Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 2.6e-197 693.0 748 100.0
HanXRQChr13g0425261 Helianthus annuus HOM05D004824 ORTHO05D003903 2.0e-109 401.0 291 89.7
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 1.3e-71 275.4 149 95.3
ECA246G0928 Erigeron canadensis HOM05D004824 ORTHO05D003903 1.2e-45 189.1 690 73.3
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 2.5e-43 181.4 146 63.0
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 3.9e-36 157.5 617 52.7
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 6.3e-34 150.2 168 45.2
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 6.1e-29 133.7 163 47.2
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 7.9e-29 133.3 157 46.5
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 1.1e-27 129.4 167 38.9
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 1.5e-27 129.0 148 48.6
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 5.7e-27 127.1 150 48.0
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 7.4e-27 126.7 169 40.2
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 2.8e-26 124.8 238 49.2
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 1.4e-25 122.5 141 48.2
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 2.4e-25 121.7 141 48.2
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 6.9e-25 120.2 165 41.2
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 2.6e-24 118.2 168 37.5
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 7.7e-24 116.7 167 40.7
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.3e-23 115.9 142 43.0
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 2.2e-23 115.2 135 45.9
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 2.2e-23 115.2 167 38.3
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 2.9e-23 114.8 162 37.0
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 5.0e-23 114.0 136 43.4
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 6.5e-23 113.6 169 37.9
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 8.5e-23 113.2 166 38.6
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 8.5e-23 113.2 166 38.6
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 1.1e-22 112.8 166 39.2
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 9.4e-22 109.8 168 38.7
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 1.2e-21 109.4 229 52.4
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 1.2e-21 109.4 155 41.3
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 2.1e-21 108.6 151 37.1
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 4.7e-21 107.5 150 40.7
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 6.1e-21 107.1 136 41.2
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 7.9e-21 106.7 136 40.4
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 1.0e-20 106.3 135 42.2
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 1.4e-20 105.9 136 42.6
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 1.4e-20 105.9 151 37.1
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 1.4e-20 105.9 171 38.6
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 1.4e-20 105.9 150 37.3
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 1.8e-20 105.5 171 34.5
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 2.3e-20 105.1 150 38.0
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 3.0e-20 104.8 169 33.7
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 3.9e-20 104.4 148 37.2
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 3.9e-20 104.4 147 36.7
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 1.5e-19 102.4 136 41.9
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 2.6e-19 101.7 163 34.4
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 2.6e-19 101.7 139 38.1
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 3.3e-19 101.3 173 33.5
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 4.4e-19 100.9 138 39.9
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 5.7e-19 100.5 149 37.6
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 5.7e-19 100.5 152 39.5
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 1.3e-18 99.4 237 37.6
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 1.7e-18 99.0 219 50.7
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 4.8e-18 97.4 149 36.9
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 6.3e-18 97.1 159 37.1
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 8.2e-18 96.7 154 35.1
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 1.1e-17 96.3 151 37.1
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 1.1e-17 96.3 145 38.6
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 1.1e-17 96.3 153 36.6
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 1.4e-17 95.9 168 33.9
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 1.8e-17 95.5 151 37.7
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.8e-17 95.5 145 37.9
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 3.1e-17 94.7 140 39.3
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 7.0e-17 93.6 145 37.9
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 7.0e-17 93.6 145 37.9
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 9.1e-17 93.2 187 31.0
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 1.2e-16 92.8 177 34.5
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 1.2e-16 92.8 141 40.4
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 1.5e-16 92.4 148 35.1
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 2.6e-16 91.7 145 37.2
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 4.5e-16 90.9 143 37.1
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 7.7e-16 90.1 169 33.1
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 7.7e-16 90.1 170 30.6
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 1.3e-15 89.4 165 33.3
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 1.7e-15 89.0 142 33.8
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 2.2e-15 88.6 139 33.8
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 2.9e-15 88.2 164 32.3
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 3.8e-15 87.8 121 42.1
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 5.0e-15 87.4 144 30.6
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 6.5e-15 87.0 142 33.8
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 6.5e-15 87.0 170 33.5
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 1.1e-14 86.3 168 29.8
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 1.4e-14 85.9 121 42.1
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 2.5e-14 85.1 168 31.5
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 2.5e-14 85.1 140 36.4
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 4.2e-14 84.3 168 31.0
Lsat_1_v5_gn_1_52160 Lactuca sativa HOM05D004824 ORTHO05D003903 4.2e-14 84.3 166 31.3
VMungo0251G3577 Vigna mungo HOM05D004824 ORTHO05D003903 4.2e-14 84.3 169 34.3
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 5.5e-14 84.0 138 35.5
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 7.2e-14 83.6 132 33.3
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 7.2e-14 83.6 168 31.0
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 9.4e-14 83.2 144 34.7
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 1.2e-13 82.8 143 35.0
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 2.1e-13 82.0 137 34.3
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 2.1e-13 82.0 144 34.0
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 1.0e-12 79.7 168 30.4
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 1.0e-12 79.7 167 29.9
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 1.0e-12 79.7 164 31.1
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 1.4e-12 79.3 168 31.0
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 1.4e-12 79.3 148 33.8
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 1.8e-12 79.0 150 33.3
CARHR118970 Cardamine hirsuta HOM05D004824 ORTHO05D003903 1.8e-12 79.0 263 40.7
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.8e-12 79.0 140 35.7
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 1.8e-12 79.0 143 33.6
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 2.3e-12 78.6 168 30.4
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 6.7e-12 77.0 165 28.5
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 8.8e-12 76.6 147 33.3
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 9.7e-11 73.2 169 28.4
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 1.7e-10 72.4 114 36.0
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 2.2e-10 72.0 90 42.2
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 2.2e-10 72.0 170 25.9
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 6.3e-10 70.5 173 26.6
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 2.4e-09 68.6 118 30.5
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 3.1e-09 68.2 116 35.3
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 4.1e-09 67.8 104 34.6
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 5.3e-09 67.4 148 31.1
Eucgr.F01187 Eucalyptus grandis HOM05D004824 ORTHO05D003903 9.1e-09 66.6 241 43.2
CiPaw.12G066600 Carya illinoinensis HOM05D007893 ORTHO05D010042 1.2e-08 66.2 168 30.4
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.6e-08 65.9 173 26.0
SHI28137 Sapria himalayana HOM05D008459 ORTHO05D003903 1.6e-08 65.9 109 35.8
SHI35543 Sapria himalayana HOM05D008459 ORTHO05D003903 2.6e-08 65.1 221 29.0
SHI48935 Sapria himalayana HOM05D008459 ORTHO05D003903 3.5e-08 64.7 262 22.9
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 5.9e-08 63.9 109 32.1
Medtr7g011520 Medicago truncatula HOM05D004824 ORTHO05D003903 5.9e-08 63.9 107 37.4
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.7e-07 62.4 131 32.8
arahy.Tifrunner.gnm1.ann1.F7MB9I Arachis hypogaea HOM05D004824 ORTHO05D003903 3.8e-07 61.2 93 38.7
SHI33202 Sapria himalayana HOM05D008459 ORTHO05D003903 3.8e-07 61.2 204 27.5
SHI35413 Sapria himalayana HOM05D008459 ORTHO05D003903 6.5e-07 60.5 241 25.7
Psat3g199560 Pisum sativum HOM05D004824 ORTHO05D003903 1.5e-06 59.3 121 30.6
arahy.Tifrunner.gnm1.ann1.AUE0A3 Arachis hypogaea HOM05D007893 ORTHO05D010042 2.5e-06 58.5 144 33.3
Carub.0001s1351 Capsella rubella HOM05D004824 ORTHO05D003903 2.5e-06 58.5 124 34.7
AUR62027511 Chenopodium quinoa HOM05D004824 ORTHO05D003903 2.5e-06 58.5 91 42.9
Sp1g12140 Schrenkiella parvula HOM05D004824 ORTHO05D017526 4.2e-06 57.8 125 36.0
SHI51070 Sapria himalayana HOM05D008459 ORTHO05D003903 5.5e-06 57.4 216 25.0


User provided reference genes

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