Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 6.7e-274 946.8 507 100.0
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 4.4e-233 811.2 509 87.4
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 3.7e-232 808.1 511 86.7
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 2.6e-217 758.8 508 82.1
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 4.2e-183 645.2 511 71.6
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 9.4e-183 644.0 507 70.4
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 1.6e-182 643.3 508 71.5
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 1.3e-179 633.6 509 69.0
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 2.2e-179 632.9 491 71.1
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 2.2e-179 632.9 491 71.1
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 6.3e-179 631.3 508 69.3
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 8.2e-179 630.9 510 69.6
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 2.0e-177 626.3 507 70.4
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 5.9e-177 624.8 510 69.0
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 1.3e-176 623.6 508 69.1
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 5.0e-176 621.7 508 69.5
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.1e-175 620.5 495 70.3
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 1.4e-175 620.2 506 68.6
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 4.2e-175 618.6 507 69.0
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 5.5e-175 618.2 509 68.4
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 9.4e-175 617.5 508 68.7
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 1.6e-174 616.7 508 68.3
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.6e-174 616.7 508 67.5
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 7.9e-174 614.4 511 67.7
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 2.3e-173 612.8 500 68.8
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 3.9e-173 612.1 509 68.2
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.5e-172 610.1 509 67.6
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 2.6e-172 609.4 506 67.2
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 2.6e-172 609.4 507 68.2
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.3e-172 609.0 527 66.8
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 5.7e-172 608.2 511 67.1
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 2.2e-171 606.3 510 67.5
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 2.8e-171 605.9 498 67.7
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 3.7e-171 605.5 488 70.9
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 4.8e-171 605.1 496 68.1
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 4.8e-171 605.1 509 67.0
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 1.4e-170 603.6 507 67.3
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.8e-170 603.2 516 67.2
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.1e-170 602.4 537 65.4
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 5.3e-170 601.7 510 67.1
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 7.0e-170 601.3 496 67.7
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 7.0e-170 601.3 495 68.9
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 9.1e-170 600.9 508 67.3
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 9.1e-170 600.9 509 66.8
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 1.2e-169 600.5 511 66.1
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 1.2e-169 600.5 492 68.5
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 2.6e-169 599.4 492 68.7
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 3.5e-169 599.0 510 67.8
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 5.9e-169 598.2 499 68.1
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 5.9e-169 598.2 484 69.0
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 7.7e-169 597.8 496 67.5
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 1.0e-168 597.4 508 67.5
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 1.3e-168 597.0 508 67.1
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.7e-168 596.7 509 65.8
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 1.7e-168 596.7 492 67.9
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 8.5e-168 594.3 503 67.0
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.9e-167 593.2 509 65.4
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 1.9e-167 593.2 478 70.5
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 2.5e-167 592.8 518 64.9
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 3.2e-167 592.4 494 68.0
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 4.2e-167 592.0 490 68.6
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 9.4e-167 590.9 512 65.2
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 2.1e-166 589.7 512 66.0
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 2.1e-166 589.7 512 65.8
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 2.1e-166 589.7 512 65.4
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 6.1e-166 588.2 513 66.1
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 1.4e-165 587.0 512 65.6
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.4e-165 587.0 508 66.5
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 6.7e-165 584.7 509 66.2
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 8.8e-165 584.3 512 65.0
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 8.8e-165 584.3 510 66.3
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 1.1e-164 583.9 529 63.5
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 2.6e-164 582.8 507 65.7
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 5.7e-164 581.6 509 65.8
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 7.4e-164 581.3 492 67.5
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 1.3e-163 580.5 511 64.8
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 8.2e-163 577.8 519 64.9
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 3.1e-162 575.9 514 65.0
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 5.3e-162 575.1 515 64.5
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.0e-160 570.9 506 65.0
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.7e-160 570.1 506 63.8
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 2.2e-160 569.7 505 64.8
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 2.5e-159 566.2 425 73.6
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 9.4e-159 564.3 496 64.9
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 1.2e-158 563.9 509 63.3
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.6e-158 563.5 475 67.2
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 2.1e-158 563.1 509 63.1
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 4.7e-158 562.0 494 64.0
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 4.7e-158 562.0 490 65.7
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 4.0e-157 558.9 511 63.2
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 4.0e-157 558.9 493 64.1
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 1.5e-156 557.0 501 64.3
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 2.6e-156 556.2 492 65.0
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 5.7e-156 555.1 488 64.3
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 1.3e-155 553.9 500 64.2
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 1.3e-155 553.9 494 63.6
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 2.8e-155 552.7 475 65.9
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 2.0e-153 546.6 511 64.0
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 2.2e-152 543.1 508 61.2
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 1.0e-149 534.3 444 67.6
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.2e-148 530.8 529 61.6
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 6.8e-141 505.0 497 59.8
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 6.3e-139 498.4 385 71.4
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 8.3e-139 498.0 534 57.9
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 5.9e-137 491.9 449 63.7
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 1.1e-135 487.6 488 58.6
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 5.2e-133 478.8 358 72.6
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 1.7e-131 473.8 491 55.8
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 1.2e-124 451.1 471 59.2
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 2.1e-121 440.3 449 56.6
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 5.1e-120 435.6 451 60.1
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 4.7e-118 429.1 510 53.5
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 3.9e-112 409.5 395 60.3
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 6.6e-112 408.7 446 53.1
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.1e-110 403.7 398 61.8
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 7.8e-105 385.2 503 51.9
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 4.0e-101 372.9 383 61.1
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 3.9e-96 356.3 424 54.0
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 6.6e-96 355.5 406 55.2
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 1.3e-86 324.7 211 78.2
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 6.5e-83 312.4 426 48.1
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 3.3e-79 300.1 324 52.2
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 6.3e-78 295.8 454 44.5
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 1.8e-77 294.3 439 43.7
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 9.0e-77 292.0 256 67.2
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.9e-71 274.2 224 68.8
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.6e-70 271.2 221 68.3
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 5.9e-68 262.7 451 39.9
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 6.1e-57 226.1 202 64.9
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 3.3e-55 220.3 366 42.3
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 5.9e-52 209.5 405 37.5
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.3e-51 208.4 285 48.8
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 9.1e-45 185.7 164 61.6
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 5.9e-44 183.0 412 35.2
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 1.4e-37 161.8 289 41.9
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.0e-35 155.6 110 72.7
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 8.5e-35 152.5 134 63.4
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 1.8e-32 144.8 96 77.1
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 3.0e-32 144.1 111 63.1
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 2.7e-28 131.0 92 75.0
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 4.1e-21 107.1 147 46.9
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 7.8e-20 102.8 122 50.0
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 3.3e-18 97.4 185 38.9
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.8e-17 94.4 93 54.8
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 8.6e-11 72.8 71 59.2
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 3.6e-09 67.4 50 74.0
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.0e-07 61.6 59 54.2
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.0e-07 61.6 59 54.2
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 4.9e-06 57.0 59 57.6


User provided reference genes

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