Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 5.8e-167 590.9 314 100.0
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 1.5e-162 576.2 314 93.9
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 5.9e-143 511.1 280 92.1
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 1.4e-136 490.0 322 76.7
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 1.3e-126 456.8 329 72.0
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 9.4e-125 450.7 323 73.4
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 1.2e-124 450.3 320 74.1
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 3.3e-122 442.2 326 70.9
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 7.5e-122 441.0 318 69.2
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 1.1e-120 437.2 322 73.0
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 1.2e-119 433.7 322 72.7
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 2.6e-119 432.6 321 69.2
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 4.5e-119 431.8 327 69.7
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 5.9e-119 431.4 324 69.1
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 7.7e-119 431.0 322 68.6
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 2.2e-118 429.5 322 71.1
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 2.2e-118 429.5 323 68.1
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 3.8e-118 428.7 324 68.5
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 3.8e-118 428.7 319 68.0
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 5.0e-118 428.3 322 69.3
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 5.0e-118 428.3 320 67.5
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 5.0e-118 428.3 316 74.7
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 5.0e-118 428.3 320 68.4
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 5.0e-118 428.3 322 69.3
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 5.0e-118 428.3 318 68.9
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 6.5e-118 427.9 326 70.6
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 8.5e-118 427.6 323 68.4
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.1e-117 427.2 323 68.1
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.1e-117 427.2 316 74.4
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 1.1e-117 427.2 320 67.5
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 1.5e-117 426.8 328 67.4
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 1.5e-117 426.8 320 67.5
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 2.5e-117 426.0 317 67.8
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 2.5e-117 426.0 323 66.6
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 3.2e-117 425.6 322 70.5
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 3.2e-117 425.6 320 68.4
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 5.5e-117 424.9 321 71.0
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 1.2e-116 423.7 321 67.9
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 1.2e-116 423.7 321 68.5
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 1.6e-116 423.3 327 67.6
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 2.7e-116 422.5 323 66.3
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 2.7e-116 422.5 319 67.4
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 3.6e-116 422.2 325 68.6
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 3.6e-116 422.2 323 67.2
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.6e-116 422.2 328 66.5
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 3.6e-116 422.2 325 65.5
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 4.7e-116 421.8 323 67.8
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 4.7e-116 421.8 323 70.0
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 8.0e-116 421.0 323 67.5
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 8.0e-116 421.0 346 65.3
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 8.0e-116 421.0 318 68.2
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.0e-115 420.6 323 67.8
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.0e-115 420.6 323 67.8
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 1.4e-115 420.2 320 69.1
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 1.8e-115 419.9 321 71.0
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 1.8e-115 419.9 326 66.9
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 4.0e-115 418.7 323 67.5
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 6.8e-115 417.9 327 67.3
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 6.8e-115 417.9 328 66.5
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 6.8e-115 417.9 322 64.9
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 1.2e-114 417.2 321 67.9
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 1.2e-114 417.2 321 67.9
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 1.5e-114 416.8 320 68.1
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 1.5e-114 416.8 320 69.7
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 1.5e-114 416.8 323 67.2
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 2.0e-114 416.4 319 68.7
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 5.7e-114 414.8 359 62.4
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 7.5e-114 414.5 320 65.0
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 1.3e-113 413.7 321 67.0
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 2.8e-113 412.5 320 64.1
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 4.8e-113 411.8 317 64.4
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 4.8e-113 411.8 318 67.9
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 1.1e-112 410.6 348 64.1
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 1.1e-112 410.6 324 69.4
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 1.4e-112 410.2 263 76.4
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 1.4e-112 410.2 319 65.8
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 1.8e-112 409.8 322 64.3
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 4.1e-112 408.7 318 68.6
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 2.0e-111 406.4 317 65.0
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 2.7e-111 406.0 321 66.0
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 4.5e-111 405.2 319 68.0
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 7.7e-111 404.4 318 64.5
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 1.3e-110 403.7 319 64.3
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 1.3e-110 403.7 265 73.2
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 5.0e-110 401.7 323 64.7
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 8.5e-110 401.0 325 63.1
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 2.5e-109 399.4 323 62.8
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 3.2e-109 399.1 317 67.8
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 4.2e-109 398.7 321 64.8
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 4.2e-109 398.7 317 66.9
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 1.2e-108 397.1 323 65.3
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 1.2e-108 397.1 321 66.0
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 1.2e-108 397.1 321 66.0
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 4.7e-108 395.2 317 63.1
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 6.1e-108 394.8 323 67.2
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 1.4e-107 393.7 323 66.9
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 1.5e-106 390.2 324 66.7
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 2.4e-104 382.9 271 69.4
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 5.9e-103 378.3 317 61.2
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 5.6e-101 371.7 262 67.6
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 4.7e-100 368.6 327 59.9
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 1.4e-99 367.1 263 69.2
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 2.3e-99 366.3 264 66.7
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 5.4e-96 355.1 310 62.9
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 5.4e-96 355.1 324 57.1
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 3.9e-94 349.0 497 43.7
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.1e-93 347.4 203 84.2
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 8.9e-91 337.8 322 56.8
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 7.5e-82 308.1 267 56.6
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 3.2e-80 302.8 190 78.4
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 4.1e-80 302.4 262 56.9
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 1.1e-77 294.3 182 81.9
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 1.7e-73 280.4 167 82.0
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 1.6e-71 273.9 175 76.0
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 6.0e-71 271.9 167 79.6
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 7.8e-71 271.6 175 76.6
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 3.5e-55 219.5 202 55.9
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 1.4e-48 197.6 122 80.3
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 7.1e-48 195.3 186 56.5
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 3.5e-47 193.0 158 57.6
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.3e-46 190.3 129 74.4
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.5e-45 186.8 118 78.0
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 7.4e-45 185.3 186 58.1
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 6.2e-44 182.2 119 74.8
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.9e-41 173.3 112 75.9
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.4e-35 154.5 118 69.5
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.4e-35 153.7 95 83.2
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 6.9e-27 125.6 151 53.0
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 5.1e-22 109.4 73 72.6
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 1.1e-11 75.1 55 67.3
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 5.3e-11 72.8 161 33.5
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 1.6e-10 71.2 75 49.3
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 1.3e-09 68.2 140 34.3
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 2.9e-09 67.0 144 35.4
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 7.2e-08 62.4 144 33.3
Cre09.g386747 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 1.2e-07 61.6 146 33.6
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 2.3e-06 57.4 56 53.6
Cre12.g552600 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 5.2e-06 56.2 144 31.2


User provided reference genes

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