Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0540811 Helianthus annuus HOM05D005682 ORTHO05D007050 0.0e+00 2052.7 1031 100.0
ECA246G2025 Erigeron canadensis HOM05D005682 ORTHO05D007050 0.0e+00 1407.9 1071 68.6
Lsat_1_v5_gn_3_33580 Lactuca sativa HOM05D005682 ORTHO05D007050 0.0e+00 1347.4 1062 68.8
GSVIVG01010197001 Vitis vinifera HOM05D005682 ORTHO05D007050 9.2e-278 960.7 1094 48.5
Lj6A721G56 Lonicera japonica HOM05D005682 ORTHO05D007050 5.6e-267 924.9 1154 46.4
Actinidia04079 Actinidia chinensis HOM05D005682 ORTHO05D007050 1.5e-264 916.8 1116 46.8
DCAR_002567 Daucus carota HOM05D005682 ORTHO05D007050 6.0e-261 904.8 1087 46.2
CiPaw.05G167300 Carya illinoinensis HOM05D005682 ORTHO05D007050 1.7e-252 876.7 1109 45.7
Prupe.1G345800 Prunus persica HOM05D005682 ORTHO05D007050 1.7e-252 876.7 1104 45.9
RcHm_v2.0_Chr4g0446491 Rosa chinensis HOM05D005682 ORTHO05D007050 2.3e-252 876.3 1114 45.6
Potri.007G070400 Populus trichocarpa HOM05D005682 ORTHO05D007050 5.1e-252 875.2 1085 45.3
Rhsim09G0074000 Rhododendron simsii HOM05D005682 ORTHO05D007050 4.7e-250 868.6 1077 46.4
Haze_11722 Corylus avellana HOM05D005682 ORTHO05D007050 8.1e-250 867.8 1082 45.8
TAR622G0093 Trochodendron aralioides HOM05D005682 ORTHO05D007050 3.4e-248 862.4 1067 44.9
FvH4_4g36771 Fragaria vesca HOM05D005682 ORTHO05D007050 4.9e-247 858.6 1110 44.1
CANSAT64G0530 Cannabis sativa HOM05D005682 ORTHO05D007050 3.2e-246 855.9 1095 44.0
FAN17G1521 Fragaria x ananassa HOM05D005682 ORTHO05D007050 8.7e-244 847.8 1095 43.3
Sabra07G0059000 Salix brachista HOM05D005682 ORTHO05D007050 3.3e-243 845.9 1079 44.6
Duzib132G1218 Durio zibethinus HOM05D005682 ORTHO05D007050 5.6e-243 845.1 1105 43.6
MD13G1007100 Malus domestica HOM05D005682 ORTHO05D007050 9.6e-243 844.3 1105 43.4
Duzib052G0545 Durio zibethinus HOM05D005682 ORTHO05D007050 1.8e-241 840.1 1105 43.9
FAN07G1253 Fragaria x ananassa HOM05D005682 ORTHO05D007050 7.6e-240 834.7 1094 43.6
PSO063G1542 Papaver somniferum HOM05D005682 ORTHO05D007050 4.9e-239 832.0 1108 42.7
Phvul.011G031200 Phaseolus vulgaris HOM05D005682 ORTHO05D007050 1.1e-238 830.9 1103 42.9
TWI74G0147 Tripterygium wilfordii HOM05D005682 ORTHO05D007050 2.4e-238 829.7 1096 43.3
Oeu033538.1 Olea europaea HOM05D005682 ORTHO05D007050 7.1e-238 828.2 1102 43.6
Glyma.11G102200 Glycine max HOM05D005682 ORTHO05D007050 1.8e-236 823.5 1106 42.9
VMungo1127G0377 Vigna mungo HOM05D005682 ORTHO05D007050 1.1e-233 814.3 1105 42.4
Nn4g24940 Nelumbo nucifera HOM05D005682 ORTHO05D007050 2.4e-233 813.1 1096 43.4
Gorai.013G070900 Gossypium raimondii HOM05D005682 ORTHO05D007050 9.9e-232 807.7 1113 42.9
Gohir.A13G059600 Gossypium hirsutum HOM05D005682 ORTHO05D007050 4.9e-231 805.4 1108 42.8
Gohir.D13G062400 Gossypium hirsutum HOM05D005682 ORTHO05D007050 3.5e-229 799.3 1113 42.6
Lalb_Chr01g0001491 Lupinus albus HOM05D005682 ORTHO05D007050 7.9e-229 798.1 1098 41.9
Sed0007950 Sechium edule HOM05D005682 ORTHO05D007050 2.5e-227 793.1 1099 42.1
MELO3C023602.2 Cucumis melo HOM05D005682 ORTHO05D007050 1.3e-226 790.8 1089 41.8
ClCG09G004600 Citrullus lanatus HOM05D005682 ORTHO05D007050 8.2e-226 788.1 1101 42.1
MSTRG.433 Avicennia marina HOM05D005682 ORTHO05D007050 4.0e-225 785.8 1106 40.8
Migut.L00859 Erythranthe guttata HOM05D005682 ORTHO05D007050 9.0e-225 784.6 1100 41.5
Aqoxy2G03805 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 4.5e-224 782.3 1093 40.7
Lj3g0015709 Lotus japonicus HOM05D005682 ORTHO05D007050 7.1e-222 775.0 1106 41.0
Eucgr.J00855 Eucalyptus grandis HOM05D005682 ORTHO05D007050 1.6e-221 773.9 1054 41.5
PSO782G3049 Papaver somniferum HOM05D005682 ORTHO05D007050 2.5e-219 766.5 1054 42.4
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 1.3e-218 764.2 1073 42.6
vmacro10900 Vaccinium macrocarpon HOM05D005682 ORTHO05D007050 2.8e-218 763.1 1150 41.2
Medtr4g074610 Medicago truncatula HOM05D005682 ORTHO05D007050 9.0e-217 758.1 1116 39.5
TPR.G32358 Trifolium pratense HOM05D005682 ORTHO05D007050 6.7e-212 741.9 1080 40.4
QL03p043857 Quercus lobata HOM05D005682 ORTHO05D007050 3.3e-211 739.6 1432 35.5
SalBow2G1379 Salvia bowleyana HOM05D005682 ORTHO05D007050 5.7e-211 738.8 1191 38.6
PGR044G2237 Punica granatum HOM05D005682 ORTHO05D007050 4.1e-209 732.6 1109 39.4
THA.LOC104826522 Tarenaya hassleriana HOM05D005682 ORTHO05D007050 1.1e-206 724.5 1072 39.8
Sc06g0007890 Simmondsia chinensis HOM05D005682 ORTHO05D007050 9.4e-206 721.5 1096 38.9
ATR0618G435 Amborella trichopoda HOM05D005682 ORTHO05D000625 2.6e-203 713.4 1141 38.6
Ciclev10030666m.g Citrus clementina HOM05D005682 ORTHO05D007050 8.2e-202 708.4 893 44.7
Hund13152 Selenicereus undatus HOM05D005682 ORTHO05D007050 9.1e-201 704.9 1042 41.9
Ca_03025_v3 Cicer arietinum L. HOM05D005682 ORTHO05D007050 2.9e-199 699.9 1043 39.1
CsaV3_7G030540 Cucumis sativus L. HOM05D005682 ORTHO05D007050 2.9e-199 699.9 1012 40.9
Ah.14g085910 Amaranthus hybridus HOM05D005682 ORTHO05D007050 1.0e-196 691.4 1099 38.4
AL3G33230 Arabidopsis lyrata HOM05D005682 ORTHO05D007050 3.9e-196 689.5 1089 39.0
Thecc.02G161600 Theobroma cacao HOM05D005682 ORTHO05D007050 5.2e-196 689.1 898 43.8
BraA05t21829Z Brassica rapa HOM05D005682 ORTHO05D007050 3.3e-195 686.4 1098 38.2
BolC5t33225H Brassica oleracea HOM05D005682 ORTHO05D007050 3.5e-192 676.4 1100 38.1
Carub.0003s1966 Capsella rubella HOM05D005682 ORTHO05D007050 4.5e-192 676.0 1098 38.3
BcaB06g26047 Brassica carinata HOM05D005682 ORTHO05D007050 5.9e-192 675.6 1104 38.1
AT3G19780 Arabidopsis thaliana HOM05D005682 ORTHO05D007050 1.0e-188 664.8 1089 38.0
EL10Ac9g20684 Beta vulgaris HOM05D005682 ORTHO05D007050 1.8e-188 664.1 1042 39.3
Thhalv10019965m.g Eutrema salsugineum HOM05D005682 ORTHO05D007050 8.8e-188 661.8 1085 37.4
Manes.11G108701 Manihot esculenta HOM05D005682 ORTHO05D007050 1.3e-186 657.9 898 43.0
Sopen02g009170 Solanum pennellii HOM05D005682 ORTHO05D007050 1.7e-186 657.5 971 41.2
BcaC05g28416 Brassica carinata HOM05D005682 ORTHO05D007050 4.8e-186 656.0 1097 37.7
Peaxi162Scf00363g00730 Petunia axillaris HOM05D005682 ORTHO05D007050 4.8e-186 656.0 928 41.1
AUR62018178 Chenopodium quinoa HOM05D005682 ORTHO05D007050 1.4e-185 654.4 1203 35.8
Sp3g17800 Schrenkiella parvula HOM05D005682 ORTHO05D007050 1.3e-183 647.9 1091 37.6
Cfa008712 Carpinus fangiana HOM05D005682 ORTHO05D007050 4.8e-178 629.4 841 44.7
arahy.Tifrunner.gnm1.ann1.3I7IYH Arachis hypogaea HOM05D005682 ORTHO05D007050 7.7e-176 622.1 927 40.7
Aa31LG8G6560 Aethionema arabicum HOM05D005682 ORTHO05D007050 1.7e-175 620.9 1079 36.5
AUR62038663 Chenopodium quinoa HOM05D005682 ORTHO05D007050 4.4e-171 606.3 1072 37.1
Zm00001eb221340 Zea mays HOM05D005682 ORTHO05D007050 2.1e-165 587.4 1217 32.6
arahy.Tifrunner.gnm1.ann1.H4B4B0 Arachis hypogaea HOM05D005682 ORTHO05D007050 3.5e-160 570.1 776 43.4
Nitab4.5_0000139g0140 Nicotiana tabacum HOM05D005682 ORTHO05D007050 8.6e-151 538.9 803 41.6
C05p45010 Brassica napus HOM05D005682 ORTHO05D007050 6.2e-149 532.7 877 37.5
A05p29780 Brassica napus HOM05D005682 ORTHO05D007050 4.4e-147 526.6 874 37.1
Dinv11710 Davidia involucrata HOM05D005682 ORTHO05D007050 7.6e-147 525.8 490 53.3
Psat7g173480 Pisum sativum HOM05D005682 ORTHO05D007050 1.6e-141 508.1 828 38.6
CAN.G157.16 Capsicum annuum HOM05D005682 ORTHO05D007050 1.1e-140 505.4 846 37.7
Cc11_g00090 Coffea canephora HOM05D005682 ORTHO05D007050 1.5e-139 501.5 776 41.4
unitig_699.g19973 Utricularia gibba HOM05D005682 ORTHO05D007050 1.9e-134 484.6 1029 33.6
Hma1.2p1_0499F.1_g166820 Hydrangea macrophylla HOM05D005682 ORTHO05D007050 7.9e-128 462.6 478 49.2
SEGI_38899 Sequoiadendron giganteum HOM05D005682 ORTHO05D007050 1.3e-127 461.8 1258 28.9
Dinv11711 Davidia involucrata HOM05D005682 ORTHO05D007050 6.9e-124 449.5 491 52.1
Solyc02g055460.3 Solanum lycopersicum HOM05D005682 ORTHO05D007050 1.1e-113 415.6 682 39.9
CARHR095300 Cardamine hirsuta HOM05D005682 ORTHO05D007050 3.2e-113 414.1 747 36.1
Atru.chr11.1182 Acer truncatum HOM05D005682 ORTHO05D007050 4.2e-113 413.7 610 42.1
COL.COLO4_08120 Corchorus olitorius HOM05D005682 ORTHO05D007050 3.9e-111 407.1 726 37.7
HPP92_008567 Vanilla planifolia HOM05D005682 ORTHO05D007050 7.9e-104 382.9 555 41.4
CDE04G1407 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 1.2e-99 369.0 768 32.9
Os10g0485100 Oryza sativa ssp. japonica HOM05D005682 ORTHO05D007050 4.5e-99 367.1 590 36.6
HPP92_008562 Vanilla planifolia HOM05D005682 ORTHO05D007050 2.0e-91 341.7 758 33.2
BraA05t21816Z Brassica rapa HOM05D005682 ORTHO05D007050 1.1e-86 325.9 607 35.6
AagrBONN_evm.TU.Sc2ySwM_340.174 Anthoceros agrestis HOM05D005682 ORTHO05D007050 4.1e-84 317.4 1147 25.4
BcaC05g28417 Brassica carinata HOM05D005682 ORTHO05D007050 1.0e-82 312.8 466 40.6
SHI13893 Sapria himalayana HOM05D005682 ORTHO05D007050 9.4e-73 279.6 466 37.8
Nitab4.5_0028170g0010 Nicotiana tabacum HOM05D005682 ORTHO05D007050 3.4e-70 271.2 504 37.3
CSS0028316 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 1.7e-66 258.8 282 46.8
BcaC05g28407 Brassica carinata HOM05D005682 ORTHO05D007050 6.1e-64 250.4 387 37.5
CSS0031646 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 4.4e-62 244.2 341 44.9
CAN.G157.17 Capsicum annuum HOM05D005682 ORTHO05D007050 6.3e-61 240.4 253 51.8
CARHR095290 Cardamine hirsuta HOM05D005682 ORTHO05D007050 5.9e-59 233.8 343 40.5
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 7.5e-54 216.9 953 23.8
CDE04G1313 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 9.8e-54 216.5 285 40.4
Cc11_g04390 Coffea canephora HOM05D005682 ORTHO05D007050 7.8e-51 206.8 262 45.8
Cc11_g00100 Coffea canephora HOM05D005682 ORTHO05D007050 1.7e-50 205.7 165 57.0
Nitab4.5_0002392g0030 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.9e-49 202.2 191 51.8
Pp3c7_6630 Physcomitrium patens HOM05D005682 ORTHO05D007050 1.2e-48 199.5 1043 24.6
COL.COLO4_08119 Corchorus olitorius HOM05D005682 ORTHO05D007050 2.3e-47 195.3 184 52.7
SHI13894 Sapria himalayana HOM05D005682 ORTHO05D007050 6.8e-47 193.7 306 37.9
Sopen02g009200 Solanum pennellii HOM05D005682 ORTHO05D007050 2.0e-46 192.2 204 51.5
Solyc02g055470.2 Solanum lycopersicum HOM05D005682 ORTHO05D007050 3.4e-46 191.4 188 53.7
CSS0001307 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 7.3e-41 173.7 221 46.6
A05p29790 Brassica napus HOM05D005682 ORTHO05D007050 1.1e-39 169.9 212 45.8
Nitab4.5_0002392g0020 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.5e-38 166.0 199 46.2
SHI13892 Sapria himalayana HOM05D005682 ORTHO05D007050 1.1e-36 159.8 159 47.8
Nitab4.5_0000139g0150 Nicotiana tabacum HOM05D005682 ORTHO05D007050 2.3e-31 142.1 136 54.4
CSS0026201 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 6.2e-24 117.5 130 47.7
Peaxi162Scf00363g00073 Petunia axillaris HOM05D005682 ORTHO05D007050 4.0e-23 114.8 117 53.8
BcaC05g28408 Brassica carinata HOM05D005682 ORTHO05D007050 2.5e-17 95.5 150 36.7
C05p44920 Brassica napus HOM05D005682 ORTHO05D007050 7.3e-17 94.0 193 30.6
Psat4g043640 Pisum sativum HOM05D005682 ORTHO05D007050 3.1e-15 88.6 114 42.1
Aqoxy2G03797 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 6.9e-15 87.4 106 46.2
HPP92_008566 Vanilla planifolia HOM05D005682 ORTHO05D007050 3.5e-11 75.1 176 33.0
CBR_g66815 Chara braunii HOM05D005682 ORTHO05D007050 4.3e-09 68.2 138 26.1
FvH4_4g15932 Fragaria vesca HOM05D005682 ORTHO05D007050 3.6e-08 65.1 149 32.2
arahy.Tifrunner.gnm1.ann1.NGDJ3K Arachis hypogaea HOM05D002497 ORTHO05D002697 4.8e-08 64.7 161 29.8
Cc07_g03780 Coffea canephora HOM05D002497 ORTHO05D002697 4.8e-08 64.7 158 29.7
SEGI_17937 Sequoiadendron giganteum HOM05D002497 ORTHO05D002697 4.8e-08 64.7 148 32.4
Medtr7g011850 Medicago truncatula HOM05D002497 ORTHO05D002697 6.2e-08 64.3 162 32.1
Lsat_1_v5_gn_4_136001 Lactuca sativa HOM05D005682 ORTHO05D007050 2.4e-07 62.4 45 62.2
Lalb_Chr10g0093261 Lupinus albus HOM05D002497 ORTHO05D002697 4.0e-07 61.6 161 28.6
MBI19_g13737_MAGBIO Magnolia biondii HOM05D002497 ORTHO05D002697 4.0e-07 61.6 162 29.6
CiPaw.04G013700 Carya illinoinensis HOM05D002497 ORTHO05D002697 5.3e-07 61.2 161 29.2
Solyc02g067050.3 Solanum lycopersicum HOM05D002497 ORTHO05D002697 5.3e-07 61.2 157 31.2
Hma1.2p1_0423F.1_g150190 Hydrangea macrophylla HOM05D002497 ORTHO05D002697 6.9e-07 60.8 162 29.0
ATR0598G145 Amborella trichopoda HOM05D002497 ORTHO05D002697 9.0e-07 60.5 154 29.2
Nitab4.5_0000212g0150 Nicotiana tabacum HOM05D002497 ORTHO05D002697 9.0e-07 60.5 160 30.0
Dinv33800 Davidia involucrata HOM05D002497 ORTHO05D002697 1.2e-06 60.1 162 29.0
PSO478G4048 Papaver somniferum HOM05D002497 ORTHO05D002697 1.2e-06 60.1 181 29.8
Peaxi162Scf00629g00316 Petunia axillaris HOM05D002497 ORTHO05D002697 1.2e-06 60.1 158 30.4
ECA232G3320 Erigeron canadensis HOM05D002497 ORTHO05D002697 1.5e-06 59.7 153 29.4
QL02p039295 Quercus lobata HOM05D002497 ORTHO05D002697 1.5e-06 59.7 161 32.3
DCAR_003518 Daucus carota HOM05D002497 ORTHO05D002697 2.0e-06 59.3 192 27.6
PSO017G0358 Papaver somniferum HOM05D002497 ORTHO05D002697 2.0e-06 59.3 180 28.9
Duzib264G0678 Durio zibethinus HOM05D002497 ORTHO05D002697 2.6e-06 58.9 159 30.8
FAN05G0632 Fragaria x ananassa HOM05D002497 ORTHO05D002697 2.6e-06 58.9 158 28.5
Nitab4.5_0003347g0120 Nicotiana tabacum HOM05D002497 ORTHO05D002697 2.6e-06 58.9 161 29.2
Sopen02g016240 Solanum pennellii HOM05D002497 ORTHO05D002697 2.6e-06 58.9 157 30.6
TWI60G1450 Tripterygium wilfordii HOM05D002497 ORTHO05D002697 2.6e-06 58.9 160 30.6
CANSAT01G2506 Cannabis sativa HOM05D002497 ORTHO05D002697 3.4e-06 58.5 158 29.1
CAN.G34.19 Capsicum annuum HOM05D002497 ORTHO05D002697 3.4e-06 58.5 180 31.1
Psat3g198800 Pisum sativum HOM05D002497 ORTHO05D002697 3.4e-06 58.5 163 31.3
VMungo1383G3650 Vigna mungo HOM05D002497 ORTHO05D002697 3.4e-06 58.5 158 28.5
Aqoxy3G03548 Aquilegia oxysepala HOM05D002497 ORTHO05D002697 4.5e-06 58.2 162 29.6
Haze_14478 Corylus avellana HOM05D002497 ORTHO05D002697 4.5e-06 58.2 158 27.2
FAN02G1345 Fragaria x ananassa HOM05D002497 ORTHO05D002697 4.5e-06 58.2 162 30.2
Glyma.08G241200 Glycine max HOM05D002497 ORTHO05D002697 4.5e-06 58.2 159 28.3
Glyma.18G263600 Glycine max HOM05D002497 ORTHO05D002697 4.5e-06 58.2 160 29.4
THA.LOC104822985 Tarenaya hassleriana HOM05D002497 ORTHO05D002697 4.5e-06 58.2 160 28.1
Thecc.04G089300 Theobroma cacao HOM05D002497 ORTHO05D002697 4.5e-06 58.2 152 30.9
TPR.G33465 Trifolium pratense HOM05D003516 ORTHO05D004068 4.5e-06 58.2 162 29.6
Actinidia01962 Actinidia chinensis HOM05D002497 ORTHO05D002697 5.8e-06 57.8 161 29.2
Cfa007615 Carpinus fangiana HOM05D002497 ORTHO05D002697 5.8e-06 57.8 158 27.2
COL.COLO4_12248 Corchorus olitorius HOM05D002497 ORTHO05D002697 5.8e-06 57.8 159 30.2
Thhalv10008168m.g Eutrema salsugineum HOM05D002497 ORTHO05D002697 5.8e-06 57.8 158 31.6
HanXRQChr15g0488431 Helianthus annuus HOM05D002497 ORTHO05D002697 5.8e-06 57.8 153 28.1
Potri.004G125800 Populus trichocarpa HOM05D002497 ORTHO05D002697 5.8e-06 57.8 161 30.4
Prupe.3G261300 Prunus persica HOM05D002497 ORTHO05D002697 5.8e-06 57.8 158 28.5
MD17G1054800 Malus domestica HOM05D002497 ORTHO05D002697 7.6e-06 57.4 158 29.7
Phvul.008G040000 Phaseolus vulgaris HOM05D002497 ORTHO05D002697 7.6e-06 57.4 158 28.5
FAN14G5248 Fragaria x ananassa HOM05D002497 ORTHO05D002697 9.9e-06 57.0 162 29.6
Gohir.D09G011200 Gossypium hirsutum HOM05D002497 ORTHO05D002697 9.9e-06 57.0 158 29.1
Gorai.006G013000 Gossypium raimondii HOM05D002497 ORTHO05D002697 9.9e-06 57.0 158 29.1
Sopen11g013750 Solanum pennellii HOM05D002497 ORTHO05D002697 9.9e-06 57.0 157 31.2
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 9.9e-06 57.0 161 31.7


User provided reference genes

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