Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 6.7e-246 853.6 436 100.0
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 2.0e-226 788.9 435 91.7
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 4.5e-226 787.7 436 92.4
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 2.5e-224 781.9 436 91.5
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 1.2e-207 726.5 445 84.9
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 8.8e-206 720.3 398 89.4
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 4.4e-205 718.0 443 82.6
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 1.3e-204 716.5 443 84.4
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 8.3e-204 713.8 443 84.2
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 1.8e-203 712.6 440 83.9
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 4.1e-203 711.4 440 83.0
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 7.0e-203 710.7 435 84.1
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 3.5e-202 708.4 437 81.9
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 7.7e-202 707.2 443 81.9
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 1.3e-201 706.4 442 82.1
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 1.3e-201 706.4 440 82.3
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 5.0e-201 704.5 442 82.4
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 5.0e-201 704.5 443 82.4
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 6.6e-201 704.1 443 81.7
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 8.6e-201 703.7 442 81.2
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 1.1e-200 703.4 399 87.5
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 3.3e-200 701.8 443 80.4
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 3.3e-200 701.8 401 87.3
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 7.2e-200 700.7 442 81.4
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 7.2e-200 700.7 447 80.5
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 9.5e-200 700.3 441 81.6
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 9.5e-200 700.3 439 82.0
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 1.2e-199 699.9 440 82.0
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 2.8e-199 698.7 444 80.9
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 2.8e-199 698.7 440 82.5
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 2.8e-199 698.7 447 80.8
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 6.1e-199 697.6 442 81.4
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 6.1e-199 697.6 447 81.0
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 6.1e-199 697.6 452 81.0
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 6.1e-199 697.6 444 82.0
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 8.0e-199 697.2 441 81.9
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 1.8e-198 696.0 399 87.5
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 1.8e-198 696.0 399 87.5
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 1.8e-198 696.0 443 80.8
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 2.3e-198 695.7 437 81.0
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 2.3e-198 695.7 437 81.0
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 2.3e-198 695.7 440 81.1
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 3.0e-198 695.3 410 86.3
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 3.0e-198 695.3 443 80.6
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 3.0e-198 695.3 440 81.4
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 4.0e-198 694.9 440 81.1
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 6.8e-198 694.1 440 81.1
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 6.8e-198 694.1 443 80.6
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 8.9e-198 693.7 401 86.8
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 8.9e-198 693.7 437 81.0
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 8.9e-198 693.7 440 82.5
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 1.2e-197 693.3 447 81.7
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.5e-197 693.0 443 81.0
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 1.5e-197 693.0 394 87.6
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 2.0e-197 692.6 444 80.9
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 2.6e-197 692.2 440 80.9
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 3.4e-197 691.8 440 80.9
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 4.4e-197 691.4 444 80.4
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 4.4e-197 691.4 400 86.0
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 5.7e-197 691.0 440 80.7
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 7.5e-197 690.6 402 86.6
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 7.5e-197 690.6 443 79.7
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.3e-196 689.9 440 80.7
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 1.3e-196 689.9 397 87.7
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 8.3e-196 687.2 441 81.0
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 1.1e-195 686.8 442 79.9
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 1.4e-195 686.4 437 81.7
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 1.4e-195 686.4 443 79.5
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 3.1e-195 685.3 441 80.0
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 4.1e-195 684.9 398 85.9
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 5.4e-195 684.5 436 80.7
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 7.0e-195 684.1 440 80.7
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 1.6e-194 682.9 437 78.7
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 2.0e-194 682.6 435 79.5
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 5.0e-193 677.9 437 79.4
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 4.3e-192 674.9 396 84.1
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 5.6e-192 674.5 446 77.1
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 7.3e-192 674.1 443 80.1
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 9.5e-192 673.7 396 83.8
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 2.1e-191 672.5 442 80.1
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 2.8e-191 672.2 438 79.5
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 3.6e-191 671.8 445 77.8
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 1.8e-190 669.5 441 79.4
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 1.8e-190 669.5 440 78.6
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 2.3e-190 669.1 403 84.4
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 5.2e-190 667.9 439 79.5
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 5.2e-190 667.9 439 79.5
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 5.2e-190 667.9 399 84.7
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 5.2e-190 667.9 443 78.6
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 6.8e-190 667.5 439 79.0
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 6.8e-190 667.5 417 81.1
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 1.2e-189 666.8 397 84.9
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 4.4e-189 664.8 396 84.3
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 5.8e-189 664.5 442 79.0
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 1.7e-188 662.9 436 79.4
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 3.7e-188 661.8 439 78.6
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 4.9e-188 661.4 442 78.3
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 4.9e-188 661.4 443 78.6
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 4.9e-188 661.4 443 78.6
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 1.2e-186 656.8 439 78.6
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.2e-186 656.8 436 77.8
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 2.0e-186 656.0 439 78.6
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 1.7e-185 652.9 396 82.8
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 1.7e-185 652.9 396 82.8
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 3.0e-185 652.1 440 77.3
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 3.0e-185 652.1 440 77.3
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 6.6e-185 651.0 429 77.4
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 9.5e-184 647.1 413 80.1
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.1e-182 643.7 388 83.2
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 6.8e-182 641.0 398 79.4
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 6.8e-182 641.0 433 76.0
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 5.8e-181 637.9 421 77.4
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 2.9e-180 635.6 430 75.3
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 4.1e-179 631.7 398 78.6
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 3.5e-178 628.6 478 70.5
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 2.3e-177 625.9 471 70.3
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 1.9e-176 622.9 381 81.1
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.9e-176 622.9 440 75.5
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 6.4e-172 607.8 380 82.1
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 1.4e-171 606.7 440 73.6
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 3.1e-166 589.0 444 71.8
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.4e-163 580.1 362 81.2
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 1.8e-158 563.1 394 77.4
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 6.4e-156 554.7 307 90.9
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 1.2e-154 550.4 356 79.8
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 4.6e-154 548.5 388 68.8
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 1.3e-151 540.4 394 69.5
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 1.4e-150 537.0 380 68.2
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 1.9e-147 526.6 363 69.4
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 6.0e-146 521.5 426 64.8
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 6.7e-145 518.1 377 69.2
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 8.7e-145 517.7 377 69.2
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.5e-144 516.9 409 62.6
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 3.3e-144 515.8 361 72.6
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 9.6e-144 514.2 370 68.4
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 2.1e-143 513.1 396 66.4
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 4.0e-142 508.8 366 66.7
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 7.6e-141 504.6 366 65.0
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 4.9e-140 501.9 402 63.4
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.1e-136 490.7 393 59.5
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 2.0e-133 479.9 392 59.4
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 4.5e-133 478.8 317 77.0
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 4.3e-128 462.2 360 61.9
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 1.2e-117 427.6 365 61.4
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 7.7e-101 371.7 367 55.3
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 8.5e-92 341.7 302 59.3
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 8.6e-84 315.1 226 70.8
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 4.9e-71 272.7 187 78.1
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.1e-70 271.6 328 46.0
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 2.3e-65 253.8 127 93.7
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.7e-60 237.7 139 87.1
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 3.0e-60 236.9 198 60.6
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 3.7e-55 219.9 160 68.1
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.5e-40 171.4 162 54.9
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 6.4e-39 166.0 119 68.1
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 2.5e-35 154.1 111 75.7
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 2.0e-32 144.4 81 88.9
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 9.9e-32 142.1 82 86.6
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 1.3e-31 141.7 112 62.5
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.6e-26 124.8 80 68.8
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 2.3e-20 104.4 103 56.3
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 1.5e-19 101.7 61 73.8
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.0e-15 89.0 94 51.1
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 2.6e-08 64.3 35 85.7


User provided reference genes

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