Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 4940.6 2524 100.0
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 4199.8 2569 85.4
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 4168.6 2552 84.7
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3549.6 2547 72.7
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3508.8 2551 72.5
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3431.0 2553 71.0
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3411.3 2549 70.0
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3383.6 2552 69.2
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3369.7 2552 69.3
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3362.4 2549 69.1
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3357.4 2551 69.0
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3352.4 2561 68.8
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3340.8 2556 68.9
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3325.8 2582 68.2
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3323.1 2576 68.0
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 3320.4 2555 68.3
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3316.9 2557 68.4
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3314.2 2559 68.3
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3313.1 2595 67.5
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3309.6 2561 67.9
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3306.5 2559 68.3
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 3293.1 2549 67.9
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3286.9 2557 67.8
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3280.3 2561 67.8
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3276.1 2569 67.3
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3269.6 2549 67.5
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3269.2 2558 67.2
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3265.3 2557 67.1
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3260.7 2561 67.4
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3252.2 2553 67.4
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 3246.4 2879 62.3
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3231.4 2564 66.8
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3217.2 2558 66.1
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 3212.6 2549 66.8
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 3206.4 2566 66.0
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 3206.0 2356 71.4
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 3205.2 2548 66.1
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 3190.2 2549 65.8
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3160.2 2621 64.7
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 3152.8 2556 65.3
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3133.6 2555 65.5
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 3126.7 2571 65.1
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 3125.5 2563 64.2
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 3118.6 2551 64.8
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3103.9 2567 64.6
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3097.4 2565 64.4
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 3086.2 2564 63.7
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 3076.6 2557 63.4
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3058.9 2548 63.9
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3027.3 2230 71.0
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 3023.0 2554 63.1
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 3009.9 2554 62.6
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 3008.8 2548 62.7
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2990.3 2568 62.7
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 2987.2 2556 62.8
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 2966.4 2564 62.0
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2942.5 2558 61.5
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2940.2 2542 61.9
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2936.0 2545 61.6
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 2928.3 2577 61.0
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 2924.4 2575 61.2
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 2923.3 2545 61.2
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2923.3 2555 61.4
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 2911.3 2629 61.7
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 2892.8 2427 63.9
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 2816.6 2576 59.4
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 2798.8 2233 66.4
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 2789.6 1866 77.3
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 2788.1 2086 70.5
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2628.6 1888 72.7
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2601.2 2034 67.0
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2459.1 1734 73.7
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2380.5 1641 75.0
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2253.4 2311 53.4
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2199.5 1843 63.5
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2179.8 1725 68.2
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2137.1 1777 65.3
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 2073.1 1688 65.4
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 2063.1 2699 45.6
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2016.1 1753 62.4
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 2010.0 2774 44.5
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1671.4 2540 41.8
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1652.9 1187 72.5
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1614.0 1177 72.7
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1611.7 1144 73.4
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1606.7 1421 61.9
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1573.9 1098 74.7
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1521.9 1497 57.0
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1493.8 2781 37.0
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1481.5 1142 69.4
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1467.2 1150 68.8
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1424.1 2667 37.0
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1377.5 1629 49.2
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1353.6 1488 52.5
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1335.1 1205 61.1
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1321.6 854 78.0
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1264.6 1172 59.6
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1196.0 900 67.4
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1169.8 744 79.2
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 4.4e-289 999.6 672 76.3
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 8.0e-275 952.2 1141 48.4
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 2.2e-272 944.1 1048 52.1
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 5.9e-262 909.4 609 78.0
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 3.6e-243 847.0 1039 48.5
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 2.5e-228 797.7 633 67.0
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 9.6e-220 769.2 920 48.4
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 2.6e-217 761.1 923 48.6
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 1.6e-195 688.7 680 55.6
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 2.8e-195 688.0 680 55.0
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 9.7e-188 662.9 838 50.2
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 3.8e-184 651.0 746 51.5
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 5.3e-178 630.6 494 67.4
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 2.3e-173 615.1 879 43.9
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 1.7e-171 609.0 489 65.2
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.4e-170 605.9 384 76.8
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 2.0e-169 602.1 613 58.6
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 1.2e-166 592.8 691 49.2
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 1.4e-165 589.3 496 64.5
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 3.0e-149 535.0 555 54.6
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 6.4e-147 527.3 485 59.0
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 2.4e-138 498.8 483 54.2
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 1.3e-120 439.9 514 48.4
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 3.6e-110 405.2 264 73.9
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 2.1e-97 362.8 239 79.5
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 1.8e-93 349.7 346 54.3
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.5e-90 339.3 180 90.6
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 4.5e-84 318.5 204 82.4
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 1.3e-83 317.0 248 64.9
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 5.0e-83 315.1 180 83.3
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 1.2e-76 293.9 151 96.7
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 1.1e-74 287.3 208 68.8
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 1.1e-74 287.3 219 65.8
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 2.8e-70 272.7 158 81.6
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 4.2e-66 258.8 321 47.4
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 5.7e-63 248.4 250 55.2
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 7.7e-60 238.0 325 43.7
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 1.0e-59 237.7 320 43.4
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 3.3e-55 222.6 321 43.6
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 7.5e-55 221.5 329 42.6
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 3.8e-51 209.1 337 38.9
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 3.4e-47 196.1 133 75.2
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 9.8e-47 194.5 256 44.1
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 1.8e-45 190.3 107 91.6
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 1.4e-40 174.1 1345 22.8
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 9.2e-37 161.4 116 72.4
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 1.4e-32 147.5 116 70.7
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 9.2e-29 134.8 143 51.7
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 3.3e-26 126.3 142 47.9
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 1.1e-24 121.3 96 70.8
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 1.1e-24 121.3 96 70.8
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 3.4e-23 116.3 81 72.8
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 3.2e-21 109.8 120 49.2
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 5.0e-19 102.4 79 67.1
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 8.1e-17 95.1 125 54.4
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 4.0e-16 92.8 102 51.0
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 1.3e-14 87.8 182 34.6
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 2.9e-14 86.7 67 65.7
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 2.9e-14 86.7 67 65.7
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 5.4e-13 82.4 121 46.3
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 1.2e-12 81.3 88 46.6
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 2.1e-12 80.5 45 88.9
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 4.6e-12 79.3 74 52.7
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 2.3e-11 77.0 74 56.8
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 5.1e-11 75.9 119 47.9
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 8.6e-11 75.1 56 64.3
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 1.1e-10 74.7 51 74.5
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 1.5e-10 74.3 56 62.5
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 1.9e-10 73.9 202 31.2
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 9.5e-10 71.6 72 58.3
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.8e-09 70.1 79 60.8
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 1.4e-08 67.8 48 68.8
TPR.G26502 Trifolium pratense HOM05D000051 ORTHO05D000015 3.4e-07 63.2 104 42.3
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 5.8e-07 62.4 96 42.7
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 1.3e-06 61.2 53 52.8


User provided reference genes

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