Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 2130.9 1130 100.0
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1941.8 1131 88.8
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1914.4 1131 87.8
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1867.0 1131 86.0
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1796.2 1133 82.3
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1762.7 1130 80.2
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1751.5 1130 79.9
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1751.1 1143 80.0
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1749.6 1131 79.8
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1740.7 1130 79.0
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1736.9 1134 79.5
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1726.5 1132 77.8
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1725.3 1133 77.8
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1725.3 1131 76.8
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1722.2 1131 76.7
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1720.3 1136 77.8
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1719.5 1139 78.4
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1715.7 1140 78.5
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1715.3 1141 78.8
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1714.9 1133 79.5
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1714.5 1140 77.3
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1714.1 1136 77.4
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1708.0 1131 77.4
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1698.3 1137 77.3
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1692.6 1132 76.6
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1687.9 1140 77.3
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1687.5 1134 75.1
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1686.0 1135 76.8
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1685.6 1130 76.1
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1684.5 1136 77.4
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1681.4 1135 76.5
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1681.0 1133 75.7
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1679.1 1130 75.8
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1677.9 1130 76.4
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1673.3 1133 75.1
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1672.1 1133 74.9
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1670.2 1134 76.3
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1670.2 1130 75.5
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1669.8 1131 76.8
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1669.8 1131 76.8
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1669.1 1133 75.9
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1667.9 1131 76.7
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1666.7 1133 74.8
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1666.4 1133 74.5
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1665.6 1136 75.1
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1661.7 1137 76.3
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1657.1 1133 75.6
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1656.0 1137 76.9
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1649.8 1183 72.8
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1648.6 1135 75.4
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1643.2 1130 74.1
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1626.7 1130 73.6
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1625.1 1104 76.1
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1621.3 1141 73.5
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1587.0 1130 72.4
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1584.7 1130 72.3
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1582.8 1138 72.1
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1579.3 1134 71.6
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1577.8 1132 70.3
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1568.9 1134 71.3
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1566.6 1144 70.7
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1563.1 1130 71.2
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1559.7 1140 69.6
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1550.8 1130 70.6
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1550.0 1070 73.6
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1548.9 1135 70.6
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1548.5 1136 69.3
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1547.3 1136 69.4
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1546.2 1136 69.1
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1544.3 1137 71.9
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1542.7 1030 76.6
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1541.2 1136 68.8
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1535.0 1013 78.8
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1533.5 1133 70.1
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1533.5 1136 68.8
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1531.9 1135 71.2
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1530.8 1140 67.9
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1528.8 1150 70.6
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1528.8 1150 70.6
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1523.5 1148 70.5
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1521.5 1136 68.7
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1519.6 1136 68.6
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1518.8 1136 68.3
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1515.4 1136 68.4
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1513.8 1103 72.3
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1506.9 1136 68.3
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1505.0 1136 68.1
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1503.4 1134 69.8
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1500.7 1140 66.8
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1499.2 1135 68.4
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1491.1 1135 67.9
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1478.0 1079 70.0
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1475.7 1073 72.6
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1472.2 1034 72.2
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1462.6 924 80.1
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1433.7 923 78.7
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1409.0 1135 67.2
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1404.4 1129 66.8
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1378.6 1157 62.7
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1368.2 1097 66.6
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1362.8 1126 63.9
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1312.4 1072 61.4
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1305.0 1067 61.7
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1296.2 896 73.0
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1274.2 886 73.1
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1218.8 823 76.8
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1149.4 794 75.7
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1135.2 892 66.0
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 1098.2 1074 52.2
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 1.5e-310 1069.7 1082 50.0
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 1.2e-299 1033.5 672 78.4
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 4.7e-291 1005.0 1076 48.3
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 3.3e-289 998.8 759 67.1
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 4.5e-286 988.4 1069 49.2
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 2.0e-265 919.8 604 77.3
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 1.8e-242 843.6 945 52.7
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 1.2e-214 751.1 1087 41.1
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 3.8e-208 729.6 614 61.6
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 3.5e-169 600.1 421 78.1
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 1.0e-157 562.0 366 75.1
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 3.2e-151 540.4 432 68.5
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 2.5e-119 434.5 357 61.9
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 1.3e-104 385.6 314 64.6
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 9.0e-93 346.3 1183 27.4
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 2.7e-89 334.7 316 59.5
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 5.6e-87 327.0 335 60.9
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 1.6e-86 325.5 1142 26.8
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 5.8e-84 317.0 367 49.0
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 3.8e-67 261.2 333 46.8
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 2.7e-65 255.0 321 49.8
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 4.8e-46 191.0 149 75.8
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 4.7e-33 147.9 204 39.7
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 8.0e-33 147.1 100 79.0
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 2.2e-30 139.0 107 73.8
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 9.5e-26 123.6 86 79.1
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 2.8e-25 122.1 70 77.1
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 8.0e-25 120.6 86 77.9
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 8.0e-25 120.6 69 78.3
RcHm_v2.0_Chr0c29g0501111 Rosa chinensis HOM05D005483 ORTHO05D000581 1.3e-06 60.1 45 75.6


User provided reference genes

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