Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0538311 Helianthus annuus HOM05D000380 ORTHO05D010349 4.6e-29 130.6 67 100.0
HanXRQChr17g0538291 Helianthus annuus HOM05D000380 ORTHO05D000561 2.3e-12 75.1 40 92.5
Nn3g19425 Nelumbo nucifera HOM05D000380 ORTHO05D000561 5.6e-11 70.5 49 71.4
Lsat_1_v5_gn_3_18921 Lactuca sativa HOM05D000380 ORTHO05D000561 4.8e-10 67.4 37 83.8
ECA246G2076 Erigeron canadensis HOM05D000380 ORTHO05D000561 1.4e-09 65.9 37 83.8
TAR374G0483 Trochodendron aralioides HOM05D000380 ORTHO05D000561 1.4e-09 65.9 59 62.7
HanXRQChr06g0167671 Helianthus annuus HOM05D000380 ORTHO05D000561 1.8e-09 65.5 37 81.1
Gohir.D08G175600 Gossypium hirsutum HOM05D000380 ORTHO05D000561 2.4e-09 65.1 59 62.7
Gorai.004G183400 Gossypium raimondii HOM05D000380 ORTHO05D000561 2.4e-09 65.1 59 62.7
Nn4g24446 Nelumbo nucifera HOM05D000380 ORTHO05D000561 3.1e-09 64.7 64 57.8
TAR375G0776 Trochodendron aralioides HOM05D000380 ORTHO05D000561 3.1e-09 64.7 59 62.7
Thecc.03G306600 Theobroma cacao HOM05D000380 ORTHO05D000561 4.0e-09 64.3 59 62.7
COL.COLO4_16975 Corchorus olitorius HOM05D000380 ORTHO05D000561 5.3e-09 63.9 66 57.6
Gohir.A11G031600 Gossypium hirsutum HOM05D000380 ORTHO05D000561 6.9e-09 63.5 56 64.3
Gohir.D11G030300 Gossypium hirsutum HOM05D000380 ORTHO05D000561 6.9e-09 63.5 56 64.3
Gorai.007G033200 Gossypium raimondii HOM05D000380 ORTHO05D000561 6.9e-09 63.5 56 64.3
PSO063G3139 Papaver somniferum HOM05D000380 ORTHO05D000561 6.9e-09 63.5 59 61.0
Aqoxy3G02239 Aquilegia oxysepala HOM05D000380 ORTHO05D000561 9.0e-09 63.2 53 64.2
Nn1g00176 Nelumbo nucifera HOM05D000380 ORTHO05D000561 1.5e-08 62.4 59 59.3
Rhsim07G0130000 Rhododendron simsii HOM05D000380 ORTHO05D000561 1.5e-08 62.4 59 61.0
DCAR_032086 Daucus carota HOM05D000380 ORTHO05D010349 2.0e-08 62.0 59 59.3
Hund11220 Selenicereus undatus HOM05D000380 ORTHO05D000561 2.6e-08 61.6 53 66.0
PSO478G3697 Papaver somniferum HOM05D000380 ORTHO05D000561 3.4e-08 61.2 53 64.2
GSVIVG01013122001 Vitis vinifera HOM05D000380 ORTHO05D010349 3.4e-08 61.2 59 61.0
CSS0046135 Camellia sinensis var. sinensis HOM05D000380 ORTHO05D000561 4.5e-08 60.8 59 59.3
Ciclev10000247m.g Citrus clementina HOM05D000380 ORTHO05D000561 4.5e-08 60.8 53 66.0
Duzib248G1369 Durio zibethinus HOM05D000380 ORTHO05D000561 4.5e-08 60.8 53 64.2
PSO017G1638 Papaver somniferum HOM05D000380 ORTHO05D000561 4.5e-08 60.8 53 62.3
vmacro14186 Vaccinium macrocarpon HOM05D000380 ORTHO05D010349 4.5e-08 60.8 59 59.3
ATR0829G073 Amborella trichopoda HOM05D000380 ORTHO05D000561 5.8e-08 60.5 53 64.2
Cc08_g03150 Coffea canephora HOM05D000380 ORTHO05D000561 5.8e-08 60.5 54 63.0
Manes.15G182200 Manihot esculenta HOM05D000380 ORTHO05D000561 7.6e-08 60.1 53 66.0
Nitab4.5_0000353g0100 Nicotiana tabacum HOM05D000380 ORTHO05D000561 7.6e-08 60.1 58 60.3
TAR622G1130 Trochodendron aralioides HOM05D000380 ORTHO05D000561 7.6e-08 60.1 53 60.4
MBI13_g24908_MAGBIO Magnolia biondii HOM05D000380 ORTHO05D000561 1.0e-07 59.7 53 60.4
PGSC0003DMG401017546 Solanum tuberosum HOM05D000380 ORTHO05D000561 1.0e-07 59.7 58 58.6
TAR629G0871 Trochodendron aralioides HOM05D000380 ORTHO05D010349 1.0e-07 59.7 53 60.4
EL10Ac5g12059 Beta vulgaris HOM05D000380 ORTHO05D000561 1.3e-07 59.3 53 64.2
Duzib205G1560 Durio zibethinus HOM05D000380 ORTHO05D000561 1.3e-07 59.3 56 60.7
Hma1.2p1_0303F.1_g118830 Hydrangea macrophylla HOM05D000380 ORTHO05D000561 1.3e-07 59.3 59 59.3
Nitab4.5_0002868g0010 Nicotiana tabacum HOM05D000380 ORTHO05D000561 1.3e-07 59.3 58 58.6
Sc07g0008600 Simmondsia chinensis HOM05D000380 ORTHO05D000561 1.3e-07 59.3 37 78.4
Nn3g18411 Nelumbo nucifera HOM05D000380 ORTHO05D000561 1.7e-07 58.9 53 64.2
Peaxi162Scf00170g01223 Petunia axillaris HOM05D000380 ORTHO05D000561 1.7e-07 58.9 58 60.3
Potri.003G094500 Populus trichocarpa HOM05D000380 ORTHO05D000561 1.7e-07 58.9 53 64.2
Thecc.02G308700 Theobroma cacao HOM05D000380 ORTHO05D000561 1.7e-07 58.9 53 62.3
TWI15G0286 Tripterygium wilfordii HOM05D000380 ORTHO05D000561 1.7e-07 58.9 53 66.0
Ah.12g055260 Amaranthus hybridus HOM05D000380 ORTHO05D000561 2.2e-07 58.5 53 62.3
CAN.G298.40 Capsicum annuum HOM05D000380 ORTHO05D000561 2.2e-07 58.5 56 60.7
Solyc08g076650.3 Solanum lycopersicum HOM05D000380 ORTHO05D000561 2.2e-07 58.5 58 58.6
Sopen08g025200 Solanum pennellii HOM05D000380 ORTHO05D000561 2.2e-07 58.5 58 58.6
Aqoxy3G04076 Aquilegia oxysepala HOM05D000380 ORTHO05D000561 2.9e-07 58.2 38 73.7
MD16G1016800 Malus domestica HOM05D000380 ORTHO05D000561 2.9e-07 58.2 38 71.1
Prupe.1G334900 Prunus persica HOM05D000380 ORTHO05D000561 2.9e-07 58.2 53 62.3
SGA_v2.0_scaffold23G10173 Striga asiatica HOM05D000380 ORTHO05D000561 2.9e-07 58.2 53 60.4
Ah.14g084040 Amaranthus hybridus HOM05D000380 ORTHO05D000139 3.8e-07 57.8 52 53.8
CDE06G0916 Ceratophyllum demersum HOM05D000380 ORTHO05D000561 3.8e-07 57.8 50 64.0
Manes.17G085400 Manihot esculenta HOM05D000380 ORTHO05D000561 3.8e-07 57.8 59 55.9
Sabra01G0108600 Salix brachista HOM05D000380 ORTHO05D000561 3.8e-07 57.8 50 66.0
HPP92_024772 Vanilla planifolia HOM05D000380 ORTHO05D000561 3.8e-07 57.8 50 66.0
HPP92_026946 Vanilla planifolia HOM05D000380 ORTHO05D000561 3.8e-07 57.8 37 70.3
CAN.G135.2 Capsicum annuum HOM05D000380 ORTHO05D010349 4.9e-07 57.4 56 58.9
CDE05G2007 Ceratophyllum demersum HOM05D000380 ORTHO05D000561 4.9e-07 57.4 37 70.3
Ciclev10014251m.g Citrus clementina HOM05D000380 ORTHO05D000561 4.9e-07 57.4 54 57.4
Hma1.2p1_0234F.1_g098460 Hydrangea macrophylla HOM05D000380 ORTHO05D000561 4.9e-07 57.4 53 60.4
Lj4g0007903 Lotus japonicus HOM05D000380 ORTHO05D000561 4.9e-07 57.4 58 56.9
Oeu059524.1 Olea europaea HOM05D000380 ORTHO05D000561 4.9e-07 57.4 51 60.8
Oeu062640.1 Olea europaea HOM05D000380 ORTHO05D000561 4.9e-07 57.4 53 60.4
TWI74G1077 Tripterygium wilfordii HOM05D000380 ORTHO05D000561 4.9e-07 57.4 38 68.4
Atru.chr6.1623 Acer truncatum HOM05D000380 ORTHO05D000561 6.5e-07 57.0 59 55.9
Cpa.g.sc90.21 Carica papaya HOM05D000380 ORTHO05D000561 6.5e-07 57.0 59 57.6
Ca_17267_v3 Cicer arietinum L. HOM05D000380 ORTHO05D000561 6.5e-07 57.0 53 60.4
Manes.15G136100 Manihot esculenta HOM05D000380 ORTHO05D000561 6.5e-07 57.0 53 60.4
Peaxi162Scf00275g00085 Petunia axillaris HOM05D000380 ORTHO05D000561 6.5e-07 57.0 59 54.2
CAN.G282.116 Capsicum annuum HOM05D000380 ORTHO05D000561 8.4e-07 56.6 59 54.2
COL.COLO4_27627 Corchorus olitorius HOM05D000380 ORTHO05D000561 8.4e-07 56.6 53 60.4
Migut.E00783 Erythranthe guttata HOM05D000380 ORTHO05D000561 8.4e-07 56.6 58 60.3
FAN17G1238 Fragaria x ananassa HOM05D000380 ORTHO05D000561 8.4e-07 56.6 37 70.3
HanXRQChr16g0527221 Helianthus annuus HOM05D000380 ORTHO05D000561 8.4e-07 56.6 54 63.0
Lalb_Chr05g0222101 Lupinus albus HOM05D000380 ORTHO05D000561 8.4e-07 56.6 54 59.3
AUR62007314 Chenopodium quinoa HOM05D000380 ORTHO05D000561 1.1e-06 56.2 53 62.3
FvH4_4g33380 Fragaria vesca HOM05D000380 ORTHO05D000561 1.1e-06 56.2 37 67.6
FAN12G2530 Fragaria x ananassa HOM05D000380 ORTHO05D000561 1.1e-06 56.2 37 67.6
FAN22G2086 Fragaria x ananassa HOM05D000380 ORTHO05D000561 1.1e-06 56.2 37 67.6
QL03p037550 Quercus lobata HOM05D000380 ORTHO05D000561 1.1e-06 56.2 50 62.0
Solyc01g005210.4 Solanum lycopersicum HOM05D000380 ORTHO05D000561 1.1e-06 56.2 59 52.5
Sopen01g001240 Solanum pennellii HOM05D000380 ORTHO05D000561 1.1e-06 56.2 59 52.5
PGSC0003DMG400022778 Solanum tuberosum HOM05D000380 ORTHO05D000561 1.1e-06 56.2 59 52.5
THA.LOC104807896 Tarenaya hassleriana HOM05D000380 ORTHO05D000561 1.1e-06 56.2 56 57.1
TWI81G0522 Tripterygium wilfordii HOM05D000380 ORTHO05D000561 1.1e-06 56.2 53 62.3
Cfa015044 Carpinus fangiana HOM05D000380 ORTHO05D000561 1.4e-06 55.8 53 58.5
CDE11G0776 Ceratophyllum demersum HOM05D000380 ORTHO05D000561 1.4e-06 55.8 52 57.7
Migut.E00494 Erythranthe guttata HOM05D000380 ORTHO05D000561 1.4e-06 55.8 50 62.0
Potri.010G104500 Populus trichocarpa HOM05D000380 ORTHO05D000561 1.4e-06 55.8 54 59.3
SalBow2G1847 Salvia bowleyana HOM05D000380 ORTHO05D000561 1.4e-06 55.8 53 56.6
MSTRG.2119 Avicennia marina HOM05D000380 ORTHO05D000561 1.9e-06 55.5 53 58.5
CDE06G2766 Ceratophyllum demersum HOM05D000380 ORTHO05D010349 1.9e-06 55.5 50 62.0
Cc11_g06690 Coffea canephora HOM05D000380 ORTHO05D000561 1.9e-06 55.5 50 60.0
Nitab4.5_0000538g0040 Nicotiana tabacum HOM05D000380 ORTHO05D000561 1.9e-06 55.5 59 52.5
Nitab4.5_0001406g0010 Nicotiana tabacum HOM05D000380 ORTHO05D000561 1.9e-06 55.5 59 52.5
PGR042G0818 Punica granatum HOM05D000380 ORTHO05D000561 1.9e-06 55.5 56 58.9
RcHm_v2.0_Chr4g0442641 Rosa chinensis HOM05D000380 ORTHO05D000561 1.9e-06 55.5 37 67.6
EL10Ac8g18858 Beta vulgaris HOM05D000380 ORTHO05D000561 2.5e-06 55.1 47 59.6
AUR62018691 Chenopodium quinoa HOM05D000380 ORTHO05D000561 2.5e-06 55.1 53 62.3
Haze_10855 Corylus avellana HOM05D000380 ORTHO05D000561 2.5e-06 55.1 50 60.0
Dinv41296 Davidia involucrata HOM05D000380 ORTHO05D000561 2.5e-06 55.1 47 59.6
Potri.001G139500 Populus trichocarpa HOM05D000380 ORTHO05D000561 2.5e-06 55.1 50 62.0
Aqoxy3G03037 Aquilegia oxysepala HOM05D000380 ORTHO05D000561 3.2e-06 54.7 50 58.0
AL7G36790 Arabidopsis lyrata HOM05D000380 ORTHO05D000561 3.2e-06 54.7 50 60.0
AT4G17770 Arabidopsis thaliana HOM05D000380 ORTHO05D000561 3.2e-06 54.7 50 60.0
MSTRG.1991 Avicennia marina HOM05D000380 ORTHO05D000561 3.2e-06 54.7 54 63.0
Carub.0007s2359 Capsella rubella HOM05D000380 ORTHO05D000561 3.2e-06 54.7 50 60.0
CARHR224490 Cardamine hirsuta HOM05D000380 ORTHO05D000561 3.2e-06 54.7 50 60.0
Duzib251G0719 Durio zibethinus HOM05D000380 ORTHO05D000561 3.2e-06 54.7 37 67.6
Lj6C735T2 Lonicera japonica HOM05D000380 ORTHO05D000561 3.2e-06 54.7 50 60.0
Rhsim09G0088400 Rhododendron simsii HOM05D000380 ORTHO05D000561 3.2e-06 54.7 37 70.3
Hund14352 Selenicereus undatus HOM05D000380 ORTHO05D000561 3.2e-06 54.7 50 64.0
TAR266G0004 Trochodendron aralioides HOM05D000380 ORTHO05D000561 3.2e-06 54.7 49 57.1
Atru.chr11.868 Acer truncatum HOM05D000380 ORTHO05D000561 4.2e-06 54.3 53 56.6
BcaC06g33592 Brassica carinata HOM05D000380 ORTHO05D000561 4.2e-06 54.3 50 60.0
BcaNung04034 Brassica carinata HOM05D000380 ORTHO05D000561 4.2e-06 54.3 50 60.0
A03p50710 Brassica napus HOM05D000380 ORTHO05D000561 4.2e-06 54.3 50 60.0
BolC7t45421H Brassica oleracea HOM05D000380 ORTHO05D000561 4.2e-06 54.3 50 60.0
BraA03t14162Z Brassica rapa HOM05D000380 ORTHO05D000561 4.2e-06 54.3 50 60.0
Eucgr.E00259 Eucalyptus grandis HOM05D000380 ORTHO05D000561 4.2e-06 54.3 37 73.0
Thhalv10024381m.g Eutrema salsugineum HOM05D000380 ORTHO05D000561 4.2e-06 54.3 50 60.0
Sabra03G0063600 Salix brachista HOM05D000380 ORTHO05D000561 4.2e-06 54.3 53 58.5
Sabra18G0084500 Salix brachista HOM05D000380 ORTHO05D000139 4.2e-06 54.3 50 58.0
Sp7g16330 Schrenkiella parvula HOM05D000380 ORTHO05D000561 4.2e-06 54.3 50 60.0
CiPaw.05G185100 Carya illinoinensis HOM05D000380 ORTHO05D010349 5.5e-06 53.9 37 67.6
CiPaw.12G066400 Carya illinoinensis HOM05D000380 ORTHO05D000561 5.5e-06 53.9 59 59.3
Eucgr.B02686 Eucalyptus grandis HOM05D000380 ORTHO05D000561 5.5e-06 53.9 37 67.6
Gohir.A03G111900 Gossypium hirsutum HOM05D000380 ORTHO05D000561 5.5e-06 53.9 53 56.6
Gohir.D02G136400 Gossypium hirsutum HOM05D000380 ORTHO05D000561 5.5e-06 53.9 53 56.6
Gorai.005G152400 Gossypium raimondii HOM05D000380 ORTHO05D000561 5.5e-06 53.9 53 56.6
Sabra08G0104300 Salix brachista HOM05D000380 ORTHO05D000561 5.5e-06 53.9 54 55.6
vmacro13081 Vaccinium macrocarpon HOM05D000380 ORTHO05D000561 5.5e-06 53.9 46 60.9
Atru.chr11.1999 Acer truncatum HOM05D000380 ORTHO05D000561 7.1e-06 53.5 54 53.7
Aa31LG6G510 Aethionema arabicum HOM05D000380 ORTHO05D000561 7.1e-06 53.5 50 60.0
CAN.G459.2 Capsicum annuum HOM05D000380 ORTHO05D010349 7.1e-06 53.5 34 70.6
Ciclev10007428m.g Citrus clementina HOM05D000380 ORTHO05D000561 7.1e-06 53.5 46 58.7
ECA234G2886 Erigeron canadensis HOM05D000380 ORTHO05D000561 7.1e-06 53.5 54 61.1
Rhsim01G0009900 Rhododendron simsii HOM05D000380 ORTHO05D000561 7.1e-06 53.5 46 58.7
Hund26394 Selenicereus undatus HOM05D000380 ORTHO05D000561 7.1e-06 53.5 46 60.9
arahy.Tifrunner.gnm1.ann1.FP7P7G Arachis hypogaea HOM05D000380 ORTHO05D000561 9.3e-06 53.1 61 54.1
Haze_08184 Corylus avellana HOM05D000380 ORTHO05D000561 9.3e-06 53.1 59 57.6
Eucgr.C00201 Eucalyptus grandis HOM05D000380 ORTHO05D000561 9.3e-06 53.1 46 58.7


User provided reference genes

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