Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0534901 Helianthus annuus HOM05D005638 ORTHO05D006913 2.2e-241 838.6 425 100.0
ECA246G4189 Erigeron canadensis HOM05D005638 ORTHO05D006913 6.6e-206 720.7 411 87.1
Lsat_1_v5_gn_3_11020 Lactuca sativa HOM05D005638 ORTHO05D006913 1.3e-198 696.4 414 84.5
CSS0005399 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 1.5e-186 656.4 415 77.1
CSS0002078 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 2.6e-186 655.6 415 77.1
Cc11_g09280 Coffea canephora HOM05D005638 ORTHO05D006913 2.2e-177 625.9 418 73.9
Hma1.2p1_0882F.1_g232180 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 1.6e-175 619.8 401 75.3
Nn4g24022 Nelumbo nucifera HOM05D005638 ORTHO05D006913 7.4e-173 610.9 419 72.1
CAN.G1489.15 Capsicum annuum HOM05D005638 ORTHO05D006913 1.6e-172 609.8 415 71.1
PGSC0003DMG401030517 Solanum tuberosum HOM05D005638 ORTHO05D006913 2.1e-172 609.4 416 70.9
CANSAT01G0033 Cannabis sativa HOM05D005638 ORTHO05D006913 2.0e-170 602.8 411 74.2
Haze_00683 Corylus avellana HOM05D005638 ORTHO05D006913 5.8e-170 601.3 423 71.2
Sopen05g004380 Solanum pennellii HOM05D005638 ORTHO05D006913 7.6e-170 600.9 415 70.8
Ciclev10015376m.g Citrus clementina HOM05D005638 ORTHO05D006913 9.9e-170 600.5 411 74.2
Solyc05g008540.3 Solanum lycopersicum HOM05D005638 ORTHO05D006913 9.9e-170 600.5 415 70.6
Nitab4.5_0000350g0120 Nicotiana tabacum HOM05D005638 ORTHO05D006913 4.9e-169 598.2 424 70.5
QL01p003053 Quercus lobata HOM05D005638 ORTHO05D006913 4.9e-169 598.2 437 70.0
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 1.1e-168 597.0 419 70.6
Potri.008G126300 Populus trichocarpa HOM05D005638 ORTHO05D006913 1.1e-168 597.0 417 70.7
Sed0003483 Sechium edule HOM05D005638 ORTHO05D006913 2.4e-168 595.9 407 75.2
FvH4_4g26400 Fragaria vesca HOM05D005638 ORTHO05D006913 1.2e-167 593.6 415 70.6
TWI75G0624 Tripterygium wilfordii HOM05D005638 ORTHO05D006913 1.6e-167 593.2 418 70.6
FAN12G2479 Fragaria x ananassa HOM05D005638 ORTHO05D006913 2.7e-167 592.4 415 70.4
CsaV3_5G010590 Cucumis sativus L. HOM05D005638 ORTHO05D006913 3.5e-167 592.0 407 73.5
FAN12G3267 Fragaria x ananassa HOM05D005638 ORTHO05D006913 3.5e-167 592.0 415 70.6
MSTRG.2199 Avicennia marina HOM05D005638 ORTHO05D006913 4.6e-167 591.7 415 71.8
Migut.E00391 Erythranthe guttata HOM05D005638 ORTHO05D006913 4.6e-167 591.7 415 71.1
Thecc.05G134700 Theobroma cacao HOM05D005638 ORTHO05D006913 4.6e-167 591.7 408 71.8
Prupe.1G319900 Prunus persica HOM05D005638 ORTHO05D006913 6.0e-167 591.3 418 70.8
GSVIVG01011806001 Vitis vinifera HOM05D005638 ORTHO05D006913 1.8e-166 589.7 413 70.9
Gorai.013G001800 Gossypium raimondii HOM05D005638 ORTHO05D006913 2.3e-166 589.3 414 70.5
Peaxi162Scf00205g01130 Petunia axillaris HOM05D005638 ORTHO05D006913 3.0e-166 589.0 408 71.8
COL.COLO4_22224 Corchorus olitorius HOM05D005638 ORTHO05D006913 5.6e-165 584.7 409 69.9
MELO3C034164.2 Cucumis melo HOM05D005638 ORTHO05D006913 5.6e-165 584.7 407 73.2
ClCG07G004650 Citrullus lanatus HOM05D005638 ORTHO05D006913 2.1e-164 582.8 416 72.6
Sabra08G0095100 Salix brachista HOM05D005638 ORTHO05D006913 1.4e-163 580.1 408 70.3
Gohir.A13G000300 Gossypium hirsutum HOM05D005638 ORTHO05D006913 5.3e-163 578.2 414 69.8
EL10Ac6g14273 Beta vulgaris HOM05D005638 ORTHO05D006913 2.0e-162 576.2 420 68.8
Eucgr.H00037 Eucalyptus grandis HOM05D005638 ORTHO05D006913 2.0e-162 576.2 414 69.1
Oeu064207.2 Olea europaea HOM05D005638 ORTHO05D006913 2.6e-162 575.9 462 64.5
Hund25015 Selenicereus undatus HOM05D005638 ORTHO05D006913 4.5e-162 575.1 410 71.0
RcHm_v2.0_Chr4g0434031 Rosa chinensis HOM05D005638 ORTHO05D006913 8.4e-161 570.9 411 68.9
vmacro10617 Vaccinium macrocarpon HOM05D005638 ORTHO05D006913 8.4e-161 570.9 458 64.8
Aqoxy5G03877 Aquilegia oxysepala HOM05D005638 ORTHO05D006913 2.5e-160 569.3 410 71.0
MD16G1034700 Malus domestica HOM05D005638 ORTHO05D006913 2.5e-160 569.3 421 68.9
Medtr1g109100 Medicago truncatula HOM05D005638 ORTHO05D006913 4.2e-160 568.5 411 69.1
PGR119G2299 Punica granatum HOM05D005638 ORTHO05D006913 1.2e-159 567.0 414 67.6
Psat6g222760 Pisum sativum HOM05D005638 ORTHO05D006913 1.6e-159 566.6 412 69.2
Sc14g0007070 Simmondsia chinensis HOM05D005638 ORTHO05D006913 2.7e-159 565.8 412 69.4
arahy.Tifrunner.gnm1.ann1.NRC6UQ Arachis hypogaea HOM05D005638 ORTHO05D006913 6.0e-159 564.7 418 67.2
CARHR143670 Cardamine hirsuta HOM05D005638 ORTHO05D006913 1.8e-158 563.1 409 67.5
arahy.Tifrunner.gnm1.ann1.CLD3MC Arachis hypogaea HOM05D005638 ORTHO05D006913 3.0e-158 562.4 418 67.0
Lj2C166G5 Lonicera japonica HOM05D005638 ORTHO05D006913 3.0e-158 562.4 447 65.8
Phvul.007G034200 Phaseolus vulgaris HOM05D005638 ORTHO05D006913 3.9e-158 562.0 409 67.7
FAN07G1772 Fragaria x ananassa HOM05D005638 ORTHO05D006913 4.3e-157 558.5 458 63.5
Lalb_Chr02g0145641 Lupinus albus HOM05D005638 ORTHO05D006913 4.8e-156 555.1 408 65.9
AL5G10070 Arabidopsis lyrata HOM05D005638 ORTHO05D006913 6.3e-156 554.7 409 67.0
Lj5g0007245 Lotus japonicus HOM05D005638 ORTHO05D006913 1.1e-155 553.9 402 68.2
Ca_30212_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 4.1e-155 552.0 400 69.5
THA.LOC104805050 Tarenaya hassleriana HOM05D005638 ORTHO05D006913 9.0e-155 550.8 416 66.3
Sp2g12590 Schrenkiella parvula HOM05D005638 ORTHO05D006913 3.4e-154 548.9 416 65.4
Carub.0005s0010 Capsella rubella HOM05D005638 ORTHO05D006913 4.5e-154 548.5 416 65.6
Glyma.10G268100 Glycine max HOM05D005638 ORTHO05D006913 1.3e-153 547.0 410 67.1
CiPaw.05G245200 Carya illinoinensis HOM05D005638 ORTHO05D006913 1.7e-153 546.6 416 67.3
Thhalv10000894m.g Eutrema salsugineum HOM05D005638 ORTHO05D006913 1.7e-153 546.6 419 65.4
Manes.10G073400 Manihot esculenta HOM05D005638 ORTHO05D006913 2.2e-153 546.2 415 66.3
BcaC06g31332 Brassica carinata HOM05D005638 ORTHO05D006913 2.9e-153 545.8 413 64.2
Glyma.20G123000 Glycine max HOM05D005638 ORTHO05D006913 4.2e-152 542.0 410 66.3
A06p44660 Brassica napus HOM05D005638 ORTHO05D006913 7.9e-151 537.7 442 62.0
PSO017G2298 Papaver somniferum HOM05D005638 ORTHO05D006913 1.8e-150 536.6 408 65.7
HPP92_020141 Vanilla planifolia HOM05D005638 ORTHO05D006913 1.5e-149 533.5 412 63.3
AT2G01120 Arabidopsis thaliana HOM05D005638 ORTHO05D006913 1.9e-149 533.1 410 64.9
Os01g0683400 Oryza sativa ssp. japonica HOM05D005638 ORTHO05D006913 5.7e-149 531.6 455 59.8
C07p31590 Brassica napus HOM05D005638 ORTHO05D006913 7.4e-149 531.2 442 60.9
BcaC06g34215 Brassica carinata HOM05D005638 ORTHO05D006913 1.3e-148 530.4 442 60.6
PSO478G2841 Papaver somniferum HOM05D005638 ORTHO05D006913 1.3e-148 530.4 408 64.7
PSO782G2730 Papaver somniferum HOM05D005638 ORTHO05D006913 6.3e-148 528.1 408 64.0
Duzib106G1906 Durio zibethinus HOM05D005638 ORTHO05D006913 3.1e-147 525.8 405 66.2
Aa31LG2G8760 Aethionema arabicum HOM05D005638 ORTHO05D006913 4.1e-147 525.4 413 63.7
Nitab4.5_0013146g0020 Nicotiana tabacum HOM05D005638 ORTHO05D006913 4.1e-147 525.4 483 58.2
FAN22G2072 Fragaria x ananassa HOM05D005638 ORTHO05D006913 2.6e-146 522.7 445 62.0
AUR62042716 Chenopodium quinoa HOM05D005638 ORTHO05D006913 7.2e-144 514.6 442 61.3
SalBow8G2600 Salvia bowleyana HOM05D005638 ORTHO05D006913 3.6e-143 512.3 418 63.2
ATR0691G289 Amborella trichopoda HOM05D005638 ORTHO05D006913 5.1e-142 508.4 412 63.8
FAN17G1216 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.3e-140 503.8 436 61.5
Dinv16164 Davidia involucrata HOM05D005638 ORTHO05D006913 4.8e-140 501.9 346 72.3
Cpa.g.sc65.90 Carica papaya HOM05D005638 ORTHO05D006913 5.3e-139 498.4 382 66.8
unitig_52.g17425 Utricularia gibba HOM05D005638 ORTHO05D006913 4.5e-138 495.4 420 61.9
Atru.chr11.333 Acer truncatum HOM05D005638 ORTHO05D006913 1.0e-137 494.2 332 72.9
SEGI_39107 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 2.2e-137 493.0 413 59.1
BcaB07g30423 Brassica carinata HOM05D005638 ORTHO05D006913 1.9e-136 490.0 436 58.9
BraA06t27339Z Brassica rapa HOM05D005638 ORTHO05D006913 5.5e-136 488.4 419 59.2
Gohir.D13G001900 Gossypium hirsutum HOM05D005638 ORTHO05D006913 6.7e-134 481.5 414 61.1
MBI10_g06749_MAGBIO Magnolia biondii HOM05D005638 ORTHO05D006913 2.2e-132 476.5 360 65.6
Zm00001eb156550 Zea mays HOM05D005638 ORTHO05D006913 1.7e-129 466.8 410 60.0
Atru.chr11.340 Acer truncatum HOM05D005638 ORTHO05D006913 3.2e-128 462.6 303 74.6
VMungo0720G2401 Vigna mungo HOM05D005638 ORTHO05D006913 1.7e-124 450.3 460 53.9
Rhsim11G0032100 Rhododendron simsii HOM05D005638 ORTHO05D006913 2.8e-116 422.9 285 74.4
TAR622G0052 Trochodendron aralioides HOM05D005638 ORTHO05D006913 3.5e-114 416.0 308 69.2
Dinv04905 Davidia involucrata HOM05D005638 ORTHO05D006913 1.1e-112 411.0 413 54.5
Ah.03g138510 Amaranthus hybridus HOM05D005638 ORTHO05D006913 4.3e-104 382.5 283 69.3
Mapoly0031s0066 Marchantia polymorpha HOM05D005638 ORTHO05D006913 4.7e-103 379.0 416 50.2
CBR_g38777 Chara braunii HOM05D005638 ORTHO05D006913 1.3e-100 370.9 425 47.8
SGA_v2.0_scaffold170G38821 Striga asiatica HOM05D005638 ORTHO05D006913 6.4e-100 368.6 261 70.9
Pp3c16_11150 Physcomitrium patens HOM05D005638 ORTHO05D006913 2.4e-99 366.7 421 46.8
Hma1.2p1_0882F.1_g232170 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 7.8e-98 361.7 208 85.1
Cfa015815 Carpinus fangiana HOM05D005638 ORTHO05D006913 7.3e-96 355.1 212 82.5
Ca_23705_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 3.6e-95 352.8 233 76.0
TPR.G31713 Trifolium pratense HOM05D005638 ORTHO05D006913 6.8e-94 348.6 264 67.0
A02p31700 Brassica napus HOM05D005638 ORTHO05D006913 7.8e-82 308.5 318 54.1
AUR62014211 Chenopodium quinoa HOM05D005638 ORTHO05D006913 7.8e-82 308.5 357 50.1
AagrBONN_evm.TU.Sc2ySwM_344.3309 Anthoceros agrestis HOM05D005638 ORTHO05D006913 2.9e-76 290.0 364 46.2
BcaC03g16999 Brassica carinata HOM05D005638 ORTHO05D006913 1.1e-75 288.1 242 59.5
C02p49080 Brassica napus HOM05D005638 ORTHO05D006913 2.8e-71 273.5 314 47.8
BolC2t10998H Brassica oleracea HOM05D005638 ORTHO05D006913 7.1e-67 258.8 252 52.8
PSO170G3371 Papaver somniferum HOM05D005638 ORTHO05D006913 2.5e-64 250.4 225 56.4
Thecc.06G067600 Theobroma cacao HOM05D005638 ORTHO05D006913 1.3e-55 221.5 138 76.8
PRCOL_00001621 Prasinoderma coloniale HOM05D005638 ORTHO05D006913 2.1e-55 220.7 403 36.0
MD13G1032700 Malus domestica HOM05D005638 ORTHO05D006913 1.2e-53 214.9 166 63.3
CDE11G0817 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 8.4e-52 208.8 125 80.0
Hma1.2p1_0882F.1_g232190 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 3.2e-51 206.8 137 72.3
MD13G1032600 Malus domestica HOM05D005638 ORTHO05D006913 1.6e-50 204.5 154 66.2
SEGI_20204 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 8.7e-49 198.7 179 53.6
SMO351G0247 Selaginella moellendorffii HOM05D005638 ORTHO05D006913 9.3e-43 178.7 406 32.0
MCO02G007 Micromonas commoda HOM05D005638 ORTHO05D006913 6.3e-39 166.0 306 34.6
Rhsim11G0032000 Rhododendron simsii HOM05D005638 ORTHO05D006913 3.4e-37 160.2 149 59.1
BraA02t08176Z Brassica rapa HOM05D005638 ORTHO05D006913 2.0e-32 144.4 108 69.4
TPR.G15740 Trifolium pratense HOM05D005638 ORTHO05D006913 1.1e-30 138.7 87 80.5
CDE11G0802 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 3.4e-29 133.7 101 66.3
TPR.G7417 Trifolium pratense HOM05D005638 ORTHO05D006913 5.5e-27 126.3 96 66.7
Cfa022174 Carpinus fangiana HOM05D005638 ORTHO05D006913 2.2e-23 114.4 370 28.9
SEGI_29357 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 4.1e-22 110.2 96 52.1
Rhsim09G0101800 Rhododendron simsii HOM05D005638 ORTHO05D006913 2.0e-21 107.8 114 56.1
Cre17.g726500 Chlamydomonas reinhardtii HOM05D005638 ORTHO05D006913 4.2e-19 100.1 218 32.1
Rhsim09G0101700 Rhododendron simsii HOM05D005638 ORTHO05D006913 7.2e-19 99.4 79 62.0
FAN28G2655 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.4e-17 95.1 65 70.8
SHI16222 Sapria himalayana HOM05D000030 ORTHO05D007344 1.7e-15 88.2 54 77.8


User provided reference genes

Program Settings