Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 7.5e-36 153.3 76 100.0
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 1.5e-23 112.5 56 98.2
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 7.3e-23 110.2 56 94.6
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 3.1e-21 104.8 56 89.3
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 8.9e-21 103.2 54 90.7
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 1.5e-20 102.4 53 92.5
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 5.8e-20 100.5 52 92.3
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 5.8e-20 100.5 58 86.2
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 7.5e-20 100.1 55 85.5
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 7.5e-20 100.1 51 96.1
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.3e-19 99.4 54 88.9
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.7e-19 99.0 58 84.5
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 2.2e-19 98.6 58 84.5
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 2.2e-19 98.6 51 92.2
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 3.7e-19 97.8 56 85.7
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 6.4e-19 97.1 58 84.5
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 1.1e-18 96.3 58 81.0
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 1.1e-18 96.3 58 81.0
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.4e-18 95.9 58 82.8
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.4e-18 95.9 58 82.8
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.4e-18 95.9 58 84.5
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 1.4e-18 95.9 52 86.5
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.9e-18 95.5 53 88.7
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 1.9e-18 95.5 58 82.8
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.9e-18 95.5 58 82.8
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 1.9e-18 95.5 52 88.5
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.4e-18 95.1 52 86.5
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 2.4e-18 95.1 58 81.0
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 2.4e-18 95.1 58 81.0
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 2.4e-18 95.1 58 81.0
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 3.2e-18 94.7 56 82.1
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 4.1e-18 94.4 55 81.8
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 4.1e-18 94.4 58 81.0
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 5.4e-18 94.0 53 86.8
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 5.4e-18 94.0 55 83.6
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 5.4e-18 94.0 58 82.8
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.4e-18 94.0 58 82.8
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.4e-18 94.0 58 82.8
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.4e-18 94.0 58 82.8
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 5.4e-18 94.0 58 82.8
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 5.4e-18 94.0 55 81.8
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 7.1e-18 93.6 55 83.6
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 7.1e-18 93.6 58 82.8
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 9.2e-18 93.2 56 80.4
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 9.2e-18 93.2 56 80.4
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 9.2e-18 93.2 56 80.4
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 9.2e-18 93.2 56 78.6
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 1.2e-17 92.8 59 81.4
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.2e-17 92.8 52 82.7
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 1.2e-17 92.8 53 84.9
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 1.6e-17 92.4 58 81.0
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.6e-17 92.4 58 81.0
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.6e-17 92.4 58 81.0
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 1.6e-17 92.4 56 78.6
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 2.1e-17 92.0 53 83.0
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 2.1e-17 92.0 53 83.0
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 2.1e-17 92.0 58 81.0
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 2.7e-17 91.7 56 78.6
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 2.7e-17 91.7 58 79.3
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 2.7e-17 91.7 53 84.9
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 2.7e-17 91.7 52 84.6
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 2.7e-17 91.7 56 76.8
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 3.5e-17 91.3 59 79.7
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 3.5e-17 91.3 56 78.6
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 3.5e-17 91.3 56 76.8
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 4.6e-17 90.9 58 81.0
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 4.6e-17 90.9 56 76.8
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 4.6e-17 90.9 56 76.8
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 6.0e-17 90.5 58 77.6
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 6.0e-17 90.5 51 80.4
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 6.0e-17 90.5 52 84.6
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 6.0e-17 90.5 56 76.8
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 6.0e-17 90.5 55 78.2
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 6.0e-17 90.5 52 80.8
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 6.0e-17 90.5 52 80.8
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 6.0e-17 90.5 53 77.4
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 7.8e-17 90.1 58 77.6
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 7.8e-17 90.1 51 84.3
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 7.8e-17 90.1 52 82.7
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 7.8e-17 90.1 53 79.2
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 1.0e-16 89.7 58 77.6
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 1.0e-16 89.7 58 77.6
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 1.0e-16 89.7 58 77.6
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 1.0e-16 89.7 58 77.6
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 1.0e-16 89.7 55 78.2
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 1.3e-16 89.4 58 77.6
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 1.3e-16 89.4 58 77.6
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 1.3e-16 89.4 58 77.6
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 1.3e-16 89.4 58 77.6
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 1.3e-16 89.4 58 77.6
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 1.3e-16 89.4 58 77.6
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 1.3e-16 89.4 58 77.6
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 1.3e-16 89.4 58 77.6
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 1.3e-16 89.4 58 77.6
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 1.3e-16 89.4 58 77.6
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 1.3e-16 89.4 56 75.0
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 1.3e-16 89.4 56 75.0
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 1.3e-16 89.4 56 75.0
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 1.3e-16 89.4 58 77.6
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 1.3e-16 89.4 55 74.5
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 1.7e-16 89.0 55 76.4
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 2.3e-16 88.6 52 80.8
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 2.3e-16 88.6 58 75.9
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 2.3e-16 88.6 58 75.9
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 2.3e-16 88.6 56 73.2
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 3.0e-16 88.2 52 76.9
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 3.0e-16 88.2 58 77.6
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 3.0e-16 88.2 50 86.0
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 3.9e-16 87.8 58 75.9
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 3.9e-16 87.8 51 82.4
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 3.9e-16 87.8 51 82.4
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 3.9e-16 87.8 60 70.0
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 5.1e-16 87.4 52 75.0
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 5.1e-16 87.4 52 75.0
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 5.1e-16 87.4 52 78.8
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 5.1e-16 87.4 58 75.9
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 1.5e-15 85.9 53 77.4
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.5e-15 85.9 58 75.9
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 1.5e-15 85.9 51 80.4
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 1.5e-15 85.9 56 69.6
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 2.5e-15 85.1 53 75.5
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 5.6e-15 84.0 51 78.4
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 9.5e-15 83.2 52 75.0
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.1e-14 82.0 58 72.4
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 3.6e-14 81.3 46 87.0
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 1.4e-13 79.3 58 70.7
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 9.9e-12 73.2 44 84.1
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.8e-11 71.2 46 80.4
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 1.2e-09 66.2 50 60.0
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 2.7e-09 65.1 56 55.4
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 6.0e-09 63.9 56 57.1
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 2.3e-08 62.0 52 50.0
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-07 58.9 50 52.0
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 4.3e-07 57.8 56 51.8
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 2.8e-06 55.1 52 53.8
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 6.2e-06 53.9 31 71.0
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 6.2e-06 53.9 31 71.0


User provided reference genes

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