7
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 4.7e-162 575.1 448 67.4
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 6.1e-162 574.7 451 68.3
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 7.9e-162 574.3 453 67.3
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 7.9e-162 574.3 452 68.1
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 1.8e-161 573.2 451 68.3
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 7.4e-160 567.8 449 68.6
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 2.8e-159 565.8 452 66.8
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 3.7e-159 565.5 468 66.9
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 3.7e-159 565.5 450 67.6
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 3.7e-159 565.5 462 66.7
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 4.8e-159 565.1 450 66.2
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 6.3e-159 564.7 449 67.3
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 2.4e-158 562.8 483 65.0
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 2.4e-158 562.8 448 68.3
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 4.1e-158 562.0 451 67.6
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 5.3e-158 561.6 438 67.8
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 9.1e-158 560.8 450 67.8
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 1.2e-157 560.5 470 66.8
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 2.6e-157 559.3 448 67.6
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 2.2e-156 556.2 470 65.3
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 6.5e-156 554.7 448 66.3
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 1.6e-154 550.1 514 58.6
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 2.1e-154 549.7 445 65.6
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 1.0e-153 547.4 448 65.4
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 8.8e-153 544.3 451 64.7
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 5.7e-152 541.6 451 64.3
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 4.1e-150 535.4 420 68.1
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 7.0e-150 534.6 438 66.4
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 2.5e-147 526.2 453 62.9
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 2.0e-144 516.5 423 64.5
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 2.6e-144 516.2 421 68.4
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.0e-141 506.5 444 62.8
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 5.9e-141 505.0 426 64.8
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 3.4e-136 489.2 431 61.0
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 3.7e-135 485.7 451 59.6
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 5.9e-133 478.4 458 57.9
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 1.9e-131 473.4 451 59.6
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 2.6e-128 463.0 454 57.5
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 8.6e-124 448.0 508 52.8
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.9e-123 446.8 396 61.1
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 3.4e-120 436.0 289 77.5
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 3.7e-119 432.6 317 74.1
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 7.0e-118 428.3 434 54.1
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 9.2e-118 427.9 336 66.1
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 2.9e-111 406.4 456 52.0
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 1.6e-109 400.6 455 51.0
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.5e-107 394.0 249 79.5
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 2.1e-106 390.2 316 68.0
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 6.2e-106 388.7 457 49.5
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 2.1e-101 373.6 455 49.2
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 3.8e-87 326.2 327 58.1
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 3.4e-80 303.1 449 43.0
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 1.4e-78 297.7 194 74.2
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 1.0e-76 291.6 192 74.5
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 1.9e-75 287.3 194 73.2
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 1.8e-73 280.8 515 38.8
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 5.3e-73 279.3 279 58.8
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 7.6e-72 275.4 306 50.7
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 2.3e-68 263.8 217 61.8
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 2.9e-63 246.9 158 80.4
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 3.8e-63 246.5 234 60.3
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.6e-61 241.1 200 63.5
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 2.8e-50 203.8 120 81.7
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 3.1e-49 200.3 185 63.2
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 5.3e-49 199.5 256 50.0
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 1.5e-48 198.0 170 57.6
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.6e-45 188.0 130 71.5
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 2.2e-42 177.6 318 36.5
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 1.1e-41 175.3 216 50.0
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 3.1e-41 173.7 137 63.5
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 9.1e-41 172.2 297 37.4
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 1.5e-40 171.4 265 43.0
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 8.5e-39 165.6 289 37.0
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 6.7e-36 156.0 162 53.7
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 6.3e-34 149.4 155 54.8
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 2.0e-27 127.9 79 73.4
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 1.3e-26 125.2 87 67.8
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 8.3e-26 122.5 124 60.5
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.2e-24 118.6 79 81.0
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 3.2e-22 110.5 110 61.8
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 1.8e-20 104.8 155 49.0
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 4.4e-19 100.1 107 58.9
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 6.3e-18 96.3 74 67.6
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 3.1e-17 94.0 51 88.2
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 1.4e-12 78.6 52 75.0
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 2.9e-10 70.9 43 79.1
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 3.7e-10 70.5 76 57.9
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 6.4e-10 69.7 62 62.9
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.8e-09 68.2 49 69.4
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 2.4e-09 67.8 63 55.6
TWI63G1527 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 4.6e-08 63.5 154 31.2
Lsat_1_v5_gn_6_25880 Lactuca sativa HOM05D000267 ORTHO05D029881 8.6e-07 59.3 35 85.7
Glyma.02G160100 Glycine max HOM05D002054 ORTHO05D005362 1.9e-06 58.2 147 29.3
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 1.9e-06 58.2 28 85.7
TWI38G0197 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 2.5e-06 57.8 154 30.5
Lsat_1_v5_gn_5_45480 Lactuca sativa HOM05D002054 ORTHO05D004936 4.3e-06 57.0 153 29.4


User provided reference genes

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