Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 0.0e+00 1802.7 1059 100.0
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 5.2e-260 901.7 1164 58.1
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 2.1e-229 800.0 1107 59.9
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 2.3e-167 594.0 1135 50.0
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 2.3e-130 471.1 1217 41.6
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 6.6e-130 469.5 1215 42.6
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 1.2e-118 432.2 1091 42.0
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.6e-118 431.0 1334 38.2
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 6.0e-107 393.3 1068 37.6
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 6.2e-104 383.3 1393 37.8
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 5.8e-102 376.7 1275 38.3
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 1.4e-87 328.9 1371 35.0
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.4e-87 328.2 751 38.6
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 4.9e-85 320.5 1294 35.9
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 8.4e-85 319.7 732 37.7
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 8.4e-85 319.7 1424 34.2
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 2.1e-83 315.1 1319 35.4
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.3e-82 311.6 1224 37.0
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 5.1e-82 310.5 1258 36.6
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 6.7e-82 310.1 1147 36.9
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 7.4e-81 306.6 1034 36.3
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 2.0e-78 298.5 1220 35.1
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 2.9e-77 294.7 1153 32.6
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 1.0e-74 286.2 1189 35.8
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 5.1e-74 283.9 1386 33.4
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 8.8e-74 283.1 1329 34.4
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.4e-71 275.0 1389 32.8
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 4.1e-71 274.2 1082 35.2
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 5.3e-71 273.9 1338 30.9
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.2e-70 272.7 641 38.8
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 1.9e-68 265.4 1258 30.2
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 1.6e-67 262.3 1273 31.3
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.0e-66 259.6 614 36.8
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 3.0e-66 258.1 1357 33.7
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 3.9e-66 257.7 1522 32.3
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 6.7e-66 256.9 1056 33.2
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 4.4e-65 254.2 1078 32.4
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.7e-64 251.1 1100 35.1
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 6.3e-64 250.4 1288 35.1
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 6.3e-64 250.4 1288 35.1
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 7.0e-63 246.9 1348 34.1
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 2.6e-62 245.0 1053 33.0
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 2.8e-56 224.9 1314 32.6
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 7.7e-54 216.9 1117 30.4
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 2.1e-51 208.8 959 37.9
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 3.4e-49 201.4 769 31.6
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 4.8e-48 197.6 606 31.2
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.1e-47 196.4 469 36.7
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.1e-44 186.4 815 29.4
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 2.5e-44 185.3 1003 32.6
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.2e-41 176.4 1166 29.4
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 2.6e-41 175.3 1228 31.6
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 1.8e-39 169.1 768 28.3
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.2e-38 166.4 671 29.8
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 7.7e-38 163.7 1061 29.2
HanXRQChr07g0190851 Helianthus annuus HOM05D003962 ORTHO05D004714 2.9e-37 161.8 573 30.5
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 9.5e-36 156.8 1012 31.2
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.6e-35 154.8 1283 30.5
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 1.8e-34 152.5 617 30.1
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 2.3e-34 152.1 1121 30.3
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 3.0e-34 151.8 1113 31.7
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 4.0e-34 151.4 1187 29.3
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 5.2e-34 151.0 1161 27.5
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 8.9e-34 150.2 1065 32.2
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.8e-32 145.2 1117 31.3
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 3.7e-32 144.8 1142 30.8
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 4.9e-32 144.4 1105 30.0
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 2.4e-31 142.1 1074 30.4
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 9.2e-31 140.2 1116 30.8
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 2.7e-30 138.7 547 31.1
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 7.8e-30 137.1 1207 27.8
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 1.7e-29 136.0 1075 26.0
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 5.0e-29 134.4 1117 32.1
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 6.6e-29 134.0 995 30.2
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 8.6e-29 133.7 1193 30.2
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 3.3e-28 131.7 710 27.3
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 4.3e-28 131.3 1168 27.3
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 4.3e-28 131.3 502 29.3
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 9.5e-28 130.2 459 30.9
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 9.5e-28 130.2 1127 30.5
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 9.5e-28 130.2 935 32.5
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 2.8e-27 128.6 1119 29.5
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 3.6e-27 128.3 1142 29.1
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 4.7e-27 127.9 1168 29.4
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 8.0e-27 127.1 1252 30.5
vmacro11466 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.4e-26 126.3 328 40.9
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 5.2e-26 124.4 1195 28.2
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 5.2e-26 124.4 1171 30.0
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 8.9e-26 123.6 654 30.4
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 8.9e-26 123.6 654 30.4
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 8.9e-26 123.6 1207 27.1
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 2.0e-25 122.5 654 30.3
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.6e-25 122.1 1147 29.4
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 3.4e-25 121.7 1214 29.7
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 4.4e-25 121.3 1090 25.6
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 9.8e-25 120.2 1282 30.0
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 9.8e-25 120.2 1085 30.0
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 2.9e-24 118.6 1219 26.3
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 6.4e-24 117.5 1179 29.8
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 6.4e-24 117.5 1024 28.4
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 1.4e-23 116.3 859 27.0
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 2.4e-23 115.5 1199 27.8
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 7.0e-23 114.0 716 26.3
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 7.0e-23 114.0 1156 26.1
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 1.2e-22 113.2 665 29.3
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 2.0e-22 112.5 1148 29.2
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 3.5e-22 111.7 1011 31.3
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 4.6e-22 111.3 1074 28.9
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 4.6e-22 111.3 659 29.4
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 6.0e-22 110.9 1194 29.0
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 1.0e-21 110.2 1220 25.6
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 1.3e-21 109.8 721 27.0
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 1.3e-21 109.8 1088 32.5
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 2.3e-21 109.0 1233 30.3
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 3.0e-21 108.6 722 24.9
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 3.9e-21 108.2 654 29.1
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 7.3e-20 104.0 1166 30.9
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 4.7e-19 101.3 1134 27.9
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.4e-18 99.8 528 31.6
vmacro11360 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.4e-18 99.8 373 35.4
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 1.8e-18 99.4 1196 28.8
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 4.0e-18 98.2 1179 28.2
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 8.9e-18 97.1 1085 31.5
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 9.8e-17 93.6 1039 29.5
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.2e-16 92.4 1039 29.4
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 2.9e-16 92.0 576 28.0
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 3.7e-16 91.7 1122 24.0
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 4.9e-16 91.3 1282 27.9
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 4.9e-16 91.3 1039 29.4
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 4.9e-16 91.3 1035 29.3
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 8.3e-16 90.5 1182 27.6
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 1.1e-15 90.1 1124 28.3
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.4e-15 89.7 1035 29.5
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 1.9e-15 89.4 1174 28.8
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.4e-15 89.0 1041 29.5
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 4.6e-14 84.7 1074 30.1
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 1.0e-13 83.6 1014 26.0
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.0e-13 83.6 1204 27.2
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 1.3e-13 83.2 1083 30.5
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.7e-13 82.8 1215 26.3
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 2.3e-13 82.4 970 30.0
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.5e-12 79.7 1080 31.8
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 7.3e-12 77.4 1045 28.9
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 1.2e-11 76.6 455 26.8
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.4e-10 73.2 687 24.0
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 2.0e-09 69.3 1134 29.5
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 3.4e-09 68.6 177 30.5
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 3.4e-09 68.6 177 30.5
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 5.8e-09 67.8 1133 28.9
unitig_0.g2843 Utricularia gibba HOM05D047057 ORTHO05D004714 9.2e-07 60.5 233 29.2
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.6e-06 59.7 702 24.6
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 2.1e-06 59.3 1173 29.6
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 2.7e-06 58.9 1062 29.4


User provided reference genes

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