Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0538531 Helianthus annuus HOM05D003254 ORTHO05D003713 4.1e-43 177.6 84 100.0
HanXRQChr08g0208181 Helianthus annuus HOM05D003254 ORTHO05D003713 2.9e-20 101.7 50 96.0
Nitab4.5_0003609g0020 Nicotiana tabacum HOM05D003254 ORTHO05D003713 4.9e-20 100.9 50 94.0
CiPaw.05G182400 Carya illinoinensis HOM05D003254 ORTHO05D003713 6.4e-20 100.5 54 85.2
Potri.010G046300 Populus trichocarpa HOM05D003254 ORTHO05D003713 6.4e-20 100.5 54 85.2
Rhsim12G0110200 Rhododendron simsii HOM05D003254 ORTHO05D003713 6.4e-20 100.5 54 83.3
PGR119G0064 Punica granatum HOM05D003254 ORTHO05D003713 8.3e-20 100.1 50 92.0
vmacro16195 Vaccinium macrocarpon HOM05D003254 ORTHO05D003713 1.4e-19 99.4 54 83.3
Ciclev10031076m.g Citrus clementina HOM05D003254 ORTHO05D003713 1.9e-19 99.0 54 87.0
Nitab4.5_0010104g0010 Nicotiana tabacum HOM05D003254 ORTHO05D003713 1.9e-19 99.0 50 90.0
PGR102G1504 Punica granatum HOM05D003254 ORTHO05D003713 1.9e-19 99.0 54 83.3
COL.COLO4_24275 Corchorus olitorius HOM05D003254 ORTHO05D003713 2.4e-19 98.6 54 85.2
ECA233G5985 Erigeron canadensis HOM05D003254 ORTHO05D003713 2.4e-19 98.6 50 90.0
Oeu038630.2 Olea europaea HOM05D003254 ORTHO05D003713 2.4e-19 98.6 54 81.5
Sabra10G0022500 Salix brachista HOM05D003254 ORTHO05D003713 2.4e-19 98.6 54 81.5
Atru.chr11.2096 Acer truncatum HOM05D003254 ORTHO05D003713 3.2e-19 98.2 50 90.0
Manes.12G023200 Manihot esculenta HOM05D003254 ORTHO05D003713 3.2e-19 98.2 54 85.2
Thecc.02G259900 Theobroma cacao HOM05D003254 ORTHO05D003713 3.2e-19 98.2 54 83.3
Nitab4.5_0000007g0040 Nicotiana tabacum HOM05D003254 ORTHO05D003713 4.1e-19 97.8 50 92.0
Peaxi162Scf00076g00027 Petunia axillaris HOM05D003254 ORTHO05D003713 4.1e-19 97.8 50 88.0
Cc11_g15740 Coffea canephora HOM05D003254 ORTHO05D003713 5.4e-19 97.4 54 83.3
Oeu056711.1 Olea europaea HOM05D003254 ORTHO05D003713 5.4e-19 97.4 50 90.0
Peaxi162Scf00128g00139 Petunia axillaris HOM05D003254 ORTHO05D003713 5.4e-19 97.4 55 81.8
Cpa.g.sc33.20 Carica papaya HOM05D003254 ORTHO05D003713 7.1e-19 97.1 50 90.0
MD16G1102200 Malus domestica HOM05D003254 ORTHO05D003713 7.1e-19 97.1 54 83.3
Aa31LG2G5970 Aethionema arabicum HOM05D003254 ORTHO05D003713 9.2e-19 96.7 54 81.5
Nn4g22620 Nelumbo nucifera HOM05D003254 ORTHO05D003713 9.2e-19 96.7 54 83.3
Potri.008G186601 Populus trichocarpa HOM05D003254 ORTHO05D003713 9.2e-19 96.7 54 81.5
TAR622G1180 Trochodendron aralioides HOM05D003254 ORTHO05D003713 9.2e-19 96.7 50 90.0
Duzib248G0244 Durio zibethinus HOM05D003254 ORTHO05D003713 1.2e-18 96.3 54 83.3
Duzib251G0314 Durio zibethinus HOM05D003254 ORTHO05D003713 1.2e-18 96.3 54 81.5
Migut.K00598 Erythranthe guttata HOM05D003254 ORTHO05D003713 1.2e-18 96.3 50 88.0
Eucgr.H02499 Eucalyptus grandis HOM05D003254 ORTHO05D003713 1.2e-18 96.3 54 77.8
PSO017G4818 Papaver somniferum HOM05D003254 ORTHO05D003713 1.2e-18 96.3 50 88.0
AT3G26570 Arabidopsis thaliana HOM05D003254 ORTHO05D003713 1.6e-18 95.9 54 83.3
Cfa009211 Carpinus fangiana HOM05D003254 ORTHO05D003713 1.6e-18 95.9 54 81.5
MSTRG.566 Avicennia marina HOM05D003254 ORTHO05D003713 2.1e-18 95.5 54 79.6
CANSAT01G2197 Cannabis sativa HOM05D003254 ORTHO05D003713 2.1e-18 95.5 50 88.0
Lj6A812T47 Lonicera japonica HOM05D003254 ORTHO05D003713 2.1e-18 95.5 50 86.0
GSVIVG01005753001 Vitis vinifera HOM05D003254 ORTHO05D003713 2.1e-18 95.5 54 81.5
AL5G15360 Arabidopsis lyrata HOM05D003254 ORTHO05D003713 2.7e-18 95.1 54 81.5
Carub.0005s0456 Capsella rubella HOM05D003254 ORTHO05D003713 2.7e-18 95.1 54 81.5
BcaC06g31064 Brassica carinata HOM05D003254 ORTHO05D003713 3.5e-18 94.7 54 79.6
BcaC06g33902 Brassica carinata HOM05D003254 ORTHO05D003713 3.5e-18 94.7 54 79.6
A06p41920 Brassica napus HOM05D003254 ORTHO05D003713 3.5e-18 94.7 54 79.6
C07p35550 Brassica napus HOM05D003254 ORTHO05D003713 3.5e-18 94.7 54 79.6
BolC7t44079H Brassica oleracea HOM05D003254 ORTHO05D003713 3.5e-18 94.7 54 79.6
BraA06t27111Z Brassica rapa HOM05D003254 ORTHO05D003713 3.5e-18 94.7 54 79.6
Thhalv10003891m.g Eutrema salsugineum HOM05D003254 ORTHO05D003713 3.5e-18 94.7 54 79.6
PSO478G3818 Papaver somniferum HOM05D003254 ORTHO05D003713 3.5e-18 94.7 50 86.0
SalBow2G2862 Salvia bowleyana HOM05D003254 ORTHO05D003713 3.5e-18 94.7 50 86.0
THA.LOC104825663 Tarenaya hassleriana HOM05D003254 ORTHO05D003713 3.5e-18 94.7 54 79.6
MSTRG.7932 Avicennia marina HOM05D003254 ORTHO05D003713 4.6e-18 94.4 57 77.2
CARHR147580 Cardamine hirsuta HOM05D003254 ORTHO05D003713 4.6e-18 94.4 54 79.6
FvH4_4g25560 Fragaria vesca HOM05D003254 ORTHO05D003713 4.6e-18 94.4 54 81.5
FAN07G0157 Fragaria x ananassa HOM05D003254 ORTHO05D003713 4.6e-18 94.4 54 81.5
FAN12G0137 Fragaria x ananassa HOM05D003254 ORTHO05D003713 4.6e-18 94.4 54 81.5
FAN17G2214 Fragaria x ananassa HOM05D003254 ORTHO05D003713 4.6e-18 94.4 54 81.5
FAN22G1441 Fragaria x ananassa HOM05D003254 ORTHO05D003713 4.6e-18 94.4 54 81.5
RcHm_v2.0_Chr4g0432971 Rosa chinensis HOM05D003254 ORTHO05D003713 4.6e-18 94.4 54 81.5
Sp2g15680 Schrenkiella parvula HOM05D003254 ORTHO05D003713 4.6e-18 94.4 54 79.6
TWI18G1442 Tripterygium wilfordii HOM05D003254 ORTHO05D003713 4.6e-18 94.4 50 86.0
Gohir.D02G158800 Gossypium hirsutum HOM05D003254 ORTHO05D003713 6.0e-18 94.0 54 79.6
Gorai.005G178500 Gossypium raimondii HOM05D003254 ORTHO05D003713 6.0e-18 94.0 54 79.6
MD13G1101400 Malus domestica HOM05D003254 ORTHO05D003713 6.0e-18 94.0 54 81.5
Prupe.1G244400 Prunus persica HOM05D003254 ORTHO05D003713 6.0e-18 94.0 54 79.6
QL03p058091 Quercus lobata HOM05D003254 ORTHO05D003713 6.0e-18 94.0 54 81.5
Actinidia15096 Actinidia chinensis HOM05D003254 ORTHO05D003713 7.8e-18 93.6 54 81.5
CSS0004236 Camellia sinensis var. sinensis HOM05D003254 ORTHO05D003713 7.8e-18 93.6 50 86.0
ClCG05G025750 Citrullus lanatus HOM05D003254 ORTHO05D003713 7.8e-18 93.6 54 77.8
MELO3C011950.2 Cucumis melo HOM05D003254 ORTHO05D003713 7.8e-18 93.6 54 77.8
CsaV3_5G031110 Cucumis sativus L. HOM05D003254 ORTHO05D003713 7.8e-18 93.6 54 77.8
Dinv24783 Davidia involucrata HOM05D003254 ORTHO05D003713 7.8e-18 93.6 54 81.5
PSO017G3346 Papaver somniferum HOM05D003254 ORTHO05D003713 7.8e-18 93.6 50 84.0
PSO478G2352 Papaver somniferum HOM05D003254 ORTHO05D003713 7.8e-18 93.6 50 84.0
HPP92_004613 Vanilla planifolia HOM05D003254 ORTHO05D003713 7.8e-18 93.6 53 77.4
Gohir.A03G135300 Gossypium hirsutum HOM05D003254 ORTHO05D003713 1.0e-17 93.2 54 77.8
Aqoxy3G01213 Aquilegia oxysepala HOM05D003254 ORTHO05D003713 1.3e-17 92.8 50 86.0
BcaC04g23931 Brassica carinata HOM05D003254 ORTHO05D003713 1.3e-17 92.8 54 77.8
A09p03090 Brassica napus HOM05D003254 ORTHO05D003713 1.3e-17 92.8 54 77.8
C09p03240 Brassica napus HOM05D003254 ORTHO05D003713 1.3e-17 92.8 54 77.8
BolC9t53249H Brassica oleracea HOM05D003254 ORTHO05D003713 1.3e-17 92.8 54 77.8
BraA09t35947Z Brassica rapa HOM05D003254 ORTHO05D003713 1.3e-17 92.8 54 77.8
Sed0007009 Sechium edule HOM05D003254 ORTHO05D003713 1.3e-17 92.8 54 75.9
unitig_747.g21153 Utricularia gibba HOM05D003254 ORTHO05D003713 1.3e-17 92.8 58 75.9
CSS0025345 Camellia sinensis var. sinensis HOM05D003254 ORTHO05D003713 1.7e-17 92.4 54 75.9
MBI10_g03714_MAGBIO Magnolia biondii HOM05D003254 ORTHO05D003713 1.7e-17 92.4 50 82.0
TAR374G0119 Trochodendron aralioides HOM05D003254 ORTHO05D003713 1.7e-17 92.4 50 84.0
HPP92_004619 Vanilla planifolia HOM05D003254 ORTHO05D003713 1.7e-17 92.4 50 82.0
Hma1.2p1_0223F.1_g093940 Hydrangea macrophylla HOM05D003254 ORTHO05D003713 2.3e-17 92.0 50 88.0
SGA_v2.0_scaffold476G52135 Striga asiatica HOM05D003254 ORTHO05D003713 2.3e-17 92.0 54 77.8
AUR62005463 Chenopodium quinoa HOM05D003254 ORTHO05D003713 3.0e-17 91.7 50 84.0
AUR62024277 Chenopodium quinoa HOM05D003254 ORTHO05D003713 3.0e-17 91.7 50 84.0
Eucgr.B03285 Eucalyptus grandis HOM05D003254 ORTHO05D003713 3.0e-17 91.7 54 74.1
TWI36G1175 Tripterygium wilfordii HOM05D003254 ORTHO05D003713 3.9e-17 91.3 50 84.0
ATR0824G202 Amborella trichopoda HOM05D003254 ORTHO05D003713 5.1e-17 90.9 50 84.0
Lsat_1_v5_gn_8_152120 Lactuca sativa HOM05D003254 ORTHO05D003713 5.1e-17 90.9 50 86.0
Solyc05g013510.4 Solanum lycopersicum HOM05D003254 ORTHO05D003713 5.1e-17 90.9 54 81.5
Sopen05g008390 Solanum pennellii HOM05D003254 ORTHO05D003713 5.1e-17 90.9 54 81.5
PGSC0003DMG400018604 Solanum tuberosum HOM05D003254 ORTHO05D003713 5.1e-17 90.9 54 81.5
Ca_22585_v3 Cicer arietinum L. HOM05D003254 ORTHO05D003713 6.6e-17 90.5 49 83.7
Medtr8g069390 Medicago truncatula HOM05D003254 ORTHO05D003713 6.6e-17 90.5 49 83.7
TPR.G17752 Trifolium pratense HOM05D003254 ORTHO05D003713 6.6e-17 90.5 49 83.7
Ah.03g133020 Amaranthus hybridus HOM05D003254 ORTHO05D003713 8.6e-17 90.1 50 82.0
arahy.Tifrunner.gnm1.ann1.9P3HYP Arachis hypogaea HOM05D003254 ORTHO05D003713 1.1e-16 89.7 50 80.0
arahy.Tifrunner.gnm1.ann1.E5Z9NB Arachis hypogaea HOM05D003254 ORTHO05D003713 1.1e-16 89.7 50 80.0
CDE04G2624 Ceratophyllum demersum HOM05D003254 ORTHO05D003713 1.1e-16 89.7 50 84.0
CDE07G1933 Ceratophyllum demersum HOM05D003254 ORTHO05D003713 1.1e-16 89.7 50 84.0
Phvul.003G064900 Phaseolus vulgaris HOM05D003254 ORTHO05D003713 1.1e-16 89.7 50 78.0
Lalb_Chr05g0216571 Lupinus albus HOM05D003254 ORTHO05D003713 1.5e-16 89.4 50 80.0
Sc04g0009480 Simmondsia chinensis HOM05D003254 ORTHO05D003713 1.5e-16 89.4 50 80.0
EL10Ac6g13808 Beta vulgaris HOM05D003254 ORTHO05D003713 1.9e-16 89.0 50 78.0
Glyma.08G282100 Glycine max HOM05D003254 ORTHO05D003713 1.9e-16 89.0 49 79.6
Glyma.18G144100 Glycine max HOM05D003254 ORTHO05D003713 1.9e-16 89.0 49 79.6
Pp3c9_7350 Physcomitrium patens HOM05D003254 ORTHO05D003713 1.9e-16 89.0 54 70.4
Lalb_Chr16g0381901 Lupinus albus HOM05D003254 ORTHO05D003713 2.5e-16 88.6 50 80.0
AagrBONN_evm.TU.Sc2ySwM_368.1920 Anthoceros agrestis HOM05D003254 ORTHO05D003713 4.3e-16 87.8 50 76.0
DCAR_026513 Daucus carota HOM05D003254 ORTHO05D003713 4.3e-16 87.8 49 83.7
Lj2g0004909 Lotus japonicus HOM05D003254 ORTHO05D003713 4.3e-16 87.8 50 78.0
VMungo0251G2727 Vigna mungo HOM05D003254 ORTHO05D003713 4.3e-16 87.8 49 77.6
Zm00001eb245920 Zea mays HOM05D003254 ORTHO05D003713 4.3e-16 87.8 50 82.0
Os02g0593500 Oryza sativa ssp. japonica HOM05D003254 ORTHO05D003713 1.6e-15 85.9 50 78.0
SMO118G0341 Selaginella moellendorffii HOM05D003254 ORTHO05D003713 1.6e-15 85.9 50 78.0
Lj4g0008501 Lotus japonicus HOM05D003254 ORTHO05D003713 2.8e-15 85.1 50 78.0
Psat4g115400 Pisum sativum HOM05D003254 ORTHO05D003713 2.8e-15 85.1 50 78.0
SEGI_27895 Sequoiadendron giganteum HOM05D003254 ORTHO05D003713 3.6e-15 84.7 50 78.0
Mapoly0138s0013 Marchantia polymorpha HOM05D003254 ORTHO05D003713 4.7e-15 84.3 50 72.0
CBR_g9141 Chara braunii HOM05D003254 ORTHO05D003713 1.8e-14 82.4 49 73.5
SEGI_17608 Sequoiadendron giganteum HOM05D003254 ORTHO05D003713 3.1e-14 81.6 50 78.0
Nitab4.5_0000370g0100 Nicotiana tabacum HOM05D003254 ORTHO05D003713 1.5e-13 79.3 42 85.7
CAN.G832.1 Capsicum annuum HOM05D003254 ORTHO05D003713 4.9e-12 74.3 54 72.2
ATR0730G048 Amborella trichopoda HOM05D003254 ORTHO05D003713 5.1e-09 64.3 64 53.1
Hma1.2p1_0223F.1_g093950 Hydrangea macrophylla HOM05D003254 ORTHO05D003713 6.2e-07 57.4 32 84.4
Cre12.g491600 Chlamydomonas reinhardtii HOM05D003254 ORTHO05D003713 9.0e-06 53.5 62 41.9


User provided reference genes

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