Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 1.5e-99 366.7 265 100.0
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 5.1e-47 192.2 190 58.4
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 4.3e-46 189.1 193 57.0
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 7.9e-40 168.3 198 57.1
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 5.0e-18 95.9 225 36.9
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 6.1e-16 89.0 200 38.0
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 6.1e-16 89.0 212 38.7
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 7.9e-16 88.6 195 38.5
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 1.4e-15 87.8 202 37.6
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 3.0e-15 86.7 216 37.5
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 1.5e-14 84.3 225 37.8
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 5.7e-14 82.4 198 35.4
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.7e-13 80.9 197 36.0
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 2.2e-13 80.5 198 34.8
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 2.8e-13 80.1 200 36.0
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 4.8e-13 79.3 218 38.1
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 6.3e-13 79.0 201 36.3
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 8.2e-13 78.6 216 33.8
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 8.2e-13 78.6 200 32.5
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 1.8e-12 77.4 217 33.6
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 2.4e-12 77.0 196 37.2
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 3.1e-12 76.6 209 36.4
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 4.1e-12 76.3 198 35.9
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 4.1e-12 76.3 194 36.1
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 4.1e-12 76.3 218 37.2
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 6.9e-12 75.5 190 38.9
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 6.9e-12 75.5 167 34.1
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 6.9e-12 75.5 219 37.0
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 9.1e-12 75.1 198 31.3
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 9.1e-12 75.1 198 35.4
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 1.2e-11 74.7 207 34.8
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 2.0e-11 73.9 198 35.4
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 2.0e-11 73.9 197 31.5
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 2.6e-11 73.6 205 33.7
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.4e-11 73.2 184 35.9
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 4.5e-11 72.8 214 32.7
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 7.7e-11 72.0 187 35.8
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 1.0e-10 71.6 144 35.4
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 1.0e-10 71.6 206 34.0
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 1.0e-10 71.6 222 34.2
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 1.3e-10 71.2 169 35.5
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 2.2e-10 70.5 199 32.7
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 2.9e-10 70.1 209 32.5
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 6.5e-10 68.9 138 38.4
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 6.5e-10 68.9 148 37.8
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 8.5e-10 68.6 144 35.4
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 1.1e-09 68.2 219 32.4
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 1.1e-09 68.2 187 33.7
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 1.9e-09 67.4 139 39.6
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 2.5e-09 67.0 184 35.3
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 3.2e-09 66.6 187 32.6
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 5.5e-09 65.9 193 35.2
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 5.5e-09 65.9 128 36.7
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 7.2e-09 65.5 191 31.4
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 7.2e-09 65.5 191 34.0
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 7.2e-09 65.5 188 34.0
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 1.2e-08 64.7 182 32.4
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 1.2e-08 64.7 196 33.2
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.2e-08 64.7 135 35.6
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 2.7e-08 63.5 185 33.5
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 3.6e-08 63.2 176 31.2
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 3.6e-08 63.2 187 32.1
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 3.6e-08 63.2 57 56.1
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 6.1e-08 62.4 197 34.0
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 6.1e-08 62.4 65 49.2
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 6.1e-08 62.4 65 49.2
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 1.0e-07 61.6 67 53.7
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 1.0e-07 61.6 67 53.7
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.4e-07 61.2 111 38.7
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 1.4e-07 61.2 55 52.7
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 1.4e-07 61.2 210 31.0
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 1.8e-07 60.8 195 32.8
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 1.8e-07 60.8 219 29.2
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 2.3e-07 60.5 64 51.6
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 2.3e-07 60.5 66 51.5
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 3.0e-07 60.1 191 30.9
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 3.0e-07 60.1 138 36.2
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 3.0e-07 60.1 197 34.0
Aqoxy3G02279 Aquilegia oxysepala HOM05D006310 ORTHO05D007768 3.9e-07 59.7 213 29.1
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 3.9e-07 59.7 65 47.7
SEGI_03197 Sequoiadendron giganteum HOM05D006310 ORTHO05D007768 3.9e-07 59.7 62 56.5
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 6.7e-07 58.9 203 29.6
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 6.7e-07 58.9 48 56.2
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 8.8e-07 58.5 65 47.7
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 8.8e-07 58.5 205 30.2
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 8.8e-07 58.5 48 58.3
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 2.0e-06 57.4 43 60.5
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 2.0e-06 57.4 192 32.8
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 2.6e-06 57.0 207 31.4
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 3.3e-06 56.6 201 32.3
THA.LOC104811030 Tarenaya hassleriana HOM05D001903 ORTHO05D001847 3.3e-06 56.6 210 30.0
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 4.4e-06 56.2 144 35.4
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 5.7e-06 55.8 111 31.5
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 5.7e-06 55.8 73 46.6
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 5.7e-06 55.8 94 38.3
CSS0008952 Camellia sinensis var. sinensis HOM05D001903 ORTHO05D001847 7.4e-06 55.5 136 31.6
arahy.Tifrunner.gnm1.ann1.LW11C9 Arachis hypogaea HOM05D001903 ORTHO05D001847 9.7e-06 55.1 93 37.6
arahy.Tifrunner.gnm1.ann1.UKR13J Arachis hypogaea HOM05D001903 ORTHO05D001847 9.7e-06 55.1 93 37.6
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 9.7e-06 55.1 131 32.8
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 9.7e-06 55.1 196 31.6


User provided reference genes

Program Settings