Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 7.8e-53 210.3 114 100.0
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 5.6e-51 204.1 114 95.6
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 3.6e-50 201.4 114 93.9
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 1.5e-48 196.1 114 92.1
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 7.8e-45 183.7 114 83.3
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 1.0e-44 183.3 114 80.7
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 1.0e-44 183.3 113 83.2
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 3.0e-44 181.8 114 82.5
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 3.9e-44 181.4 114 82.5
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 3.9e-44 181.4 114 81.6
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 3.9e-44 181.4 114 81.6
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 3.9e-44 181.4 114 81.6
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 5.0e-44 181.0 114 81.6
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 6.6e-44 180.6 112 82.1
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 8.6e-44 180.3 114 80.7
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 1.1e-43 179.9 110 83.6
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 1.1e-43 179.9 114 82.5
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 1.1e-43 179.9 114 80.7
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 3.3e-43 178.3 112 80.4
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 5.6e-43 177.6 112 80.4
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 7.3e-43 177.2 114 79.8
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 9.5e-43 176.8 112 79.5
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 9.5e-43 176.8 114 80.7
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 1.2e-42 176.4 114 80.7
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.2e-42 176.4 114 78.9
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.2e-42 176.4 114 79.8
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 1.2e-42 176.4 115 80.9
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 1.6e-42 176.0 115 80.0
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 1.6e-42 176.0 115 80.0
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.6e-42 176.0 115 80.0
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.6e-42 176.0 115 80.0
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 1.6e-42 176.0 112 79.5
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 1.6e-42 176.0 114 78.9
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 1.6e-42 176.0 115 80.0
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 1.6e-42 176.0 112 79.5
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 1.6e-42 176.0 115 80.0
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 2.1e-42 175.6 115 79.1
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 2.1e-42 175.6 115 79.1
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 3.6e-42 174.9 114 78.1
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 3.6e-42 174.9 114 80.7
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 3.6e-42 174.9 112 79.5
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 78.9
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 78.9
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 6.2e-42 174.1 114 78.9
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 8.1e-42 173.7 114 79.8
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 1.1e-41 173.3 114 79.8
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.4e-41 172.9 112 78.6
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 2.3e-41 172.2 114 78.1
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 2.3e-41 172.2 114 77.2
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 2.3e-41 172.2 115 78.3
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 3.1e-41 171.8 106 84.0
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 3.1e-41 171.8 114 78.1
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 75.4
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 77.2
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 75.4
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 75.4
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 1.2e-40 169.9 114 78.1
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.2e-40 169.9 114 75.4
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.2e-40 169.9 114 75.4
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 1.5e-40 169.5 112 77.7
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.5e-40 169.5 114 78.9
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 2.0e-40 169.1 112 76.8
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 2.0e-40 169.1 114 75.4
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 2.6e-40 168.7 112 77.7
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 2.6e-40 168.7 115 79.1
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 3.4e-40 168.3 114 75.4
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 4.4e-40 167.9 114 74.6
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 5.8e-40 167.5 114 75.4
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 5.8e-40 167.5 114 75.4
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 5.8e-40 167.5 114 77.2
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 7.5e-40 167.2 114 77.2
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 7.5e-40 167.2 114 77.2
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 7.5e-40 167.2 113 77.0
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 7.5e-40 167.2 114 74.6
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 7.5e-40 167.2 113 75.2
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 9.8e-40 166.8 104 82.7
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 9.8e-40 166.8 113 75.2
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 1.3e-39 166.4 112 76.8
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 1.3e-39 166.4 112 74.1
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 1.3e-39 166.4 112 76.8
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.3e-39 166.4 112 75.9
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 1.7e-39 166.0 114 73.7
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 2.2e-39 165.6 115 75.7
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 2.9e-39 165.2 112 74.1
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 3.7e-39 164.9 113 76.1
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 6.4e-39 164.1 114 75.4
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 6.4e-39 164.1 114 75.4
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 6.4e-39 164.1 114 72.8
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 1.1e-38 163.3 112 76.8
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 1.4e-38 162.9 114 75.4
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 1.4e-38 162.9 108 75.9
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 3.2e-38 161.8 115 73.9
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 5.4e-38 161.0 114 77.2
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 5.4e-38 161.0 114 77.2
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 5.4e-38 161.0 114 77.2
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 7.1e-38 160.6 114 75.4
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 9.2e-38 160.2 114 74.6
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 1.2e-37 159.8 114 76.3
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 1.2e-37 159.8 112 74.1
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.2e-37 159.8 146 63.0
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 2.7e-37 158.7 114 76.3
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 3.5e-37 158.3 143 61.5
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 4.6e-37 157.9 114 72.8
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 6.0e-37 157.5 114 75.4
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 6.0e-37 157.5 114 71.1
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 6.0e-37 157.5 114 72.8
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 3.9e-36 154.8 114 74.6
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 6.6e-36 154.1 140 61.4
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 9.5e-35 150.2 114 70.2
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 1.6e-34 149.4 104 74.0
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 1.4e-33 146.4 112 67.9
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 5.2e-33 144.4 114 68.4
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 2.0e-32 142.5 80 88.8
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.0e-32 142.5 91 80.2
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 3.4e-32 141.7 80 90.0
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 2.9e-31 138.7 77 92.2
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 4.9e-31 137.9 113 69.0
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 6.4e-31 137.5 84 83.3
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 7.1e-30 134.0 100 74.0
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 9.2e-30 133.7 77 87.0
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 6.0e-29 131.0 111 61.3
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 5.1e-28 127.9 83 77.1
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 5.1e-28 127.9 83 77.1
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.5e-27 126.3 102 66.7
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.6e-26 121.7 72 87.5
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 3.1e-25 118.6 77 79.2
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 3.1e-25 118.6 65 90.8
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 2.9e-23 112.1 77 70.1
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 1.9e-22 109.4 108 53.7
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 2.1e-21 105.9 112 51.8
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 6.0e-21 104.4 99 58.6
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 1.0e-20 103.6 114 52.6
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 1.7e-20 102.8 72 70.8
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 1.1e-19 100.1 77 70.1
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 2.5e-19 99.0 102 53.9
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 4.3e-19 98.2 77 70.1
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 3.6e-18 95.1 109 45.9
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 8.1e-18 94.0 63 74.6
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.4e-17 93.2 100 55.0
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 5.3e-17 91.3 65 69.2
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 5.8e-16 87.8 106 50.0
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 8.4e-15 84.0 82 51.2
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 1.4e-14 83.2 43 97.7
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 4.2e-14 81.6 57 75.4
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 4.2e-14 81.6 51 82.4
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 1.2e-13 80.1 43 93.0
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.6e-13 79.7 104 45.2
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 2.1e-13 79.3 45 86.7
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 2.1e-13 79.3 50 82.0
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 2.3e-12 75.9 95 49.5
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 3.0e-12 75.5 51 76.5
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 6.7e-12 74.3 43 86.0
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 8.7e-12 73.9 107 44.9
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 4.3e-11 71.6 55 63.6
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 5.6e-11 71.2 99 50.5
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 5.6e-11 71.2 92 52.2
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 5.6e-11 71.2 55 65.5
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 2.8e-10 68.9 95 44.2
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 1.1e-09 67.0 97 49.5
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 3.1e-09 65.5 92 42.4
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 4.0e-09 65.1 60 60.0
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 4.5e-08 61.6 59 49.2


User provided reference genes

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