Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0534461 Helianthus annuus HOM05D004708 ORTHO05D005573 5.2e-47 190.7 93 100.0
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 2.3e-31 138.7 75 90.7
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 1.3e-26 122.9 75 78.7
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 1.1e-23 113.2 75 76.0
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 2.6e-22 108.6 60 85.0
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 5.8e-22 107.5 69 72.5
Gohir.D12G064000 Gossypium hirsutum HOM05D004708 ORTHO05D005573 5.8e-22 107.5 69 72.5
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 7.6e-22 107.1 62 80.6
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 7.6e-22 107.1 74 68.9
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 9.9e-22 106.7 54 87.0
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 2.2e-21 105.5 59 81.4
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 2.9e-21 105.1 74 68.9
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 3.7e-21 104.8 62 80.6
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 4.9e-21 104.4 52 90.4
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 4.9e-21 104.4 59 79.7
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 4.9e-21 104.4 59 83.1
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 6.4e-21 104.0 59 79.7
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 6.4e-21 104.0 65 75.4
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 8.4e-21 103.6 67 71.6
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 8.4e-21 103.6 74 67.6
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 1.1e-20 103.2 57 82.5
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 1.1e-20 103.2 59 79.7
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 1.1e-20 103.2 59 78.0
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 1.1e-20 103.2 63 74.6
CAN.G53.14 Capsicum annuum HOM05D004708 ORTHO05D005573 1.4e-20 102.8 61 77.0
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 1.4e-20 102.8 59 81.4
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 1.4e-20 102.8 65 73.8
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 1.9e-20 102.4 54 85.2
Dinv39998 Davidia involucrata HOM05D004708 ORTHO05D005573 1.9e-20 102.4 74 68.9
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 1.9e-20 102.4 74 64.9
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 1.9e-20 102.4 74 68.9
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 3.2e-20 101.7 63 77.8
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 3.2e-20 101.7 57 80.7
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 3.2e-20 101.7 56 82.1
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 3.2e-20 101.7 74 66.2
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 3.2e-20 101.7 74 70.3
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 3.2e-20 101.7 67 71.6
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 4.1e-20 101.3 52 88.5
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 4.1e-20 101.3 67 70.1
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 4.1e-20 101.3 69 68.1
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 4.1e-20 101.3 74 68.9
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 5.4e-20 100.9 74 67.6
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 5.4e-20 100.9 58 77.6
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 5.4e-20 100.9 73 67.1
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 7.1e-20 100.5 65 69.2
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 7.1e-20 100.5 57 78.9
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 7.1e-20 100.5 59 78.0
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 9.2e-20 100.1 54 83.3
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 9.2e-20 100.1 54 83.3
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 1.2e-19 99.8 54 85.2
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 1.2e-19 99.8 74 66.2
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 1.2e-19 99.8 54 83.3
FAN26G2067 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.2e-19 99.8 54 81.5
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 1.2e-19 99.8 57 78.9
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 1.2e-19 99.8 57 78.9
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 1.6e-19 99.4 66 72.7
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 1.6e-19 99.4 74 67.6
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 1.6e-19 99.4 57 78.9
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 1.6e-19 99.4 57 78.9
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 1.6e-19 99.4 75 65.3
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 1.6e-19 99.4 59 78.0
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 2.1e-19 99.0 63 74.6
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 2.7e-19 98.6 67 70.1
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 2.7e-19 98.6 74 63.5
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 3.5e-19 98.2 59 78.0
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 3.5e-19 98.2 54 79.6
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 4.6e-19 97.8 67 68.7
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 6.0e-19 97.4 57 77.2
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 6.0e-19 97.4 59 76.3
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 7.8e-19 97.1 59 74.6
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 7.8e-19 97.1 59 76.3
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 1.3e-18 96.3 57 71.9
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 1.3e-18 96.3 55 74.5
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 1.7e-18 95.9 71 62.0
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 2.3e-18 95.5 73 63.0
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 2.3e-18 95.5 59 74.6
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 3.0e-18 95.1 50 84.0
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 3.0e-18 95.1 60 71.7
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 3.0e-18 95.1 60 71.7
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 3.0e-18 95.1 60 71.7
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 3.0e-18 95.1 54 79.6
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 3.9e-18 94.7 54 79.6
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 3.9e-18 94.7 54 77.8
C09p13900 Brassica napus HOM05D004708 ORTHO05D005573 3.9e-18 94.7 54 77.8
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 3.9e-18 94.7 54 77.8
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 6.6e-18 94.0 74 60.8
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 8.6e-18 93.6 54 77.8
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 8.6e-18 93.6 54 77.8
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 8.6e-18 93.6 54 77.8
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 8.6e-18 93.6 74 60.8
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 1.1e-17 93.2 59 74.6
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 1.1e-17 93.2 57 73.7
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 1.5e-17 92.8 57 73.7
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 1.9e-17 92.4 76 60.5
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 2.5e-17 92.0 54 75.9
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 2.5e-17 92.0 59 72.9
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 2.5e-17 92.0 68 63.2
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 3.3e-17 91.7 74 59.5
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 3.3e-17 91.7 74 58.1
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 3.3e-17 91.7 58 72.4
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 3.3e-17 91.7 56 75.0
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 4.3e-17 91.3 52 76.9
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 4.3e-17 91.3 52 76.9
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 4.3e-17 91.3 59 67.8
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 4.3e-17 91.3 55 74.5
Glyma.02G276900 Glycine max HOM05D004708 ORTHO05D005573 5.6e-17 90.9 70 61.4
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 5.6e-17 90.9 74 56.8
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 1.2e-16 89.7 69 59.4
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 1.2e-16 89.7 64 65.6
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 1.6e-16 89.4 57 75.4
Peaxi162Scf00130g00618 Petunia axillaris HOM05D004708 ORTHO05D005573 1.6e-16 89.4 74 58.1
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 2.1e-16 89.0 69 66.7
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 4.7e-16 87.8 49 77.6
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 8.1e-16 87.0 68 63.2
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 1.4e-15 86.3 51 74.5
Nn7g38122 Nelumbo nucifera HOM05D004708 ORTHO05D005573 1.4e-15 86.3 48 77.1
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 1.4e-15 86.3 56 73.2
FvH4_3g26020 Fragaria vesca HOM05D004708 ORTHO05D005573 4.0e-15 84.7 59 64.4
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 5.2e-15 84.3 59 64.4
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 6.8e-15 84.0 59 67.8
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 8.9e-15 83.6 59 62.7
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 8.9e-15 83.6 51 70.6
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 1.2e-14 83.2 63 63.5
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 2.0e-14 82.4 48 75.0
Mapoly0065s0018 Marchantia polymorpha HOM05D004708 ORTHO05D005573 2.6e-14 82.0 48 72.9
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 4.9e-13 77.8 52 61.5
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 4.9e-13 77.8 52 61.5
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 1.1e-12 76.6 49 67.3
Lj2A454G55 Lonicera japonica HOM05D004708 ORTHO05D005573 7.1e-12 73.9 55 70.9
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 3.0e-10 68.6 47 63.8
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 6.6e-10 67.4 82 42.7
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 1.6e-08 62.8 45 66.7
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 1.2e-06 56.6 37 70.3
CARHR108850 Cardamine hirsuta HOM05D004708 ORTHO05D005573 1.5e-06 56.2 28 85.7


User provided reference genes

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