Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0537331 Helianthus annuus HOM05D003542 ORTHO05D004799 1.2e-160 569.7 265 100.0
HanXRQChr06g0173181 Helianthus annuus HOM05D003542 ORTHO05D004799 3.4e-128 461.8 243 85.6
HanXRQChr17g0537321 Helianthus annuus HOM05D003542 ORTHO05D004799 5.9e-128 461.1 242 88.0
ECA246G1310 Erigeron canadensis HOM05D003542 ORTHO05D004799 2.5e-126 455.7 243 84.8
CSS0026658 Camellia sinensis var. sinensis HOM05D003542 ORTHO05D004799 6.1e-117 424.5 243 77.4
Hma1.2p1_0839F.1_g226340 Hydrangea macrophylla HOM05D003542 ORTHO05D004799 5.7e-115 417.9 242 76.4
Lsat_1_v5_gn_3_20301 Lactuca sativa HOM05D003542 ORTHO05D004799 9.7e-115 417.2 243 79.0
Thecc.03G319900 Theobroma cacao HOM05D003542 ORTHO05D004799 1.8e-113 412.9 244 77.0
CiPaw.12G055200 Carya illinoinensis HOM05D003542 ORTHO05D004799 2.4e-113 412.5 243 76.1
Manes.15G191800 Manihot esculenta HOM05D003542 ORTHO05D004799 5.3e-113 411.4 244 75.8
Manes.17G001100 Manihot esculenta HOM05D003542 ORTHO05D004799 7.0e-113 411.0 243 75.7
Cfa012300 Carpinus fangiana HOM05D003542 ORTHO05D004799 1.2e-112 410.2 243 74.5
GSVIVG01036881001 Vitis vinifera HOM05D003542 ORTHO05D004799 2.6e-112 409.1 244 76.2
Duzib205G1391 Durio zibethinus HOM05D003542 ORTHO05D004799 4.5e-112 408.3 244 75.4
Prupe.5G011600 Prunus persica HOM05D003542 ORTHO05D004799 1.7e-111 406.4 243 75.7
PGR042G1333 Punica granatum HOM05D003542 ORTHO05D004799 2.9e-111 405.6 243 73.7
FAN08G1408 Fragaria x ananassa HOM05D003542 ORTHO05D004799 3.8e-111 405.2 243 75.7
CANSAT80G0877 Cannabis sativa HOM05D003542 ORTHO05D004799 6.5e-111 404.4 242 75.6
MD06G1008500 Malus domestica HOM05D003542 ORTHO05D004799 6.5e-111 404.4 243 75.7
RcHm_v2.0_Chr7g0215361 Rosa chinensis HOM05D003542 ORTHO05D004799 1.5e-110 403.3 243 74.9
Actinidia01250 Actinidia chinensis HOM05D003542 ORTHO05D004799 1.9e-110 402.9 243 73.3
FAN13G1207 Fragaria x ananassa HOM05D003542 ORTHO05D004799 2.5e-110 402.5 243 75.3
FvH4_5g25240 Fragaria vesca HOM05D003542 ORTHO05D004799 5.5e-110 401.4 243 74.9
Gorai.008G219000 Gossypium raimondii HOM05D003542 ORTHO05D004799 1.2e-109 400.2 244 73.8
CiPaw.11G074400 Carya illinoinensis HOM05D003542 ORTHO05D004799 2.1e-109 399.4 243 73.7
Cc08_g05880 Coffea canephora HOM05D003542 ORTHO05D004799 4.7e-109 398.3 244 73.4
VMungo1215G0924 Vigna mungo HOM05D003542 ORTHO05D004799 6.1e-109 397.9 244 73.4
Gohir.D12G204200 Gossypium hirsutum HOM05D003542 ORTHO05D004799 8.0e-109 397.5 244 73.0
SGA_v2.0_scaffold96G29103 Striga asiatica HOM05D003542 ORTHO05D004799 2.3e-108 396.0 243 74.1
FAN18G2203 Fragaria x ananassa HOM05D003542 ORTHO05D004799 4.0e-108 395.2 258 71.3
Gohir.A08G149000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 4.0e-108 395.2 244 73.8
Oeu036053.1 Olea europaea HOM05D003542 ORTHO05D004799 4.0e-108 395.2 243 73.3
BcaB02g09412 Brassica carinata HOM05D003542 ORTHO05D004799 5.2e-108 394.8 243 72.8
Rhsim11G0037300 Rhododendron simsii HOM05D003542 ORTHO05D004799 6.7e-108 394.4 264 72.7
TAR375G0128 Trochodendron aralioides HOM05D003542 ORTHO05D004799 6.7e-108 394.4 243 73.3
C04p12510 Brassica napus HOM05D003542 ORTHO05D004799 8.8e-108 394.0 243 72.0
BolC4t22898H Brassica oleracea HOM05D003542 ORTHO05D004799 8.8e-108 394.0 243 72.0
Gorai.004G177500 Gossypium raimondii HOM05D003542 ORTHO05D004799 8.8e-108 394.0 244 73.8
Phvul.002G122000 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 8.8e-108 394.0 244 72.1
Sp4g17820 Schrenkiella parvula HOM05D003542 ORTHO05D004799 1.2e-107 393.7 243 72.8
Sc07g0007990 Simmondsia chinensis HOM05D003542 ORTHO05D004799 1.2e-107 393.7 243 73.3
Thhalv10016368m.g Eutrema salsugineum HOM05D003542 ORTHO05D004799 1.5e-107 393.3 243 72.4
Lj2g0004183 Lotus japonicus HOM05D003542 ORTHO05D004799 1.5e-107 393.3 243 71.2
Potri.004G235800 Populus trichocarpa HOM05D003542 ORTHO05D004799 1.5e-107 393.3 243 72.4
Carub.0004s1730 Capsella rubella HOM05D003542 ORTHO05D004799 2.0e-107 392.9 244 71.3
CARHR129800 Cardamine hirsuta HOM05D003542 ORTHO05D004799 2.0e-107 392.9 244 72.1
DCAR_004534 Daucus carota HOM05D003542 ORTHO05D004799 2.0e-107 392.9 243 73.3
AT2G35610 Arabidopsis thaliana HOM05D003542 ORTHO05D004799 5.7e-107 391.3 243 72.4
Aa31LG9G15750 Aethionema arabicum HOM05D003542 ORTHO05D004799 7.5e-107 391.0 245 69.8
BcaC02g11677 Brassica carinata HOM05D003542 ORTHO05D004799 7.5e-107 391.0 243 71.6
Glyma.01G153600 Glycine max HOM05D003542 ORTHO05D004799 7.5e-107 391.0 243 72.0
TWI60G1302 Tripterygium wilfordii HOM05D003542 ORTHO05D004799 7.5e-107 391.0 243 72.4
BcaB06g28850 Brassica carinata HOM05D003542 ORTHO05D004799 9.7e-107 390.6 243 72.0
Cc08_g05890 Coffea canephora HOM05D003542 ORTHO05D004799 9.7e-107 390.6 244 72.5
Gohir.D08G170000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 9.7e-107 390.6 244 73.0
MSTRG.25746 Avicennia marina HOM05D003542 ORTHO05D004799 1.3e-106 390.2 243 72.0
Eucgr.E01147 Eucalyptus grandis HOM05D003542 ORTHO05D004799 1.3e-106 390.2 243 71.6
Ciclev10011269m.g Citrus clementina HOM05D003542 ORTHO05D004799 1.7e-106 389.8 243 72.0
A04p27010 Brassica napus HOM05D003542 ORTHO05D004799 2.8e-106 389.0 243 71.6
BraA04t18202Z Brassica rapa HOM05D003542 ORTHO05D004799 2.8e-106 389.0 243 71.6
AL4G31650 Arabidopsis lyrata HOM05D003542 ORTHO05D004799 4.8e-106 388.3 243 71.2
Nitab4.5_0002603g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 6.3e-106 387.9 242 71.9
Aqoxy5G03565 Aquilegia oxysepala HOM05D003542 ORTHO05D004799 8.3e-106 387.5 242 72.3
THA.LOC104798529 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 8.3e-106 387.5 243 72.4
Nitab4.5_0006371g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 1.1e-105 387.1 242 71.9
Sed0016507 Sechium edule HOM05D003542 ORTHO05D004799 1.1e-105 387.1 243 72.8
A05p10120 Brassica napus HOM05D003542 ORTHO05D004799 1.4e-105 386.7 243 71.6
BraA05t19953Z Brassica rapa HOM05D003542 ORTHO05D004799 1.4e-105 386.7 243 71.6
Nn3g19110 Nelumbo nucifera HOM05D003542 ORTHO05D004799 2.4e-105 386.0 243 72.0
Glyma.11G091000 Glycine max HOM05D003542 ORTHO05D004799 3.1e-105 385.6 243 71.2
Glyma.16G076700 Glycine max HOM05D003542 ORTHO05D004799 3.1e-105 385.6 245 70.2
MELO3C010524.2 Cucumis melo HOM05D003542 ORTHO05D004799 4.1e-105 385.2 243 72.4
CsaV3_4G027890 Cucumis sativus L. HOM05D003542 ORTHO05D004799 4.1e-105 385.2 243 72.4
Peaxi162Scf00053g00006 Petunia axillaris HOM05D003542 ORTHO05D004799 4.1e-105 385.2 242 71.1
PSO675G5456 Papaver somniferum HOM05D003542 ORTHO05D004799 5.3e-105 384.8 244 72.1
arahy.Tifrunner.gnm1.ann1.GAUN3U Arachis hypogaea HOM05D003542 ORTHO05D004799 7.0e-105 384.4 248 71.4
arahy.Tifrunner.gnm1.ann1.JPC2KC Arachis hypogaea HOM05D003542 ORTHO05D004799 7.0e-105 384.4 248 71.4
Solyc08g075340.3 Solanum lycopersicum HOM05D003542 ORTHO05D004799 7.0e-105 384.4 242 71.1
Sopen08g023950 Solanum pennellii HOM05D003542 ORTHO05D004799 9.1e-105 384.0 242 70.7
Migut.A00523 Erythranthe guttata HOM05D003542 ORTHO05D004799 1.2e-104 383.6 243 72.0
PSO502G0023 Papaver somniferum HOM05D003542 ORTHO05D004799 1.6e-104 383.3 244 71.7
Lalb_Chr05g0215151 Lupinus albus HOM05D003542 ORTHO05D004799 4.5e-104 381.7 243 70.8
arahy.Tifrunner.gnm1.ann1.B24I2L Arachis hypogaea HOM05D003542 ORTHO05D004799 5.9e-104 381.3 255 67.8
TPR.G8991 Trifolium pratense HOM05D003542 ORTHO05D004799 1.0e-103 380.6 243 70.0
Glyma.16G109700 Glycine max HOM05D003542 ORTHO05D004799 1.3e-103 380.2 246 68.7
Psat2g145280 Pisum sativum HOM05D003542 ORTHO05D004799 1.3e-103 380.2 243 70.4
CAN.G998.13 Capsicum annuum HOM05D003542 ORTHO05D004799 1.7e-103 379.8 242 70.2
Lalb_Chr05g0229201 Lupinus albus HOM05D003542 ORTHO05D004799 1.7e-103 379.8 243 69.1
BcaC02g07760 Brassica carinata HOM05D003542 ORTHO05D004799 5.0e-103 378.3 242 70.7
C04p64420 Brassica napus HOM05D003542 ORTHO05D004799 5.0e-103 378.3 242 70.7
BolC4t27926H Brassica oleracea HOM05D003542 ORTHO05D004799 5.0e-103 378.3 242 70.7
Ca_25048_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 8.5e-103 377.5 243 69.5
BcaC02g11676 Brassica carinata HOM05D003542 ORTHO05D004799 1.1e-102 377.1 268 64.9
Medtr5g025590 Medicago truncatula HOM05D003542 ORTHO05D004799 1.1e-102 377.1 243 68.7
TPR.G14272 Trifolium pratense HOM05D003542 ORTHO05D004799 1.1e-102 377.1 243 69.5
Phvul.003G278500 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 4.2e-102 375.2 244 68.4
arahy.Tifrunner.gnm1.ann1.2M3042 Arachis hypogaea HOM05D003542 ORTHO05D004799 9.4e-102 374.0 243 69.1
Psat4g107640 Pisum sativum HOM05D003542 ORTHO05D004799 1.2e-101 373.6 243 67.5
Lj4g0008068 Lotus japonicus HOM05D003542 ORTHO05D004799 2.1e-101 372.9 243 68.3
Ca_22456_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 6.1e-101 371.3 243 67.9
VMungo0251G1439 Vigna mungo HOM05D003542 ORTHO05D004799 2.3e-100 369.4 244 67.6
Cc04_g11570 Coffea canephora HOM05D003542 ORTHO05D004799 1.5e-99 366.7 244 67.6
Medtr8g072310 Medicago truncatula HOM05D003542 ORTHO05D004799 4.4e-99 365.2 243 66.3
Lj8C8T8 Lonicera japonica HOM05D003542 ORTHO05D004799 1.7e-98 363.2 244 67.6
Cc04_g11590 Coffea canephora HOM05D003542 ORTHO05D004799 2.4e-97 359.4 244 66.0
ATR0568G062 Amborella trichopoda HOM05D003542 ORTHO05D004799 1.6e-96 356.7 242 67.8
Sed0027808 Sechium edule HOM05D003542 ORTHO05D004799 2.3e-95 352.8 246 67.1
CDE01G0249 Ceratophyllum demersum HOM05D003542 ORTHO05D004799 5.5e-94 348.2 236 65.7
Haze_08429 Corylus avellana HOM05D003542 ORTHO05D004799 4.7e-93 345.1 243 65.8
EL10Ac5g12587 Beta vulgaris HOM05D003542 ORTHO05D004799 1.4e-92 343.6 243 65.0
SalBow4G0461 Salvia bowleyana HOM05D003542 ORTHO05D004799 2.3e-92 342.8 243 64.6
SHI32767 Sapria himalayana HOM05D003542 ORTHO05D004799 3.0e-92 342.4 244 65.6
Hund14306 Selenicereus undatus HOM05D003542 ORTHO05D004799 2.6e-91 339.3 243 64.6
THA.LOC104814389 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 4.9e-90 335.1 227 68.3
MBI15_g33455_MAGBIO Magnolia biondii HOM05D003542 ORTHO05D004799 8.3e-90 334.3 243 62.6
Lalb_Chr16g0391801 Lupinus albus HOM05D003542 ORTHO05D004799 1.6e-88 330.1 243 59.7
Sabra01G0180200 Salix brachista HOM05D003542 ORTHO05D004799 7.8e-88 327.8 275 57.8
AUR62030410 Chenopodium quinoa HOM05D003542 ORTHO05D004799 2.3e-87 326.2 243 62.6
AUR62010484 Chenopodium quinoa HOM05D003542 ORTHO05D004799 2.9e-87 325.9 243 62.6
ClCG11G016080 Citrullus lanatus HOM05D003542 ORTHO05D004799 2.9e-87 325.9 243 63.8
HPP92_014853 Vanilla planifolia HOM05D003542 ORTHO05D004799 1.6e-85 320.1 218 66.1
Aa31LG2G14340 Aethionema arabicum HOM05D003542 ORTHO05D004799 1.8e-84 316.6 235 63.8
SEGI_27818 Sequoiadendron giganteum HOM05D003542 ORTHO05D004799 1.8e-84 316.6 244 57.4
FAN18G0768 Fragaria x ananassa HOM05D003542 ORTHO05D004799 4.0e-84 315.5 230 64.3
Cc04_g11580 Coffea canephora HOM05D003542 ORTHO05D004799 1.7e-82 310.1 239 62.3
QL12p003762 Quercus lobata HOM05D003542 ORTHO05D004799 3.7e-82 308.9 194 74.2
Mapoly0019s0126 Marchantia polymorpha HOM05D003542 ORTHO05D004799 1.0e-79 300.8 243 54.3
Atru.chr8.2622 Acer truncatum HOM05D003542 ORTHO05D004799 2.1e-77 293.1 188 72.9
SMO329G0009 Selaginella moellendorffii HOM05D003542 ORTHO05D004799 9.2e-73 277.7 247 51.4
AagrBONN_evm.TU.Sc2ySwM_344.2406 Anthoceros agrestis HOM05D003542 ORTHO05D004799 2.7e-72 276.2 241 49.0
Ah.12g058430 Amaranthus hybridus HOM05D003542 ORTHO05D004799 5.1e-71 271.9 242 52.5
Pp3c12_18450 Physcomitrium patens HOM05D003542 ORTHO05D004799 5.6e-70 268.5 241 51.0
Gohir.A12G201400 Gossypium hirsutum HOM05D003542 ORTHO05D004799 1.3e-66 257.3 168 69.0
TAR374G0820 Trochodendron aralioides HOM05D003542 ORTHO05D018761 8.1e-61 238.0 177 62.7
C04p13130 Brassica napus HOM05D003542 ORTHO05D004799 4.4e-59 232.3 163 66.9
Cpa.g.sc352.2 Carica papaya HOM05D003542 ORTHO05D018761 9.9e-59 231.1 159 70.4
BcaC02g11616 Brassica carinata HOM05D003542 ORTHO05D004799 2.2e-58 229.9 168 64.9
MCO06G136 Micromonas commoda HOM05D003542 ORTHO05D004799 3.4e-51 206.1 232 44.4
MBI06_g04285_MAGBIO Magnolia biondii HOM05D003542 ORTHO05D018761 7.3e-46 188.3 257 43.2
vmacro00095 Vaccinium macrocarpon HOM05D003542 ORTHO05D004799 1.6e-45 187.2 161 58.4
COL.COLO4_16751 Corchorus olitorius HOM05D003542 ORTHO05D004799 3.6e-45 186.0 148 60.1
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 3.4e-43 179.5 120 62.5
PSO675G7261 Papaver somniferum HOM05D003542 ORTHO05D018761 4.5e-43 179.1 143 59.4
Sed0024265 Sechium edule HOM05D003542 ORTHO05D004799 4.6e-40 169.1 93 75.3
Zm00001eb049170 Zea mays HOM05D003542 ORTHO05D004799 2.1e-37 160.2 89 76.4
Cre14.g629000 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 1.1e-36 157.9 248 36.3
Cre07.g332500 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 4.9e-34 149.1 240 33.3
CDE04G2998 Ceratophyllum demersum HOM05D003542 ORTHO05D018761 3.3e-30 136.3 82 70.7
PRCOL_00003662 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 3.7e-29 132.9 248 33.5
PRCOL_00007053 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 1.6e-24 117.5 239 31.4
BcaB06g28849 Brassica carinata HOM05D003542 ORTHO05D018761 1.4e-20 104.4 51 80.4
MCO04G331 Micromonas commoda HOM05D003542 ORTHO05D004799 1.5e-19 100.9 131 36.6
Cre04.g217949 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 2.0e-19 100.5 194 32.5
TAR374G1176 Trochodendron aralioides HOM05D003542 ORTHO05D004799 2.2e-18 97.1 51 88.2
Cre01.g000500 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 8.5e-18 95.1 208 32.2
Cpa.g.sc2620.1 Carica papaya HOM05D003542 ORTHO05D018761 1.4e-17 94.4 50 88.0
Cre01.g000450 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 7.2e-17 92.0 208 31.7
MD16G1285600 Malus domestica HOM05D003542 ORTHO05D018761 9.4e-17 91.7 74 60.8
Cre01.g000400 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 4.6e-16 89.4 217 30.4
Cre07.g340950 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 1.3e-13 81.3 203 29.1
AUR62032944 Chenopodium quinoa HOM05D003542 ORTHO05D000062 9.1e-12 75.1 61 52.5
Cre13.g568200 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 2.5e-09 67.0 184 25.5
PRCOL_00003997 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 3.2e-09 66.6 261 22.2
MCO13G070 Micromonas commoda HOM05D003542 ORTHO05D004799 7.2e-09 65.5 103 31.1
MCO09G799 Micromonas commoda HOM05D003542 ORTHO05D004799 1.2e-08 64.7 171 28.1
Cre01.g000550 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 3.0e-07 60.1 130 30.8
PRCOL_00002802 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 3.0e-07 60.1 109 31.2


User provided reference genes

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