Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 3.3e-107 391.7 197 100.0
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 7.5e-80 300.8 194 81.4
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 1.6e-77 293.1 191 79.6
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 4.2e-70 268.5 198 72.7
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 2.3e-68 262.7 184 73.9
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.7e-68 260.8 196 71.4
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 8.7e-68 260.8 160 81.2
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 1.9e-67 259.6 193 70.5
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 5.6e-67 258.1 210 68.1
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 7.3e-67 257.7 165 77.0
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 1.3e-66 256.9 199 69.3
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 2.1e-66 256.1 204 69.6
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 4.8e-66 255.0 196 69.4
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 8.1e-66 254.2 189 69.8
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 8.1e-66 254.2 165 75.8
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 8.1e-66 254.2 181 72.4
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 1.1e-65 253.8 199 67.8
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 1.4e-65 253.4 189 69.3
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 1.4e-65 253.4 201 68.2
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.4e-65 253.4 165 75.8
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 1.4e-65 253.4 197 68.0
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.8e-65 253.1 189 69.3
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 1.8e-65 253.1 192 68.8
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.8e-65 253.1 214 63.6
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 1.8e-65 253.1 193 67.9
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.4e-65 252.7 199 68.3
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 2.4e-65 252.7 199 68.8
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 3.1e-65 252.3 210 64.3
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 3.1e-65 252.3 205 65.4
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 3.1e-65 252.3 163 79.1
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 3.1e-65 252.3 189 68.3
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 5.3e-65 251.5 190 68.9
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 5.3e-65 251.5 205 64.9
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 9.0e-65 250.8 194 69.6
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 1.2e-64 250.4 189 68.8
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 1.2e-64 250.4 189 68.8
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 1.2e-64 250.4 189 68.8
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 1.2e-64 250.4 189 68.8
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 1.2e-64 250.4 192 68.2
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 1.2e-64 250.4 179 73.2
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 2.0e-64 249.6 198 68.7
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 2.6e-64 249.2 154 78.6
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 3.4e-64 248.8 189 68.8
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 3.4e-64 248.8 199 67.3
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 4.4e-64 248.4 189 68.8
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 4.4e-64 248.4 189 68.8
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 5.8e-64 248.1 194 69.1
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 5.8e-64 248.1 153 81.0
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.8e-64 248.1 195 68.2
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 5.8e-64 248.1 208 65.4
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 7.6e-64 247.7 203 66.0
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 7.6e-64 247.7 160 76.9
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 7.6e-64 247.7 195 69.7
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 9.9e-64 247.3 199 67.8
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 9.9e-64 247.3 199 67.8
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 1.3e-63 246.9 193 67.4
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.3e-63 246.9 155 78.1
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 1.3e-63 246.9 195 65.1
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 1.7e-63 246.5 197 69.0
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.7e-63 246.5 199 67.8
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 2.2e-63 246.1 153 77.8
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.2e-63 246.1 190 66.8
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.9e-63 245.7 195 66.2
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 3.8e-63 245.4 190 66.8
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.8e-63 245.4 190 66.8
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.8e-63 245.4 190 66.8
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 4.9e-63 245.0 199 67.8
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 8.4e-63 244.2 151 78.1
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 8.4e-63 244.2 186 67.2
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 1.1e-62 243.8 153 77.8
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 1.1e-62 243.8 123 98.4
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.4e-62 243.4 151 78.8
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 1.4e-62 243.4 198 66.7
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 1.4e-62 243.4 165 73.9
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.9e-62 243.0 153 79.7
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 2.4e-62 242.7 196 65.3
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 2.4e-62 242.7 152 75.0
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 2.4e-62 242.7 150 79.3
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.2e-62 242.3 190 65.8
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 4.2e-62 241.9 199 68.8
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 5.4e-62 241.5 150 78.7
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 9.3e-62 240.7 199 65.3
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.6e-61 240.0 182 70.3
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 2.1e-61 239.6 183 69.9
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 2.7e-61 239.2 206 62.6
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 3.5e-61 238.8 203 62.6
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 3.5e-61 238.8 204 64.2
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 3.5e-61 238.8 198 66.7
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 4.6e-61 238.4 208 62.0
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 7.8e-61 237.7 167 73.7
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 7.8e-61 237.7 199 65.3
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.3e-60 236.9 185 69.2
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 1.7e-60 236.5 214 58.9
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.3e-60 236.1 185 68.6
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.3e-60 236.1 185 68.6
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 2.5e-59 232.6 190 65.3
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 2.5e-59 232.6 192 63.5
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 2.5e-59 232.6 208 60.6
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 3.3e-59 232.3 201 61.2
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 4.3e-59 231.9 262 51.5
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 5.6e-59 231.5 152 73.7
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 1.3e-58 230.3 177 67.8
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 4.8e-58 228.4 157 72.0
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.2e-55 219.5 205 62.0
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 4.9e-55 218.4 205 61.0
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 6.4e-55 218.0 152 73.0
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 5.4e-54 214.9 157 73.2
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 5.4e-54 214.9 189 60.8
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 9.3e-54 214.2 169 66.9
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 7.9e-53 211.1 201 56.2
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 7.9e-53 211.1 150 69.3
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 1.8e-52 209.9 204 59.8
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 1.5e-51 206.8 207 55.1
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 3.3e-51 205.7 148 70.3
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 9.6e-51 204.1 193 61.1
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 2.1e-50 203.0 205 57.6
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 4.0e-49 198.7 303 44.2
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 4.0e-49 198.7 124 76.6
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 5.3e-49 198.4 124 75.8
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 3.4e-48 195.7 118 78.0
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 1.7e-47 193.4 155 63.2
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.9e-47 191.8 120 74.2
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.9e-47 191.8 120 74.2
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.1e-46 190.7 209 55.5
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 1.1e-46 190.7 102 92.2
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 2.3e-44 183.0 135 68.9
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 9.6e-43 177.6 120 71.7
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 2.5e-38 162.9 93 83.9
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 7.9e-37 157.9 220 48.2
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 3.0e-36 156.0 146 52.1
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 8.7e-36 154.5 81 93.8
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.9e-35 153.3 157 51.0
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 5.7e-35 151.8 108 63.9
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 4.8e-34 148.7 125 56.8
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 1.2e-32 144.1 106 58.5
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 1.7e-31 140.2 106 60.4
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 1.9e-30 136.7 142 50.0
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.3e-27 125.6 67 89.6
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.3e-27 125.6 67 89.6
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.3e-26 124.0 80 76.2
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 2.6e-24 116.3 158 45.6
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 6.5e-23 111.7 103 57.3
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 2.4e-17 93.2 150 44.0
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 2.5e-14 83.2 50 78.0
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 3.2e-14 82.8 59 67.8
ECA246G0407 Erigeron canadensis HOM05D005092 ORTHO05D189067 5.7e-11 72.0 71 60.6
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 2.9e-07 59.7 38 76.3


User provided reference genes

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