Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 0.0e+00 1221.1 673 100.0
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 3.2e-194 682.6 684 60.2
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 1.4e-173 614.0 689 53.1
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 1.8e-144 517.3 686 51.0
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 3.7e-78 297.0 593 38.8
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.0e-76 291.2 659 37.2
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 1.9e-66 258.1 697 39.0
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 1.7e-62 245.0 585 34.5
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 2.7e-60 237.7 616 33.6
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 3.5e-60 237.3 575 32.9
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 3.5e-60 237.3 572 36.0
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 3.3e-58 230.7 661 38.1
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 2.8e-57 227.6 596 34.7
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 2.8e-57 227.6 585 35.7
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 6.2e-57 226.5 572 34.8
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.8e-56 224.9 552 34.1
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 4.0e-56 223.8 612 31.7
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 4.0e-56 223.8 592 34.0
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 4.4e-55 220.3 545 33.8
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 7.6e-55 219.5 567 33.9
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 1.3e-54 218.8 560 34.3
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 3.8e-54 217.2 577 34.8
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 1.2e-52 212.2 604 32.5
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 2.7e-52 211.1 568 34.9
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 6.0e-52 209.9 578 34.6
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 7.8e-52 209.5 536 34.0
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 1.0e-51 209.1 581 31.7
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 1.7e-51 208.4 629 31.2
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 5.1e-51 206.8 559 32.7
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 1.5e-50 205.3 585 34.7
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 1.5e-50 205.3 639 29.9
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 1.2e-49 202.2 610 32.6
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 1.6e-49 201.8 565 33.6
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.6e-49 200.7 552 32.4
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 4.7e-49 200.3 580 32.6
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.8e-48 198.4 673 30.6
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 4.0e-48 197.2 596 32.2
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 4.0e-48 197.2 616 30.0
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 4.0e-48 197.2 670 30.0
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 1.5e-47 195.3 560 34.8
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 1.5e-47 195.3 560 34.8
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 2.0e-47 194.9 616 35.1
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.6e-47 194.5 563 32.3
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 3.4e-47 194.1 595 32.3
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 4.4e-47 193.7 549 32.2
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 4.4e-47 193.7 600 32.8
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 5.8e-47 193.4 571 35.4
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 9.9e-47 192.6 579 36.3
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 9.9e-47 192.6 583 35.0
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 9.9e-47 192.6 572 32.3
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 1.3e-46 192.2 590 33.2
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 4.9e-46 190.3 674 30.3
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 6.4e-46 189.9 585 36.2
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 6.4e-46 189.9 585 36.2
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 1.9e-45 188.3 609 30.0
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 1.9e-45 188.3 505 34.7
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.9e-45 188.3 581 33.6
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 2.4e-45 188.0 674 30.7
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.4e-45 188.0 626 29.7
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.2e-45 187.6 574 30.8
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 9.3e-45 186.0 594 30.6
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 1.6e-44 185.3 587 29.8
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 2.1e-44 184.9 595 36.3
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.7e-44 184.5 660 28.3
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 2.7e-44 184.5 540 33.0
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 4.6e-44 183.7 571 34.7
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 6.0e-44 183.3 625 29.1
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 7.8e-44 183.0 556 32.4
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 1.0e-43 182.6 588 36.6
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.3e-43 181.4 554 31.9
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 3.0e-43 181.0 630 31.3
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 1.1e-42 179.1 600 35.7
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 1.9e-42 178.3 517 32.1
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 3.3e-42 177.6 603 35.7
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 7.3e-42 176.4 579 31.1
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 1.3e-41 175.6 577 30.8
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 2.8e-41 174.5 611 35.0
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 6.2e-41 173.3 624 28.0
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 1.8e-40 171.8 593 33.6
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 1.8e-40 171.8 557 35.7
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 5.3e-40 170.2 494 29.6
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 6.9e-40 169.9 495 30.1
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 9.0e-40 169.5 585 28.2
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 3.4e-39 167.5 648 31.0
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 3.4e-39 167.5 586 29.5
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 4.5e-39 167.2 588 31.5
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 5.8e-39 166.8 593 29.3
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 7.6e-39 166.4 618 30.1
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 7.6e-39 166.4 587 34.2
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 7.6e-39 166.4 580 30.0
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 9.9e-39 166.0 626 27.5
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 2.2e-38 164.9 583 33.8
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 1.1e-37 162.5 629 33.7
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.4e-37 162.2 505 29.1
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 1.9e-37 161.8 616 27.9
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 3.2e-37 161.0 486 29.8
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 5.4e-37 160.2 530 30.0
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 1.0e-35 156.0 645 28.1
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 8.7e-35 152.9 622 29.9
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 1.1e-34 152.5 610 27.5
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 5.6e-34 150.2 553 29.5
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 5.6e-34 150.2 661 28.9
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 4.8e-33 147.1 533 30.6
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 2.0e-31 141.7 690 29.4
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 2.6e-31 141.4 675 26.7
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 3.4e-31 141.0 586 29.5
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 4.9e-30 137.1 648 26.1
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 4.2e-29 134.0 92 68.5
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 5.5e-29 133.7 730 25.9
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 9.3e-29 132.9 605 27.6
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 1.2e-28 132.5 532 34.0
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 4.6e-28 130.6 792 29.3
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 4.6e-28 130.6 672 28.6
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 3.0e-27 127.9 690 25.1
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.1e-26 125.9 799 26.5
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 1.9e-26 125.2 259 39.0
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 4.3e-26 124.0 740 28.1
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 4.8e-25 120.6 140 46.4
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 4.8e-25 120.6 803 26.2
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 2.2e-22 111.7 102 51.0
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 6.5e-22 110.2 393 31.8
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 8.4e-22 109.8 338 32.5
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 8.4e-22 109.8 393 30.5
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 5.5e-21 107.1 531 28.1
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 1.6e-20 105.5 337 32.0
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 5.1e-19 100.5 344 31.1
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.9e-18 98.6 137 43.8
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 5.7e-18 97.1 369 30.4
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 7.4e-18 96.7 154 43.5
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.3e-17 95.9 88 56.8
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 1.3e-17 95.9 425 25.9
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 2.8e-17 94.7 329 29.8
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.8e-16 92.0 401 28.2
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.8e-16 92.0 744 23.7
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.4e-16 91.7 479 25.9
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 6.9e-16 90.1 91 52.7
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 1.2e-15 89.4 159 39.0
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 3.8e-14 84.3 522 26.4
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 5.0e-14 84.0 469 25.4
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 8.5e-14 83.2 90 45.6
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 1.1e-13 82.8 92 40.2
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.6e-12 79.0 342 27.5
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 3.9e-11 74.3 269 26.4
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 8.7e-11 73.2 63 52.4
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 1.5e-10 72.4 268 25.0
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.3e-10 71.2 87 47.1
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 5.7e-10 70.5 165 34.5
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 5.7e-10 70.5 87 47.1
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 1.3e-09 69.3 83 41.0
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.4e-08 65.9 87 37.9
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 4.1e-08 64.3 82 37.8
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 9.1e-08 63.2 58 46.6
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 3.8e-06 57.8 326 35.3
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 3.8e-06 57.8 326 35.3
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 6.5e-06 57.0 396 26.3
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 8.5e-06 56.6 78 38.5


User provided reference genes

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