Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 1.3e-44 182.6 84 100.0
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 4.1e-43 177.6 86 97.7
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 4.1e-43 177.6 86 97.7
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 4.1e-43 177.6 86 97.7
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 8.0e-39 163.3 80 93.8
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 2.3e-38 161.8 85 88.2
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 3.0e-38 161.4 82 90.2
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 5.2e-38 160.6 84 90.5
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 5.2e-38 160.6 80 92.5
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 8.9e-38 159.8 84 90.5
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 8.9e-38 159.8 84 89.3
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 8.9e-38 159.8 82 86.6
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 1.2e-37 159.5 77 96.1
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 2.0e-37 158.7 83 89.2
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 2.0e-37 158.7 83 89.2
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 2.0e-37 158.7 84 86.9
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 2.6e-37 158.3 82 90.2
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 3.4e-37 157.9 82 86.6
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 5.7e-37 157.1 84 86.9
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 5.7e-37 157.1 84 86.9
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 5.7e-37 157.1 85 85.9
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 5.7e-37 157.1 85 85.9
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 5.7e-37 157.1 83 88.0
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 7.5e-37 156.8 84 86.9
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 7.5e-37 156.8 80 91.2
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 9.8e-37 156.4 83 85.5
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 9.8e-37 156.4 84 86.9
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 9.8e-37 156.4 83 88.0
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 1.3e-36 156.0 83 85.5
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 1.7e-36 155.6 83 86.7
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 1.7e-36 155.6 76 93.4
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 1.7e-36 155.6 76 90.8
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 1.7e-36 155.6 84 85.7
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 2.2e-36 155.2 83 85.5
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 2.9e-36 154.8 73 94.5
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 3.7e-36 154.5 83 85.5
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 3.7e-36 154.5 83 85.5
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 3.7e-36 154.5 83 85.5
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 4.9e-36 154.1 83 85.5
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 4.9e-36 154.1 83 85.5
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 4.9e-36 154.1 83 85.5
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 4.9e-36 154.1 83 85.5
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 4.9e-36 154.1 83 85.5
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 6.4e-36 153.7 86 83.7
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 6.4e-36 153.7 77 90.9
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 8.3e-36 153.3 76 90.8
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 8.3e-36 153.3 84 84.5
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 8.3e-36 153.3 83 85.5
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 8.3e-36 153.3 80 88.8
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 1.4e-35 152.5 84 83.3
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 1.4e-35 152.5 75 92.0
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.4e-35 152.5 75 92.0
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.4e-35 152.5 75 92.0
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.4e-35 152.5 75 92.0
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 1.4e-35 152.5 83 85.5
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 1.4e-35 152.5 83 84.3
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 1.8e-35 152.1 82 82.9
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 1.8e-35 152.1 86 82.6
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.8e-35 152.1 83 84.3
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.8e-35 152.1 83 84.3
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.8e-35 152.1 83 84.3
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 1.8e-35 152.1 83 83.1
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 1.8e-35 152.1 80 87.5
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 2.4e-35 151.8 85 85.9
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 2.4e-35 151.8 75 90.7
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 3.2e-35 151.4 83 83.1
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 3.2e-35 151.4 83 83.1
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 3.2e-35 151.4 83 84.3
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 3.2e-35 151.4 83 84.3
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 4.1e-35 151.0 83 84.3
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 5.4e-35 150.6 84 82.1
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 5.4e-35 150.6 86 84.9
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 5.4e-35 150.6 83 81.9
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 7.0e-35 150.2 83 83.1
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 7.0e-35 150.2 84 84.5
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 7.0e-35 150.2 86 83.7
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 9.2e-35 149.8 83 83.1
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 9.2e-35 149.8 83 83.1
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 1.2e-34 149.4 86 83.7
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 1.2e-34 149.4 88 80.7
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 1.6e-34 149.1 79 86.1
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 1.6e-34 149.1 84 82.1
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 1.6e-34 149.1 84 82.1
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 1.6e-34 149.1 84 82.1
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 1.6e-34 149.1 78 87.2
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 1.6e-34 149.1 84 82.1
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 1.6e-34 149.1 84 82.1
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 1.6e-34 149.1 71 94.4
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 1.6e-34 149.1 83 80.7
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 1.6e-34 149.1 76 86.8
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 1.6e-34 149.1 84 82.1
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 1.6e-34 149.1 82 81.7
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 2.0e-34 148.7 84 82.1
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 2.0e-34 148.7 84 82.1
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 2.0e-34 148.7 73 90.4
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 2.0e-34 148.7 75 88.0
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 2.0e-34 148.7 75 88.0
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 2.0e-34 148.7 83 81.9
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 2.7e-34 148.3 84 82.1
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 2.7e-34 148.3 84 82.1
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 2.7e-34 148.3 84 82.1
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 2.7e-34 148.3 71 93.0
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 3.5e-34 147.9 84 81.0
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 3.5e-34 147.9 83 81.9
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 4.6e-34 147.5 83 81.9
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 4.6e-34 147.5 83 80.7
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 4.6e-34 147.5 84 82.1
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 5.9e-34 147.1 75 86.7
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 7.8e-34 146.7 73 90.4
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 7.8e-34 146.7 73 90.4
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 7.8e-34 146.7 73 90.4
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 7.8e-34 146.7 86 81.4
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 1.0e-33 146.4 84 79.8
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 1.3e-33 146.0 78 87.2
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 3.0e-33 144.8 83 79.5
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 3.9e-33 144.4 75 85.3
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 6.6e-33 143.7 104 70.2
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 2.5e-32 141.7 65 95.4
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 7.3e-32 140.2 71 85.9
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 1.2e-31 139.4 104 67.3
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 8.0e-31 136.7 63 95.2
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 1.8e-30 135.6 61 96.7
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 2.3e-30 135.2 97 68.0
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 3.1e-30 134.8 62 95.2
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 3.1e-30 134.8 62 95.2
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 8.9e-30 133.3 61 95.1
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 1.5e-29 132.5 60 95.0
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 1.7e-28 129.0 71 80.3
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 6.4e-28 127.1 57 96.5
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 4.6e-26 120.9 64 87.5
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 1.9e-24 115.5 50 98.0
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 3.3e-24 114.8 50 98.0
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 3.3e-24 114.8 50 96.0
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 1.2e-23 112.8 50 96.0
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 1.5e-21 105.9 76 63.2
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 2.0e-21 105.5 49 89.8
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 2.6e-21 105.1 84 61.9
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 8.3e-20 100.1 73 64.4
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 5.4e-19 97.4 85 56.5
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 7.1e-19 97.1 82 54.9
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 2.1e-18 95.5 59 76.3
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 2.6e-13 78.6 75 49.3
arahy.Tifrunner.gnm1.ann1.YEW5FF Arachis hypogaea HOM05D005224 ORTHO05D006372 2.1e-07 58.9 29 86.2
AUR62015428 Chenopodium quinoa HOM05D005224 ORTHO05D006372 4.0e-06 54.7 23 91.3


User provided reference genes

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