Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 3.7e-45 184.5 93 100.0
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 2.0e-38 162.2 91 90.1
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 3.6e-32 141.4 93 76.3
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 5.4e-28 127.5 93 67.7
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 3.5e-27 124.8 91 69.2
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 4.6e-27 124.4 86 70.9
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 2.5e-25 118.6 92 62.0
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 5.6e-25 117.5 91 60.4
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 7.3e-25 117.1 90 62.2
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 9.5e-25 116.7 90 62.2
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 2.1e-24 115.5 89 65.2
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 2.8e-24 115.2 89 65.2
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 2.8e-24 115.2 90 62.2
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 3.6e-24 114.8 90 62.2
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 3.6e-24 114.8 91 56.0
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 4.7e-24 114.4 90 62.2
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 4.7e-24 114.4 90 62.2
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 8.1e-24 113.6 90 62.2
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.8e-23 112.5 92 59.8
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 2.3e-23 112.1 84 64.3
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 3.1e-23 111.7 90 60.0
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 4.0e-23 111.3 86 59.3
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 4.0e-23 111.3 91 61.5
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 5.2e-23 110.9 90 60.0
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 5.2e-23 110.9 83 62.7
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 5.2e-23 110.9 83 62.7
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 5.2e-23 110.9 83 62.7
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 6.8e-23 110.5 89 60.7
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 6.8e-23 110.5 84 64.3
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 8.9e-23 110.2 90 56.7
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 8.9e-23 110.2 86 59.3
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.2e-22 109.8 83 62.7
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.2e-22 109.8 83 62.7
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 1.2e-22 109.8 84 61.9
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 1.2e-22 109.8 90 58.9
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.0e-22 109.0 88 56.8
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 2.6e-22 108.6 88 55.7
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.6e-22 108.6 88 55.7
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 2.6e-22 108.6 91 61.5
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 3.4e-22 108.2 90 54.4
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 3.4e-22 108.2 88 55.7
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 3.4e-22 108.2 90 57.8
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 5.8e-22 107.5 89 60.7
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 5.8e-22 107.5 83 62.7
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 5.8e-22 107.5 89 59.6
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 1.3e-21 106.3 83 57.8
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.3e-21 106.3 88 54.5
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 1.7e-21 105.9 84 61.9
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 1.7e-21 105.9 91 58.2
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 2.2e-21 105.5 89 58.4
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 2.9e-21 105.1 92 57.6
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 2.9e-21 105.1 83 60.2
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 4.9e-21 104.4 82 59.8
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 4.9e-21 104.4 83 59.0
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 6.4e-21 104.0 84 57.1
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 6.4e-21 104.0 88 56.8
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 6.4e-21 104.0 90 60.0
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 6.4e-21 104.0 87 58.6
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 8.4e-21 103.6 83 61.4
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 1.1e-20 103.2 83 61.4
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 1.1e-20 103.2 88 56.8
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.4e-20 102.8 86 59.3
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 1.4e-20 102.8 90 54.4
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.4e-20 102.8 88 56.8
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.4e-20 102.8 88 56.8
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.9e-20 102.4 82 57.3
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 1.9e-20 102.4 85 61.2
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 2.4e-20 102.1 86 58.1
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 3.2e-20 101.7 76 65.8
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 3.2e-20 101.7 84 56.0
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 3.2e-20 101.7 88 53.4
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 4.1e-20 101.3 81 59.3
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 5.4e-20 100.9 84 60.7
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 7.1e-20 100.5 85 55.3
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 7.1e-20 100.5 91 52.7
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 7.1e-20 100.5 87 56.3
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 9.2e-20 100.1 82 57.3
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 9.2e-20 100.1 89 59.6
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 1.6e-19 99.4 81 58.0
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 1.6e-19 99.4 85 54.1
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 2.1e-19 99.0 83 54.2
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 2.1e-19 99.0 80 66.2
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 2.1e-19 99.0 87 57.5
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 2.1e-19 99.0 87 57.5
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 2.1e-19 99.0 89 55.1
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 4.6e-19 97.8 88 52.3
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 6.0e-19 97.4 87 55.2
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 1.3e-18 96.3 87 54.0
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 1.7e-18 95.9 78 59.0
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 2.3e-18 95.5 83 57.8
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 3.0e-18 95.1 89 49.4
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 5.1e-18 94.4 91 47.3
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 2.5e-17 92.0 76 59.2
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 5.6e-17 90.9 69 63.8
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 1.2e-16 89.7 68 63.2
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 2.8e-16 88.6 82 50.0
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 2.8e-16 88.6 69 60.9
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 6.2e-16 87.4 89 46.1
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 8.1e-16 87.0 88 46.6
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 1.1e-15 86.7 83 53.0
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 1.1e-15 86.7 83 53.0
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 1.4e-15 86.3 80 52.5
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 2.4e-15 85.5 83 53.0
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 4.0e-15 84.7 83 51.8
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 5.2e-15 84.3 82 50.0
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 5.2e-15 84.3 82 50.0
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 5.2e-15 84.3 77 54.5
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 2.0e-14 82.4 83 49.4
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 2.6e-14 82.0 80 51.2
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 3.4e-14 81.6 80 51.2
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 3.4e-14 81.6 90 44.4
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 3.4e-14 81.6 87 44.8
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 4.4e-14 81.3 80 51.2
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 4.4e-14 81.3 83 48.2
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 7.6e-14 80.5 80 50.0
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 7.6e-14 80.5 80 51.2
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 7.6e-14 80.5 80 50.0
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 7.6e-14 80.5 80 51.2
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 9.9e-14 80.1 80 51.2
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 1.3e-13 79.7 83 48.2
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 1.7e-13 79.3 80 50.0
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 2.2e-13 79.0 80 50.0
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 2.2e-13 79.0 80 50.0
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 2.2e-13 79.0 80 50.0
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 2.2e-13 79.0 80 50.0
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 2.2e-13 79.0 80 50.0
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 3.8e-13 78.2 82 48.8
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 4.9e-13 77.8 80 50.0
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 6.4e-13 77.4 80 48.8
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 1.9e-12 75.9 79 48.1
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 1.9e-12 75.9 72 51.4
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 2.4e-12 75.5 80 47.5
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 1.6e-11 72.8 80 45.0
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 2.1e-11 72.4 73 49.3
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 2.1e-11 72.4 73 49.3
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 2.1e-11 72.4 62 54.8
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 2.7e-11 72.0 73 49.3
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 2.7e-11 72.0 93 41.9
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 6.0e-11 70.9 73 47.9
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 7.8e-11 70.5 62 61.3
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 8.7e-10 67.0 79 40.5
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 1.5e-09 66.2 81 45.7
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 2.1e-08 62.4 83 43.4
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 4.0e-07 58.2 65 44.6
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 4.0e-07 58.2 56 51.8
BcaC03g15765 Brassica carinata HOM05D004709 ORTHO05D005669 1.2e-06 56.6 82 41.5
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 7.6e-06 53.9 66 43.9


User provided reference genes

Program Settings