Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0542451 Helianthus annuus HOM05D001640 ORTHO05D001612 3.5e-127 458.4 243 100.0
Lsat_1_v5_gn_1_124741 Lactuca sativa HOM05D001640 ORTHO05D001612 8.0e-31 138.3 324 41.0
ECA248G2763 Erigeron canadensis HOM05D001640 ORTHO05D001612 1.3e-25 120.9 162 53.1
Lj2A282T46 Lonicera japonica HOM05D001640 ORTHO05D001612 1.3e-20 104.4 288 33.3
vmacro03829 Vaccinium macrocarpon HOM05D001640 ORTHO05D001612 3.2e-19 99.8 305 34.1
vmacro23296 Vaccinium macrocarpon HOM05D001640 ORTHO05D001612 3.2e-19 99.8 305 34.1
Hma1.2p1_0144F.1_g064810 Hydrangea macrophylla HOM05D001640 ORTHO05D001612 3.5e-18 96.3 316 34.5
ECA234G2730 Erigeron canadensis HOM05D001640 ORTHO05D001612 4.5e-18 95.9 153 45.1
HanXRQChr16g0517791 Helianthus annuus HOM05D001640 ORTHO05D001612 7.8e-18 95.1 308 35.7
Gohir.D10G021000 Gossypium hirsutum HOM05D001640 ORTHO05D001612 1.0e-17 94.7 311 35.0
Gorai.011G022100 Gossypium raimondii HOM05D001640 ORTHO05D001612 1.0e-17 94.7 311 35.0
Actinidia05587 Actinidia chinensis HOM05D001640 ORTHO05D001612 5.0e-17 92.4 288 33.7
Gohir.A10G020200 Gossypium hirsutum HOM05D001640 ORTHO05D001612 5.0e-17 92.4 311 33.8
Ciclev10016038m.g Citrus clementina HOM05D001640 ORTHO05D001612 6.6e-17 92.0 306 33.7
Sabra11G0030500 Salix brachista HOM05D001640 ORTHO05D001612 1.5e-16 90.9 204 41.2
Rhsim13G0174000 Rhododendron simsii HOM05D001640 ORTHO05D001612 2.5e-16 90.1 173 42.2
Gohir.A05G164700 Gossypium hirsutum HOM05D001640 ORTHO05D001612 9.5e-16 88.2 309 33.3
Manes.17G040000 Manihot esculenta HOM05D001640 ORTHO05D001612 9.5e-16 88.2 155 40.6
Gorai.009G172800 Gossypium raimondii HOM05D001640 ORTHO05D001612 2.1e-15 87.0 310 32.3
TWI38G0775 Tripterygium wilfordii HOM05D001640 ORTHO05D001612 3.6e-15 86.3 155 43.9
Lsat_1_v5_gn_4_57221 Lactuca sativa HOM05D001640 ORTHO05D001612 6.1e-15 85.5 337 29.4
Thhalv10023538m.g Eutrema salsugineum HOM05D001640 ORTHO05D001612 2.3e-14 83.6 162 40.7
Thecc.06G197500 Theobroma cacao HOM05D001640 ORTHO05D001612 3.1e-14 83.2 319 31.0
Cpa.g.sc27.111 Carica papaya HOM05D001640 ORTHO05D001612 4.0e-14 82.8 157 41.4
Lsat_1_v5_gn_7_19801 Lactuca sativa HOM05D001640 ORTHO05D001612 4.0e-14 82.8 187 35.8
Manes.16G021700 Manihot esculenta HOM05D001640 ORTHO05D001612 4.0e-14 82.8 156 42.9
Sp2g03200 Schrenkiella parvula HOM05D001640 ORTHO05D001612 4.0e-14 82.8 160 40.0
Duzib235G0541 Durio zibethinus HOM05D001640 ORTHO05D001612 8.9e-14 81.6 319 30.7
CARHR051340 Cardamine hirsuta HOM05D001640 ORTHO05D001612 3.4e-13 79.7 161 39.8
BraA09t37318Z Brassica rapa HOM05D001640 ORTHO05D001612 4.4e-13 79.3 159 37.1
CiPaw.09G159200 Carya illinoinensis HOM05D001640 ORTHO05D001612 5.8e-13 79.0 166 40.4
CAN.G162.103 Capsicum annuum HOM05D001640 ORTHO05D001612 7.5e-13 78.6 151 39.7
Duzib192G0891 Durio zibethinus HOM05D001640 ORTHO05D001612 9.8e-13 78.2 301 31.9
Solyc02g079010.4 Solanum lycopersicum HOM05D001640 ORTHO05D001612 9.8e-13 78.2 149 40.9
Lalb_Chr25g0286731 Lupinus albus HOM05D001640 ORTHO05D001612 1.3e-12 77.8 156 43.6
Sopen02g023820 Solanum pennellii HOM05D001640 ORTHO05D001612 1.7e-12 77.4 320 32.2
Migut.M01202 Erythranthe guttata HOM05D001640 ORTHO05D001612 2.2e-12 77.0 336 29.8
Nitab4.5_0003574g0140 Nicotiana tabacum HOM05D001640 ORTHO05D001612 2.2e-12 77.0 170 41.2
Carub.0002s0389 Capsella rubella HOM05D001640 ORTHO05D001612 2.9e-12 76.6 158 38.0
BcaB07g31270 Brassica carinata HOM05D001640 ORTHO05D001612 4.9e-12 75.9 160 38.1
Haze_06561 Corylus avellana HOM05D001640 ORTHO05D001612 4.9e-12 75.9 289 32.2
AL2G15050 Arabidopsis lyrata HOM05D001640 ORTHO05D001612 6.4e-12 75.5 161 40.4
Lj1A1212G53 Lonicera japonica HOM05D001640 ORTHO05D001612 8.3e-12 75.1 294 33.3
MBI02_g35911_MAGBIO Magnolia biondii HOM05D001640 ORTHO05D001612 8.3e-12 75.1 152 41.4
A09p16810 Brassica napus HOM05D001640 ORTHO05D001612 1.1e-11 74.7 159 36.5
Nn1g06744 Nelumbo nucifera HOM05D001640 ORTHO05D001612 1.1e-11 74.7 159 41.5
AT1G61260 Arabidopsis thaliana HOM05D001640 ORTHO05D001612 1.4e-11 74.3 166 39.2
Psat1g208000 Pisum sativum HOM05D001640 ORTHO05D001612 1.9e-11 73.9 242 31.0
PGSC0003DMG400019285 Solanum tuberosum HOM05D001640 ORTHO05D001612 2.4e-11 73.6 151 39.1
Cfa000364 Carpinus fangiana HOM05D001640 ORTHO05D001612 3.2e-11 73.2 299 31.8
HanXRQChr04g0125161 Helianthus annuus HOM05D001640 ORTHO05D001612 4.1e-11 72.8 322 30.1
Nitab4.5_0008144g0010 Nicotiana tabacum HOM05D001640 ORTHO05D001612 4.1e-11 72.8 166 41.6
QL05p081827 Quercus lobata HOM05D001640 ORTHO05D001612 4.1e-11 72.8 170 42.9
PGSC0003DMG400022414 Solanum tuberosum HOM05D001640 ORTHO05D001612 4.1e-11 72.8 330 31.2
BcaC04g22319 Brassica carinata HOM05D001640 ORTHO05D001612 5.4e-11 72.4 160 37.5
C09p20720 Brassica napus HOM05D001640 ORTHO05D001612 5.4e-11 72.4 160 37.5
BolC9t54969H Brassica oleracea HOM05D001640 ORTHO05D001612 5.4e-11 72.4 160 37.5
Cc02_g12550 Coffea canephora HOM05D001640 ORTHO05D001612 7.0e-11 72.0 163 39.3
Peaxi162Scf00588g00078 Petunia axillaris HOM05D001640 ORTHO05D001612 7.0e-11 72.0 171 38.6
Sopen07g031740 Solanum pennellii HOM05D001640 ORTHO05D001612 7.0e-11 72.0 151 39.1
Solyc07g063560.4 Solanum lycopersicum HOM05D001640 ORTHO05D001612 1.2e-10 71.2 151 39.1
EL10Ac4g08062 Beta vulgaris HOM05D001640 ORTHO05D001612 1.6e-10 70.9 298 32.2
Sed0018118 Sechium edule HOM05D001640 ORTHO05D001612 1.6e-10 70.9 311 29.3
VMungo0540G1672 Vigna mungo HOM05D001640 ORTHO05D001612 1.6e-10 70.9 267 30.0
Psat5g246520 Pisum sativum HOM05D001640 ORTHO05D001612 2.0e-10 70.5 323 31.3
ClCG10G006530 Citrullus lanatus HOM05D001640 ORTHO05D001612 3.5e-10 69.7 152 38.2
TAR627G0359 Trochodendron aralioides HOM05D001640 ORTHO05D001612 3.5e-10 69.7 157 40.1
Ciclev10008953m.g Citrus clementina HOM05D001640 ORTHO05D001612 7.8e-10 68.6 162 37.0
ATR0693G217 Amborella trichopoda HOM05D001640 ORTHO05D001612 1.0e-09 68.2 304 29.9
MSTRG.15925 Avicennia marina HOM05D001640 ORTHO05D001612 1.0e-09 68.2 159 38.4
Hund21272 Selenicereus undatus HOM05D001640 ORTHO05D001612 1.0e-09 68.2 150 38.7
Cpa.g.sc80.113 Carica papaya HOM05D001640 ORTHO05D001612 1.3e-09 67.8 313 29.4
ClCG03G005570 Citrullus lanatus HOM05D001640 ORTHO05D001612 1.3e-09 67.8 153 37.9
FAN16G1307 Fragaria x ananassa HOM05D001640 ORTHO05D001612 1.3e-09 67.8 153 39.2
SGA_v2.0_scaffold34G13716 Striga asiatica HOM05D001640 ORTHO05D001612 1.3e-09 67.8 132 36.4
MSTRG.15208 Avicennia marina HOM05D001640 ORTHO05D001612 1.7e-09 67.4 150 38.0
Sabra04G0021700 Salix brachista HOM05D001640 ORTHO05D001612 1.7e-09 67.4 289 29.8
SalBow8G5059 Salvia bowleyana HOM05D001640 ORTHO05D001612 2.3e-09 67.0 340 27.1
A01p30130 Brassica napus HOM05D001640 ORTHO05D001612 3.0e-09 66.6 259 29.7
Migut.M00878 Erythranthe guttata HOM05D001640 ORTHO05D001612 3.0e-09 66.6 153 37.9
Phvul.006G191200 Phaseolus vulgaris HOM05D001640 ORTHO05D001612 3.0e-09 66.6 265 29.4
Prupe.4G189800 Prunus persica HOM05D001640 ORTHO05D001612 3.0e-09 66.6 154 39.0
TWI39G0097 Tripterygium wilfordii HOM05D001640 ORTHO05D001612 3.0e-09 66.6 299 29.8
Ca_01806_v3 Cicer arietinum L. HOM05D001640 ORTHO05D001612 3.9e-09 66.2 158 39.9
CsaV3_3G005980 Cucumis sativus L. HOM05D001640 ORTHO05D001612 3.9e-09 66.2 153 37.9
FvH4_3g20920 Fragaria vesca HOM05D001640 ORTHO05D001612 3.9e-09 66.2 154 39.6
FAN11G1051 Fragaria x ananassa HOM05D001640 ORTHO05D001612 3.9e-09 66.2 154 39.6
Potri.011G044000 Populus trichocarpa HOM05D001640 ORTHO05D001612 3.9e-09 66.2 345 29.6
THA.LOC104809550 Tarenaya hassleriana HOM05D001640 ORTHO05D001612 3.9e-09 66.2 144 36.1
Aa31LG2G9360 Aethionema arabicum HOM05D001640 ORTHO05D001612 5.0e-09 65.9 169 36.1
arahy.Tifrunner.gnm1.ann1.C6SH89 Arachis hypogaea HOM05D001640 ORTHO05D001612 5.0e-09 65.9 289 32.5
Nitab4.5_0007109g0010 Nicotiana tabacum HOM05D001640 ORTHO05D001612 5.0e-09 65.9 307 29.3
Prupe.4G035700 Prunus persica HOM05D001640 ORTHO05D001612 5.0e-09 65.9 150 40.0
MSTRG.7298 Avicennia marina HOM05D001640 ORTHO05D001612 8.6e-09 65.1 306 29.1
Nn2g11887 Nelumbo nucifera HOM05D001640 ORTHO05D001612 8.6e-09 65.1 72 54.2
Nn6g35669 Nelumbo nucifera HOM05D001640 ORTHO05D001612 8.6e-09 65.1 72 54.2
Nn6g35736 Nelumbo nucifera HOM05D001640 ORTHO05D001612 8.6e-09 65.1 72 54.2
MELO3C002560.2 Cucumis melo HOM05D001640 ORTHO05D001612 1.1e-08 64.7 152 36.8
Lalb_Chr15g0090071 Lupinus albus HOM05D001640 ORTHO05D001612 1.1e-08 64.7 214 31.3
Nitab4.5_0008686g0010 Nicotiana tabacum HOM05D001640 ORTHO05D001612 1.1e-08 64.7 151 40.4
QL08p018071 Quercus lobata HOM05D001640 ORTHO05D001612 1.1e-08 64.7 294 28.9
TPR.G32866 Trifolium pratense HOM05D001640 ORTHO05D001612 1.1e-08 64.7 163 38.7
FAN16G3443 Fragaria x ananassa HOM05D001640 ORTHO05D001612 1.5e-08 64.3 175 36.6
FAN25G1770 Fragaria x ananassa HOM05D001640 ORTHO05D001612 1.9e-08 63.9 177 36.7
TWI38G2165 Tripterygium wilfordii HOM05D001640 ORTHO05D001612 1.9e-08 63.9 232 29.3
PGR042G0663 Punica granatum HOM05D001640 ORTHO05D001612 2.5e-08 63.5 326 28.8
Ah.06g183580 Amaranthus hybridus HOM05D001640 ORTHO05D001612 3.3e-08 63.2 334 29.9
arahy.Tifrunner.gnm1.ann1.CWT1SW Arachis hypogaea HOM05D001640 ORTHO05D001612 3.3e-08 63.2 289 30.4
Potri.004G035700 Populus trichocarpa HOM05D001640 ORTHO05D001612 3.3e-08 63.2 149 39.6
arahy.Tifrunner.gnm1.ann1.A0V2WM Arachis hypogaea HOM05D001640 ORTHO05D001612 4.3e-08 62.8 264 29.9
CANSAT11G1358 Cannabis sativa HOM05D001640 ORTHO05D001612 4.3e-08 62.8 156 36.5
MELO3C016552.2 Cucumis melo HOM05D001640 ORTHO05D001612 4.3e-08 62.8 154 36.4
Glyma.13G245600 Glycine max HOM05D001640 ORTHO05D001612 4.3e-08 62.8 269 28.6
SEGI_20526 Sequoiadendron giganteum HOM05D001640 ORTHO05D001612 4.3e-08 62.8 153 34.0
THA.LOC104813396 Tarenaya hassleriana HOM05D001640 ORTHO05D001612 4.3e-08 62.8 158 37.3
TAR371G1285 Trochodendron aralioides HOM05D001640 ORTHO05D001612 4.3e-08 62.8 268 29.1
arahy.Tifrunner.gnm1.ann1.R6F5YK Arachis hypogaea HOM05D001640 ORTHO05D001612 5.6e-08 62.4 264 29.9
FAN21G3887 Fragaria x ananassa HOM05D001640 ORTHO05D001612 5.6e-08 62.4 154 39.0
Lj3g0003756 Lotus japonicus HOM05D001640 ORTHO05D001612 5.6e-08 62.4 154 37.7
Nn3g16286 Nelumbo nucifera HOM05D001640 ORTHO05D001612 5.6e-08 62.4 101 43.6
Nn7g36083 Nelumbo nucifera HOM05D001640 ORTHO05D001612 5.6e-08 62.4 142 38.0
Sed0026447 Sechium edule HOM05D001640 ORTHO05D001612 5.6e-08 62.4 297 26.9
Aqoxy1G02755 Aquilegia oxysepala HOM05D001640 ORTHO05D001612 7.3e-08 62.0 162 38.9
CANSAT35G1846 Cannabis sativa HOM05D001640 ORTHO05D001612 7.3e-08 62.0 351 25.9
MD03G1219300 Malus domestica HOM05D001640 ORTHO05D001612 7.3e-08 62.0 156 37.2
RcHm_v2.0_Chr5g0006611 Rosa chinensis HOM05D001640 ORTHO05D001612 7.3e-08 62.0 164 37.2
SGA_v2.0_scaffold73G24316 Striga asiatica HOM05D001640 ORTHO05D001612 9.5e-08 61.6 150 38.0
BcaB07g31271 Brassica carinata HOM05D001640 ORTHO05D001612 1.2e-07 61.2 92 41.3
FAN11G1299 Fragaria x ananassa HOM05D001640 ORTHO05D001612 1.2e-07 61.2 170 35.3
MD05G1324300 Malus domestica HOM05D001640 ORTHO05D001612 1.2e-07 61.2 161 35.4
Medtr2g080980 Medicago truncatula HOM05D001640 ORTHO05D001612 1.2e-07 61.2 203 33.0
Dinv08340 Davidia involucrata HOM05D001640 ORTHO05D001612 2.1e-07 60.5 154 37.0
Peaxi162Scf00137g01111 Petunia axillaris HOM05D001640 ORTHO05D001612 2.1e-07 60.5 289 29.8
Sabra04G0021500 Salix brachista HOM05D001640 ORTHO05D001612 2.1e-07 60.5 247 31.2
SGA_v2.0_scaffold7G03962 Striga asiatica HOM05D001640 ORTHO05D001612 2.1e-07 60.5 149 35.6
TAR626G0635 Trochodendron aralioides HOM05D001640 ORTHO05D001612 2.1e-07 60.5 319 28.8
EL10Ac8g20619 Beta vulgaris HOM05D001640 ORTHO05D001612 2.8e-07 60.1 155 36.8
BolC1t03784H Brassica oleracea HOM05D001640 ORTHO05D001612 2.8e-07 60.1 151 36.4
PGR083G2642 Punica granatum HOM05D001640 ORTHO05D001612 2.8e-07 60.1 155 38.1
RcHm_v2.0_Chr5g0035351 Rosa chinensis HOM05D001640 ORTHO05D001612 2.8e-07 60.1 155 40.0
Ah.04g165430 Amaranthus hybridus HOM05D001640 ORTHO05D001612 3.6e-07 59.7 320 26.9
Haze_09527 Corylus avellana HOM05D001640 ORTHO05D001612 3.6e-07 59.7 153 40.5
Eucgr.E03446 Eucalyptus grandis HOM05D001640 ORTHO05D001612 3.6e-07 59.7 155 36.1
Potri.001G406600 Populus trichocarpa HOM05D001640 ORTHO05D001612 3.6e-07 59.7 278 28.8
Sc16g0006790 Simmondsia chinensis HOM05D001640 ORTHO05D001612 3.6e-07 59.7 313 29.1
CSS0030521 Camellia sinensis var. sinensis HOM05D001640 ORTHO05D001612 4.7e-07 59.3 166 36.1
Ca_00268_v3 Cicer arietinum L. HOM05D001640 ORTHO05D001612 4.7e-07 59.3 249 30.1
CsaV3_1G011830 Cucumis sativus L. HOM05D001640 ORTHO05D001612 4.7e-07 59.3 152 34.9
DCAR_008703 Daucus carota HOM05D001640 ORTHO05D001612 4.7e-07 59.3 154 38.3
Oeu043696.1 Olea europaea HOM05D001640 ORTHO05D001612 4.7e-07 59.3 160 35.0
CDE02G2367 Ceratophyllum demersum HOM05D001640 ORTHO05D001612 6.2e-07 58.9 292 28.4
Sopen03g002630 Solanum pennellii HOM05D001640 ORTHO05D001612 6.2e-07 58.9 153 32.0
TPR.G36767 Trifolium pratense HOM05D001640 ORTHO05D001612 6.2e-07 58.9 159 34.0
GSVIVG01006712001 Vitis vinifera HOM05D001640 ORTHO05D001612 6.2e-07 58.9 265 30.2
Peaxi162Scf01216g00045 Petunia axillaris HOM05D001640 ORTHO05D001612 8.0e-07 58.5 155 35.5
CiPaw.11G176400 Carya illinoinensis HOM05D001640 ORTHO05D001612 1.1e-06 58.2 150 38.7
Lj6g0007106 Lotus japonicus HOM05D001640 ORTHO05D001612 1.1e-06 58.2 280 30.0
Oeu038226.1 Olea europaea HOM05D001640 ORTHO05D001612 1.1e-06 58.2 87 44.8
Cfa020506 Carpinus fangiana HOM05D001640 ORTHO05D001612 1.4e-06 57.8 157 36.3
FvH4_3g04160 Fragaria vesca HOM05D001640 ORTHO05D001612 1.4e-06 57.8 171 35.1
Phvul.005G086300 Phaseolus vulgaris HOM05D001640 ORTHO05D001612 1.4e-06 57.8 151 38.4
Gohir.A01G068400 Gossypium hirsutum HOM05D001640 ORTHO05D001612 2.3e-06 57.0 283 30.0
Solyc03g006620.3 Solanum lycopersicum HOM05D001640 ORTHO05D001612 2.3e-06 57.0 153 31.4
HPP92_012352 Vanilla planifolia HOM05D001640 ORTHO05D001612 2.3e-06 57.0 157 35.7
VMungo1080G1259 Vigna mungo HOM05D001640 ORTHO05D001612 2.3e-06 57.0 150 38.7
FAN21G3900 Fragaria x ananassa HOM05D001640 ORTHO05D001612 3.1e-06 56.6 173 35.3
MD10G1302100 Malus domestica HOM05D001640 ORTHO05D001612 3.1e-06 56.6 171 32.7
Nitab4.5_0000297g0100 Nicotiana tabacum HOM05D001640 ORTHO05D001612 4.0e-06 56.2 142 34.5
Oeu019363.1 Olea europaea HOM05D001640 ORTHO05D001612 4.0e-06 56.2 173 37.0
Zm00001eb106950 Zea mays HOM05D001640 ORTHO05D001612 4.0e-06 56.2 156 35.9
Ciclev10021576m.g Citrus clementina HOM05D001640 ORTHO05D001612 5.2e-06 55.8 270 27.0
Manes.03G067600 Manihot esculenta HOM05D001640 ORTHO05D001612 5.2e-06 55.8 282 28.4
Rhsim06G0193000 Rhododendron simsii HOM05D001640 ORTHO05D001612 5.2e-06 55.8 320 26.6
PGSC0003DMG400005036 Solanum tuberosum HOM05D001640 ORTHO05D001612 5.2e-06 55.8 155 31.6
vmacro11814 Vaccinium macrocarpon HOM05D001640 ORTHO05D001612 5.2e-06 55.8 340 25.9
AUR62029314 Chenopodium quinoa HOM05D001640 ORTHO05D001612 6.8e-06 55.5 313 27.8
Potri.011G126900 Populus trichocarpa HOM05D001640 ORTHO05D001612 6.8e-06 55.5 150 37.3
Lalb_Chr01g0017031 Lupinus albus HOM05D001640 ORTHO05D001612 8.9e-06 55.1 150 36.0
Medtr2g012320 Medicago truncatula HOM05D001640 ORTHO05D001612 8.9e-06 55.1 155 32.9
Nitab4.5_0003465g0080 Nicotiana tabacum HOM05D001640 ORTHO05D001612 8.9e-06 55.1 276 30.1
Zm00001eb324310 Zea mays HOM05D001640 ORTHO05D001612 8.9e-06 55.1 181 35.9


User provided reference genes

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