Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 1.2e-136 490.0 265 100.0
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 9.4e-110 400.6 256 85.2
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 7.0e-105 384.4 256 82.8
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 3.5e-104 382.1 264 80.7
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 1.0e-103 380.6 264 80.7
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 2.9e-103 379.0 264 80.7
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 2.9e-103 379.0 261 80.5
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 3.8e-103 378.6 264 78.8
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 6.5e-103 377.9 264 78.4
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 6.5e-103 377.9 264 78.4
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 6.5e-103 377.9 264 78.4
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 8.5e-103 377.5 264 79.9
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 8.5e-103 377.5 264 79.5
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 8.5e-103 377.5 264 79.5
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 8.5e-103 377.5 264 79.9
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.1e-102 377.1 264 80.7
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 1.9e-102 376.3 264 79.5
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.5e-102 375.9 264 79.2
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 2.5e-102 375.9 261 78.5
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 4.2e-102 375.2 264 80.3
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 5.5e-102 374.8 264 77.7
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 7.2e-102 374.4 265 78.1
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 1.2e-101 373.6 261 78.2
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 1.2e-101 373.6 264 79.5
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 1.6e-101 373.2 264 78.8
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 2.1e-101 372.9 264 77.3
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 2.7e-101 372.5 264 78.4
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 4.7e-101 371.7 264 77.7
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 6.1e-101 371.3 274 75.5
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 6.1e-101 371.3 264 78.4
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 6.1e-101 371.3 264 78.0
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 6.1e-101 371.3 264 79.2
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 1.0e-100 370.5 266 77.1
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.0e-100 370.5 264 77.3
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 1.0e-100 370.5 266 78.6
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 1.4e-100 370.2 264 76.9
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 1.4e-100 370.2 265 78.1
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 1.8e-100 369.8 264 75.8
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 1.8e-100 369.8 264 78.8
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 1.8e-100 369.8 264 76.1
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 2.3e-100 369.4 264 76.9
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 2.3e-100 369.4 264 76.9
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 2.3e-100 369.4 264 76.1
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 3.0e-100 369.0 264 75.4
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.0e-100 369.0 264 75.8
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 4.0e-100 368.6 264 78.4
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 4.0e-100 368.6 273 75.1
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 4.0e-100 368.6 264 75.8
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 5.2e-100 368.2 265 76.6
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 5.2e-100 368.2 266 77.8
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 6.8e-100 367.9 264 78.0
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 6.8e-100 367.9 264 78.0
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.2e-99 367.1 264 77.3
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.2e-99 367.1 264 75.4
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 2.0e-99 366.3 264 75.8
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 2.6e-99 365.9 264 76.5
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 3.4e-99 365.5 264 76.1
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 5.7e-99 364.8 264 75.4
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 5.7e-99 364.8 264 76.5
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 9.8e-99 364.0 264 75.4
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.3e-98 363.6 265 76.2
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 1.3e-98 363.6 264 76.5
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.3e-98 363.6 264 76.5
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.3e-98 363.6 264 77.7
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 1.7e-98 363.2 264 75.0
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.7e-98 363.2 264 75.0
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 1.7e-98 363.2 256 77.3
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 1.7e-98 363.2 264 75.8
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 2.2e-98 362.8 264 76.1
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 2.8e-98 362.5 261 77.0
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 2.8e-98 362.5 264 76.1
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 2.8e-98 362.5 264 73.9
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 2.8e-98 362.5 264 76.1
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 3.7e-98 362.1 264 75.8
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 3.7e-98 362.1 264 75.8
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 4.8e-98 361.7 264 76.1
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 4.8e-98 361.7 225 85.3
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 4.8e-98 361.7 259 76.4
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 4.8e-98 361.7 264 76.1
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 8.3e-98 360.9 264 75.8
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 8.3e-98 360.9 259 76.4
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 8.3e-98 360.9 264 76.1
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 1.1e-97 360.5 264 75.4
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 1.4e-97 360.1 264 76.1
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 1.4e-97 360.1 256 76.6
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 1.8e-97 359.8 265 74.3
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 3.1e-97 359.0 268 74.3
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 4.1e-97 358.6 264 73.5
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 4.1e-97 358.6 264 76.9
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 4.1e-97 358.6 264 75.8
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 5.4e-97 358.2 264 76.5
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 1.2e-96 357.1 264 75.4
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 1.6e-96 356.7 263 74.9
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.7e-96 355.9 264 74.2
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 2.7e-96 355.9 264 75.4
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 2.7e-96 355.9 264 75.4
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 5.9e-96 354.8 264 73.9
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 1.0e-95 354.0 257 77.0
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 5.0e-95 351.7 264 72.0
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 6.6e-95 351.3 264 74.2
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 6.6e-95 351.3 274 73.0
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 1.1e-94 350.5 264 72.0
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.1e-94 350.5 225 84.0
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 1.1e-94 350.5 263 74.9
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.5e-94 349.4 265 73.2
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 3.3e-94 349.0 264 73.5
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 6.1e-93 344.7 246 77.2
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 1.4e-92 343.6 251 77.7
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 1.4e-92 343.6 251 77.7
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 9.8e-91 337.4 210 83.3
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 6.3e-90 334.7 266 68.8
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 6.3e-90 334.7 264 70.8
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 1.8e-89 333.2 264 70.1
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 1.8e-89 333.2 264 70.1
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 1.8e-89 333.2 264 70.1
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 1.8e-89 333.2 264 70.1
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 2.4e-89 332.8 264 70.1
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 2.4e-89 332.8 264 70.1
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 2.4e-89 332.8 264 70.5
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 4.1e-89 332.0 264 70.1
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 5.4e-89 331.6 264 69.7
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 5.4e-89 331.6 264 69.7
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 5.4e-89 331.6 241 75.5
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 9.2e-89 330.9 264 70.1
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 1.2e-88 330.5 264 69.3
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 1.6e-88 330.1 264 69.7
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 1.6e-88 330.1 264 69.7
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 1.6e-88 330.1 264 69.3
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 2.0e-88 329.7 265 69.1
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 2.0e-88 329.7 264 69.3
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 2.0e-88 329.7 265 69.1
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 2.0e-88 329.7 265 69.1
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 3.9e-87 325.5 271 68.3
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 6.6e-87 324.7 219 76.3
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 6.6e-87 324.7 223 72.6
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 1.5e-86 323.6 271 67.5
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 4.7e-85 318.5 256 66.4
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 6.1e-85 318.2 225 76.4
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.0e-84 317.4 227 75.3
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 3.4e-83 312.4 256 65.2
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 6.4e-82 308.1 264 66.7
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 2.4e-81 306.2 224 72.3
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 3.2e-81 305.8 264 67.4
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 7.0e-81 304.7 250 67.2
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 3.6e-77 292.4 232 66.4
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 3.7e-74 282.3 219 63.5
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 4.6e-72 275.4 264 60.2
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 5.1e-71 271.9 201 73.1
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 3.3e-70 269.2 268 56.3
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 2.1e-69 266.5 202 67.8
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 8.9e-68 261.2 211 66.4
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 7.1e-65 251.5 228 62.7
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 5.1e-63 245.4 219 65.8
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 1.6e-61 240.4 224 63.4
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 2.8e-61 239.6 249 59.4
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.1e-60 236.1 263 57.8
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 6.0e-56 221.9 265 52.1
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 4.0e-52 209.1 239 50.6
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 9.0e-52 208.0 240 50.0
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 5.8e-51 205.3 131 80.9
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.7e-48 196.4 118 87.3
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 6.2e-45 185.3 237 54.4
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 7.1e-41 171.8 180 57.2
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 5.6e-38 162.2 139 66.2
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 2.1e-32 143.7 128 64.8
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.6e-29 134.0 119 66.4
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 1.0e-23 114.8 68 88.2
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 6.3e-21 105.5 168 43.5
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.3e-18 97.8 97 59.8


User provided reference genes

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