Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0538971 Helianthus annuus HOM05D003060 ORTHO05D001716 2.3e-152 542.3 301 100.0
HanXRQChr17g0539161 Helianthus annuus HOM05D003060 ORTHO05D001716 8.6e-51 204.9 122 80.3
Lsat_1_v5_gn_3_26180 Lactuca sativa HOM05D003060 ORTHO05D001716 2.8e-33 146.7 115 60.0
vmacro08136 Vaccinium macrocarpon HOM05D003060 ORTHO05D001716 2.1e-25 120.6 118 49.2
Lj6A674G26 Lonicera japonica HOM05D003060 ORTHO05D001716 9.0e-24 115.2 172 40.1
Rhsim04G0220500 Rhododendron simsii HOM05D003060 ORTHO05D001716 2.2e-22 110.5 121 47.9
CSS0018788 Camellia sinensis var. sinensis HOM05D003060 ORTHO05D001716 2.9e-22 110.2 117 49.6
CSS0035849 Camellia sinensis var. sinensis HOM05D003060 ORTHO05D001716 6.4e-22 109.0 186 39.2
CSS0034622 Camellia sinensis var. sinensis HOM05D003060 ORTHO05D001716 1.4e-21 107.8 186 38.2
MBI19_g13125_MAGBIO Magnolia biondii HOM05D003060 ORTHO05D001716 3.2e-21 106.7 116 47.4
Actinidia19783 Actinidia chinensis HOM05D003060 ORTHO05D001716 1.6e-20 104.4 115 46.1
Thhalv10003560m.g Eutrema salsugineum HOM05D003060 ORTHO05D001716 2.1e-20 104.0 124 44.4
TAR636G0574 Trochodendron aralioides HOM05D003060 ORTHO05D001716 2.1e-20 104.0 114 44.7
Carub.0006s2494 Capsella rubella HOM05D003060 ORTHO05D001716 2.7e-20 103.6 138 40.6
Sc09g0003030 Simmondsia chinensis HOM05D003060 ORTHO05D001716 2.7e-20 103.6 113 46.9
CARHR186170 Cardamine hirsuta HOM05D003060 ORTHO05D001716 3.5e-20 103.2 124 44.4
DCAR_022153 Daucus carota HOM05D003060 ORTHO05D001716 4.6e-20 102.8 114 43.9
DCAR_003342 Daucus carota HOM05D003060 ORTHO05D001716 2.3e-19 100.5 115 44.3
Sp2g20810 Schrenkiella parvula HOM05D003060 ORTHO05D001716 2.3e-19 100.5 124 43.5
TAR633G1311 Trochodendron aralioides HOM05D003060 ORTHO05D001716 2.3e-19 100.5 115 43.5
vmacro19622 Vaccinium macrocarpon HOM05D003060 ORTHO05D001716 2.3e-19 100.5 142 41.5
Actinidia19785 Actinidia chinensis HOM05D003060 ORTHO05D001716 3.0e-19 100.1 133 41.4
CDE02G1047 Ceratophyllum demersum HOM05D003060 ORTHO05D001716 3.9e-19 99.8 115 44.3
AL6G39380 Arabidopsis lyrata HOM05D003060 ORTHO05D001716 8.7e-19 98.6 138 39.1
CSS0019912 Camellia sinensis var. sinensis HOM05D003060 ORTHO05D001716 8.7e-19 98.6 186 36.6
CSS0023784 Camellia sinensis var. sinensis HOM05D003060 ORTHO05D001716 8.7e-19 98.6 186 36.6
TAR362G0619 Trochodendron aralioides HOM05D003060 ORTHO05D001716 1.1e-18 98.2 164 37.8
AT5G27650 Arabidopsis thaliana HOM05D003060 ORTHO05D001716 1.9e-18 97.4 138 38.4
arahy.Tifrunner.gnm1.ann1.U2HTAJ Arachis hypogaea HOM05D003060 ORTHO05D001716 1.9e-18 97.4 115 44.3
ATR0706G064 Amborella trichopoda HOM05D003060 ORTHO05D001716 2.5e-18 97.1 194 34.5
CDE08G1209 Ceratophyllum demersum HOM05D003060 ORTHO05D001716 3.3e-18 96.7 115 42.6
Gohir.A05G272000 Gossypium hirsutum HOM05D003060 ORTHO05D001716 3.3e-18 96.7 126 41.3
Nn3g21411 Nelumbo nucifera HOM05D003060 ORTHO05D001716 3.3e-18 96.7 115 41.7
arahy.Tifrunner.gnm1.ann1.LGT5H6 Arachis hypogaea HOM05D003060 ORTHO05D001716 4.3e-18 96.3 115 43.5
Rhsim05G0141600 Rhododendron simsii HOM05D003060 ORTHO05D001716 4.3e-18 96.3 196 33.7
Gorai.009G287300 Gossypium raimondii HOM05D003060 ORTHO05D001716 5.6e-18 95.9 126 41.3
Lj9C129G1 Lonicera japonica HOM05D003060 ORTHO05D001716 5.6e-18 95.9 115 43.5
MD12G1216400 Malus domestica HOM05D003060 ORTHO05D001716 7.4e-18 95.5 126 40.5
Prupe.6G322700 Prunus persica HOM05D003060 ORTHO05D001716 7.4e-18 95.5 124 42.7
TWI09G1399 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 7.4e-18 95.5 114 45.6
Lsat_1_v5_gn_9_87441 Lactuca sativa HOM05D003060 ORTHO05D001716 1.3e-17 94.7 109 43.1
A09p05370 Brassica napus HOM05D003060 ORTHO05D001716 1.6e-17 94.4 126 41.3
BraA09t36175Z Brassica rapa HOM05D003060 ORTHO05D001716 1.6e-17 94.4 126 41.3
Ciclev10000070m.g Citrus clementina HOM05D003060 ORTHO05D001716 1.6e-17 94.4 115 42.6
GSVIVG01031118001 Vitis vinifera HOM05D003060 ORTHO05D001716 1.6e-17 94.4 115 43.5
COL.COLO4_13891 Corchorus olitorius HOM05D003060 ORTHO05D001716 2.1e-17 94.0 114 37.7
Dinv40309 Davidia involucrata HOM05D003060 ORTHO05D001716 2.1e-17 94.0 115 42.6
Gohir.D05G274200 Gossypium hirsutum HOM05D003060 ORTHO05D001716 2.1e-17 94.0 126 40.5
Duzib211G0658 Durio zibethinus HOM05D003060 ORTHO05D001716 3.7e-17 93.2 115 41.7
Ah.06g189640 Amaranthus hybridus HOM05D003060 ORTHO05D001716 4.8e-17 92.8 117 41.0
Aqoxy2G03022 Aquilegia oxysepala HOM05D003060 ORTHO05D001716 4.8e-17 92.8 173 34.7
BcaB04g19683 Brassica carinata HOM05D003060 ORTHO05D001716 4.8e-17 92.8 126 41.3
C09p05850 Brassica napus HOM05D003060 ORTHO05D001716 4.8e-17 92.8 126 41.3
BolC9t53512H Brassica oleracea HOM05D003060 ORTHO05D001716 4.8e-17 92.8 126 41.3
Cfa006614 Carpinus fangiana HOM05D003060 ORTHO05D001716 4.8e-17 92.8 115 45.2
CiPaw.08G163000 Carya illinoinensis HOM05D003060 ORTHO05D001716 6.2e-17 92.4 121 42.1
MELO3C004230.2 Cucumis melo HOM05D003060 ORTHO05D001716 6.2e-17 92.4 165 39.4
PSO063G5863 Papaver somniferum HOM05D003060 ORTHO05D001716 8.1e-17 92.0 115 43.5
Duzib177G0733 Durio zibethinus HOM05D003060 ORTHO05D001716 1.1e-16 91.7 119 40.3
Migut.N01988 Erythranthe guttata HOM05D003060 ORTHO05D001716 1.1e-16 91.7 115 43.5
THA.LOC104802799 Tarenaya hassleriana HOM05D003060 ORTHO05D001716 1.1e-16 91.7 115 42.6
CsaV3_2G006550 Cucumis sativus L. HOM05D003060 ORTHO05D001716 3.1e-16 90.1 182 38.5
Eucgr.H04503 Eucalyptus grandis HOM05D003060 ORTHO05D001716 3.1e-16 90.1 115 42.6
SHI18114 Sapria himalayana HOM05D003060 ORTHO05D001716 3.1e-16 90.1 116 42.2
Haze_04161 Corylus avellana HOM05D003060 ORTHO05D001716 4.0e-16 89.7 115 41.7
Duzib116G0105 Durio zibethinus HOM05D003060 ORTHO05D001716 4.0e-16 89.7 119 39.5
Sc16g0008550 Simmondsia chinensis HOM05D003060 ORTHO05D001716 4.0e-16 89.7 116 41.4
Thecc.08G198500 Theobroma cacao HOM05D003060 ORTHO05D001716 4.0e-16 89.7 119 39.5
AUR62000788 Chenopodium quinoa HOM05D003060 ORTHO05D001716 5.3e-16 89.4 115 39.1
Nitab4.5_0002344g0090 Nicotiana tabacum HOM05D003060 ORTHO05D001716 5.3e-16 89.4 127 38.6
Peaxi162Scf00534g00111 Petunia axillaris HOM05D003060 ORTHO05D001716 5.3e-16 89.4 131 36.6
Atru.chr2.14 Acer truncatum HOM05D003060 ORTHO05D001716 6.9e-16 89.0 115 40.0
Dinv30789 Davidia involucrata HOM05D003060 ORTHO05D001716 6.9e-16 89.0 115 41.7
PSO782G3442 Papaver somniferum HOM05D003060 ORTHO05D001716 6.9e-16 89.0 184 36.4
ClCG02G015530 Citrullus lanatus HOM05D003060 ORTHO05D001716 9.0e-16 88.6 165 37.6
Lalb_Chr18g0045701 Lupinus albus HOM05D003060 ORTHO05D001716 9.0e-16 88.6 115 40.9
Potri.005G026800 Populus trichocarpa HOM05D003060 ORTHO05D001716 9.0e-16 88.6 115 42.6
EL10Ac4g09376 Beta vulgaris HOM05D003060 ORTHO05D001716 1.2e-15 88.2 117 38.5
Manes.09G169200 Manihot esculenta HOM05D003060 ORTHO05D001716 1.2e-15 88.2 114 40.4
Nitab4.5_0004754g0020 Nicotiana tabacum HOM05D003060 ORTHO05D001716 1.5e-15 87.8 127 38.6
Phvul.006G090511 Phaseolus vulgaris HOM05D003060 ORTHO05D001716 1.5e-15 87.8 115 40.0
Phvul.006G090600 Phaseolus vulgaris HOM05D003060 ORTHO05D001716 1.5e-15 87.8 117 39.3
AUR62005179 Chenopodium quinoa HOM05D003060 ORTHO05D001716 2.0e-15 87.4 117 39.3
HanXRQChr11g0339461 Helianthus annuus HOM05D003060 ORTHO05D001716 2.0e-15 87.4 115 39.1
Nitab4.5_0003749g0010 Nicotiana tabacum HOM05D003060 ORTHO05D001716 2.0e-15 87.4 108 42.6
Hund21701 Selenicereus undatus HOM05D003060 ORTHO05D001716 2.0e-15 87.4 118 40.7
Atru.chr4.2820 Acer truncatum HOM05D003060 ORTHO05D001716 2.6e-15 87.0 113 43.4
TWI36G0905 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 2.6e-15 87.0 178 35.4
Sabra13G0021300 Salix brachista HOM05D003060 ORTHO05D001716 3.4e-15 86.7 115 41.7
Medtr7g113180 Medicago truncatula HOM05D003060 ORTHO05D001716 4.5e-15 86.3 117 40.2
TWI56G0319 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 5.8e-15 85.9 115 40.9
COL.COLO4_05531 Corchorus olitorius HOM05D003060 ORTHO05D001716 7.6e-15 85.5 115 39.1
VMungo0540G1887 Vigna mungo HOM05D003060 ORTHO05D001716 7.6e-15 85.5 115 39.1
PGR031G3073 Punica granatum HOM05D003060 ORTHO05D001716 9.9e-15 85.1 115 41.7
Rhsim07G0186300 Rhododendron simsii HOM05D003060 ORTHO05D001716 9.9e-15 85.1 115 38.3
Sed0012843 Sechium edule HOM05D003060 ORTHO05D001716 9.9e-15 85.1 188 35.6
PGSC0003DMG401024702 Solanum tuberosum HOM05D003060 ORTHO05D001716 9.9e-15 85.1 114 41.2
Cc00_g10560 Coffea canephora HOM05D003060 ORTHO05D001716 1.3e-14 84.7 113 34.5
ECA132G0003 Erigeron canadensis HOM05D003060 ORTHO05D001716 1.3e-14 84.7 181 33.1
TPR.G33216 Trifolium pratense HOM05D003060 ORTHO05D001716 1.3e-14 84.7 117 40.2
vmacro04969 Vaccinium macrocarpon HOM05D003060 ORTHO05D001716 1.3e-14 84.7 126 37.3
Aa31LG11G9390 Aethionema arabicum HOM05D003060 ORTHO05D001716 2.2e-14 84.0 103 43.7
Peaxi162Scf00037g00924 Petunia axillaris HOM05D003060 ORTHO05D001716 2.2e-14 84.0 115 41.7
CAN.G1652.16 Capsicum annuum HOM05D003060 ORTHO05D001716 2.9e-14 83.6 114 39.5
Oeu010912.1 Olea europaea HOM05D003060 ORTHO05D001716 2.9e-14 83.6 112 42.9
Potri.013G018700 Populus trichocarpa HOM05D003060 ORTHO05D001716 2.9e-14 83.6 184 33.7
AL3G15990 Arabidopsis lyrata HOM05D003060 ORTHO05D001716 3.8e-14 83.2 119 37.0
Sed0010373 Sechium edule HOM05D003060 ORTHO05D001716 3.8e-14 83.2 183 32.8
PGSC0003DMG400022663 Solanum tuberosum HOM05D003060 ORTHO05D001716 3.8e-14 83.2 146 31.5
Glyma.19G234300 Glycine max HOM05D003060 ORTHO05D001716 4.9e-14 82.8 113 39.8
unitig_899.g15592 Utricularia gibba HOM05D003060 ORTHO05D001716 4.9e-14 82.8 115 40.9
QL03p012691 Quercus lobata HOM05D003060 ORTHO05D001716 6.4e-14 82.4 111 41.4
Ca_05807_v3 Cicer arietinum L. HOM05D003060 ORTHO05D001716 8.4e-14 82.0 118 40.7
Nitab4.5_0003972g0020 Nicotiana tabacum HOM05D003060 ORTHO05D001716 8.4e-14 82.0 129 34.9
Psat0s545g0040 Pisum sativum HOM05D003060 ORTHO05D001716 8.4e-14 82.0 117 39.3
Solyc01g067040.2 Solanum lycopersicum HOM05D003060 ORTHO05D001716 8.4e-14 82.0 121 35.5
Solyc01g099360.3 Solanum lycopersicum HOM05D003060 ORTHO05D001716 8.4e-14 82.0 110 40.9
Sopen01g042920 Solanum pennellii HOM05D003060 ORTHO05D001716 8.4e-14 82.0 110 40.9
VMungo0540G0889 Vigna mungo HOM05D003060 ORTHO05D001716 8.4e-14 82.0 115 38.3
HPP92_016933 Vanilla planifolia HOM05D003060 ORTHO05D001716 1.1e-13 81.6 148 33.1
Lalb_Chr15g0077301 Lupinus albus HOM05D003060 ORTHO05D001716 1.4e-13 81.3 113 38.1
Potri.008G209900 Populus trichocarpa HOM05D003060 ORTHO05D001716 1.4e-13 81.3 107 39.3
Sopen01g028750 Solanum pennellii HOM05D003060 ORTHO05D001716 1.4e-13 81.3 119 35.3
TWI12G1080 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 1.4e-13 81.3 113 38.9
FAN02G1847 Fragaria x ananassa HOM05D003060 ORTHO05D001716 1.9e-13 80.9 115 39.1
FAN05G5493 Fragaria x ananassa HOM05D003060 ORTHO05D001716 1.9e-13 80.9 115 39.1
MSTRG.20426 Avicennia marina HOM05D003060 ORTHO05D001716 2.5e-13 80.5 115 39.1
MSTRG.27986 Avicennia marina HOM05D003060 ORTHO05D001716 2.5e-13 80.5 117 41.0
Cc00_g10500 Coffea canephora HOM05D003060 ORTHO05D001716 2.5e-13 80.5 115 41.7
Peaxi162Scf00534g00015 Petunia axillaris HOM05D003060 ORTHO05D001716 3.2e-13 80.1 108 37.0
SalBow3G3371 Salvia bowleyana HOM05D003060 ORTHO05D001716 3.2e-13 80.1 165 34.5
Glyma.10G152700 Glycine max HOM05D003060 ORTHO05D001716 4.2e-13 79.7 119 38.7
Sabra05G0032100 Salix brachista HOM05D003060 ORTHO05D001716 4.2e-13 79.7 115 39.1
CSS0041177 Camellia sinensis var. sinensis HOM05D003060 ORTHO05D001716 5.5e-13 79.3 117 39.3
CAN.G820.4 Capsicum annuum HOM05D003060 ORTHO05D001716 5.5e-13 79.3 108 40.7
Oeu012112.1 Olea europaea HOM05D003060 ORTHO05D001716 5.5e-13 79.3 110 40.9
Haze_01221 Corylus avellana HOM05D003060 ORTHO05D001716 7.1e-13 79.0 117 39.3
FAN09G4310 Fragaria x ananassa HOM05D003060 ORTHO05D001716 7.1e-13 79.0 115 38.3
unitig_746.g26861 Utricularia gibba HOM05D003060 ORTHO05D001716 7.1e-13 79.0 115 40.0
FvH4_6g06310 Fragaria vesca HOM05D003060 ORTHO05D001716 9.3e-13 78.6 115 38.3
FAN14G2973 Fragaria x ananassa HOM05D003060 ORTHO05D001716 9.3e-13 78.6 115 38.3
SGA_v2.0_scaffold98G29313 Striga asiatica HOM05D003060 ORTHO05D001716 9.3e-13 78.6 115 40.9
TWI09G0082 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 9.3e-13 78.6 167 34.1
AT3G05430 Arabidopsis thaliana HOM05D003060 ORTHO05D001716 1.2e-12 78.2 118 33.9
Lsat_1_v5_gn_9_87360 Lactuca sativa HOM05D003060 ORTHO05D001716 1.2e-12 78.2 111 36.9
Lj1g0012568 Lotus japonicus HOM05D003060 ORTHO05D001716 1.2e-12 78.2 115 36.5
SGA_v2.0_scaffold80G25802 Striga asiatica HOM05D003060 ORTHO05D001716 1.2e-12 78.2 115 39.1
CANSAT54G0820 Cannabis sativa HOM05D003060 ORTHO05D001716 2.1e-12 77.4 115 38.3
Aa31LG5G15950 Aethionema arabicum HOM05D003060 ORTHO05D001716 2.7e-12 77.0 118 36.4
Carub.0003s0471 Capsella rubella HOM05D003060 ORTHO05D001716 2.7e-12 77.0 109 35.8
Lsat_1_v5_gn_3_100041 Lactuca sativa HOM05D003060 ORTHO05D001716 2.7e-12 77.0 109 42.2
PSO782G3873 Papaver somniferum HOM05D003060 ORTHO05D001716 2.7e-12 77.0 136 32.4
Glyma.20G235700 Glycine max HOM05D003060 ORTHO05D001716 3.5e-12 76.6 115 38.3
Lsat_1_v5_gn_8_142521 Lactuca sativa HOM05D002100 ORTHO05D002310 3.5e-12 76.6 131 34.4
SalBow7G2475 Salvia bowleyana HOM05D003060 ORTHO05D001716 3.5e-12 76.6 115 36.5
QL06p008666 Quercus lobata HOM05D003060 ORTHO05D001716 6.0e-12 75.9 117 36.8
SEGI_28746 Sequoiadendron giganteum HOM05D003060 ORTHO05D001716 1.0e-11 75.1 111 35.1
PSO063G5713 Papaver somniferum HOM05D003060 ORTHO05D001716 1.3e-11 74.7 136 30.9
RcHm_v2.0_Chr3g0455351 Rosa chinensis HOM05D003060 ORTHO05D001716 1.3e-11 74.7 112 39.3
SGA_v2.0_scaffold80G25797 Striga asiatica HOM05D003060 ORTHO05D001716 1.3e-11 74.7 115 38.3
HanXRQChr14g0433331 Helianthus annuus HOM05D003060 ORTHO05D001716 2.3e-11 73.9 116 36.2
Lj9A123G17 Lonicera japonica HOM05D003060 ORTHO05D001716 6.7e-11 72.4 98 40.8
Zm00001eb418070 Zea mays HOM05D003060 ORTHO05D001716 1.5e-10 71.2 118 35.6
unitig_749.g13558 Utricularia gibba HOM05D003060 ORTHO05D001716 2.5e-10 70.5 109 37.6
Migut.N00095 Erythranthe guttata HOM05D003060 ORTHO05D001716 5.6e-10 69.3 105 35.2
Actinidia24646 Actinidia chinensis HOM05D003060 ORTHO05D001716 7.4e-10 68.9 71 42.3
Zm00001eb354250 Zea mays HOM05D003060 ORTHO05D001716 9.6e-10 68.6 126 34.1
DCAR_001941 Daucus carota HOM05D003060 ORTHO05D001716 4.8e-09 66.2 140 31.4
Psat6g150120 Pisum sativum HOM05D003060 ORTHO05D001716 1.8e-08 64.3 118 33.9
Atru.chr1.1340 Acer truncatum HOM05D003060 ORTHO05D001716 6.9e-08 62.4 96 36.5
Lj5g0001145 Lotus japonicus HOM05D003060 ORTHO05D001716 3.4e-07 60.1 109 31.2


User provided reference genes

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