Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 1.1e-116 423.3 215 100.0
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 8.0e-67 257.7 216 67.1
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 1.0e-66 257.3 227 61.7
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 4.0e-66 255.4 230 60.4
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 3.7e-64 248.8 229 60.3
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 3.7e-64 248.8 229 60.3
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 9.2e-63 244.2 228 58.8
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 1.6e-62 243.4 228 57.9
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 1.6e-62 243.4 228 57.9
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 5.9e-62 241.5 224 59.8
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 1.7e-61 240.0 230 61.3
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 6.6e-61 238.0 229 60.3
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 1.2e-59 233.8 228 58.8
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 3.6e-59 232.3 229 59.0
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 3.6e-59 232.3 228 58.3
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 4.7e-59 231.9 227 56.8
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 6.1e-59 231.5 228 57.9
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 1.8e-58 229.9 228 57.0
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 4.0e-58 228.8 172 68.0
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 6.8e-58 228.0 231 57.1
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 6.8e-58 228.0 229 58.1
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 8.9e-58 227.6 226 55.8
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 8.9e-58 227.6 228 56.6
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 2.0e-57 226.5 229 55.5
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 2.0e-57 226.5 232 56.5
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 2.6e-57 226.1 228 57.0
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 1.7e-56 223.4 223 54.7
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 3.7e-56 222.2 228 58.3
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 1.8e-55 219.9 157 72.0
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 3.2e-55 219.2 168 69.6
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 4.1e-55 218.8 231 56.3
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 4.1e-55 218.8 230 52.6
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 5.4e-55 218.4 228 54.8
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 7.0e-55 218.0 229 54.6
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 9.2e-55 217.6 228 55.3
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 1.2e-54 217.2 181 65.7
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 1.2e-54 217.2 230 56.5
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 1.6e-54 216.9 226 55.3
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.0e-54 216.5 228 56.6
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 3.5e-54 215.7 229 54.1
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 3.5e-54 215.7 223 53.8
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 4.6e-54 215.3 231 55.4
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 4.6e-54 215.3 225 56.0
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 5.9e-54 214.9 227 56.4
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 7.8e-54 214.5 196 58.2
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 1.0e-53 214.2 227 54.6
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 1.3e-53 213.8 157 70.7
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.3e-53 213.0 157 70.1
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 2.3e-53 213.0 229 55.0
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 3.0e-53 212.6 168 66.1
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 3.9e-53 212.2 229 54.1
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 6.6e-53 211.5 226 53.5
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 6.6e-53 211.5 157 69.4
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 6.6e-53 211.5 157 69.4
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 8.6e-53 211.1 155 68.4
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 1.1e-52 210.7 228 53.9
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 1.1e-52 210.7 157 67.5
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 1.1e-52 210.7 235 54.0
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.5e-52 210.3 168 64.3
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.9e-52 209.9 201 57.2
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 2.5e-52 209.5 228 53.9
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 5.6e-52 208.4 222 55.4
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 7.3e-52 208.0 157 68.2
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 7.3e-52 208.0 236 53.0
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 7.3e-52 208.0 230 53.0
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 1.2e-51 207.2 157 66.9
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 1.2e-51 207.2 223 55.2
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 2.8e-51 206.1 169 63.3
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 2.8e-51 206.1 228 53.9
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 4.7e-51 205.3 156 66.7
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 6.2e-51 204.9 227 52.0
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 6.2e-51 204.9 232 52.6
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 8.0e-51 204.5 228 49.1
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 8.0e-51 204.5 229 52.8
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 1.0e-50 204.1 238 51.3
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.0e-50 204.1 235 50.6
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 1.0e-50 204.1 229 51.5
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 1.0e-50 204.1 228 53.5
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 1.4e-50 203.8 172 62.2
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 2.3e-50 203.0 150 70.0
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 2.3e-50 203.0 165 62.4
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 3.1e-50 202.6 230 53.5
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 4.0e-50 202.2 134 76.1
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 4.0e-50 202.2 172 61.6
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 4.0e-50 202.2 226 53.1
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 4.0e-50 202.2 228 51.3
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 6.8e-50 201.4 154 65.6
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 8.9e-50 201.1 176 59.1
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.2e-49 200.7 179 58.7
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 1.5e-49 200.3 226 51.8
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.5e-49 200.3 171 64.9
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 3.4e-49 199.1 149 69.1
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 3.4e-49 199.1 195 55.4
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 4.4e-49 198.7 234 53.0
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 5.8e-49 198.4 235 49.8
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 5.8e-49 198.4 165 64.8
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 9.8e-49 197.6 199 57.8
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 9.8e-49 197.6 222 53.6
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 1.3e-48 197.2 231 53.2
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.2e-48 196.4 169 62.1
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 3.7e-48 195.7 202 56.4
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 3.7e-48 195.7 225 52.4
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 3.7e-48 195.7 154 66.2
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 4.9e-48 195.3 228 52.2
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 4.9e-48 195.3 228 52.2
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 4.9e-48 195.3 229 52.0
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 6.4e-48 194.9 154 65.6
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 6.4e-48 194.9 154 65.6
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 8.3e-48 194.5 155 65.2
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 8.3e-48 194.5 234 50.9
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 1.4e-47 193.7 202 54.0
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 1.4e-47 193.7 154 64.9
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 2.4e-47 193.0 230 52.2
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 4.1e-47 192.2 154 64.3
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 7.0e-47 191.4 154 64.9
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 7.0e-47 191.4 202 53.5
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 6.0e-46 188.3 205 52.2
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 1.0e-45 187.6 145 66.9
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 1.5e-44 183.7 230 48.7
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 3.3e-44 182.6 150 62.7
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 4.3e-44 182.2 222 50.9
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 1.2e-43 180.6 149 63.8
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 1.6e-43 180.3 208 50.5
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 2.1e-43 179.9 152 63.2
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 8.1e-43 177.9 216 50.5
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.6e-41 172.9 201 50.7
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 1.3e-40 170.6 201 50.7
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 4.9e-40 168.7 226 46.0
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 4.9e-40 168.7 227 45.8
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 1.1e-39 167.5 169 56.8
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 2.4e-39 166.4 225 45.3
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 2.4e-39 166.4 127 66.1
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 5.1e-37 158.7 230 41.7
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.9e-36 156.8 233 44.6
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 1.9e-36 156.8 233 44.6
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 9.5e-36 154.5 193 48.2
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.6e-35 153.7 230 40.9
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 1.8e-34 150.2 172 48.8
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 5.8e-33 145.2 108 67.6
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 6.4e-32 141.7 130 60.8
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.9e-31 140.2 144 52.8
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 4.6e-30 135.6 98 71.4
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 7.8e-30 134.8 132 53.8
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 1.3e-29 134.0 102 67.6
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 3.9e-29 132.5 162 48.8
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 2.1e-27 126.7 99 60.6
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 2.4e-26 123.2 201 37.3
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 2.1e-22 110.2 150 44.7
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 8.1e-19 98.2 71 69.0
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 4.0e-18 95.9 80 62.5
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 1.9e-15 87.0 67 65.7
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 2.1e-14 83.6 98 49.0
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 4.6e-14 82.4 94 50.0
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 6.0e-14 82.0 103 40.8
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 3.0e-13 79.7 63 60.3
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 1.3e-11 74.3 94 40.4
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 8.1e-11 71.6 104 40.4


User provided reference genes

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