Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0533931 Helianthus annuus HOM05D003548 ORTHO05D004066 6.5e-175 618.2 600 100.0
ECA246G0635 Erigeron canadensis HOM05D003548 ORTHO05D004066 2.4e-108 397.1 631 76.7
HanXRQChr06g0166281 Helianthus annuus HOM05D003548 ORTHO05D004066 1.2e-83 315.1 555 78.9
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 2.3e-55 221.1 671 63.6
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 3.9e-55 220.3 685 61.6
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 3.9e-55 220.3 685 61.6
Hma1.2p1_0216F.1_g091270 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 7.4e-54 216.1 682 62.6
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 1.3e-53 215.3 680 61.9
CAN.G532.68 Capsicum annuum HOM05D003548 ORTHO05D004066 5.3e-52 209.9 681 62.1
ECA233G1322 Erigeron canadensis HOM05D003548 ORTHO05D004066 3.5e-51 207.2 573 68.9
Cc08_g15520 Coffea canephora HOM05D003548 ORTHO05D004066 1.9e-49 201.4 670 61.3
Sopen08g030060 Solanum pennellii HOM05D003548 ORTHO05D004066 5.5e-49 199.9 684 62.4
Nitab4.5_0002944g0150 Nicotiana tabacum HOM05D003548 ORTHO05D004066 4.8e-45 186.8 642 63.4
Dinv38885 Davidia involucrata HOM05D003548 ORTHO05D004066 1.4e-44 185.3 670 62.7
Dinv37570 Davidia involucrata HOM05D003548 ORTHO05D004066 1.2e-43 182.2 693 60.8
MD06G1096100 Malus domestica HOM05D003548 ORTHO05D004066 1.2e-43 182.2 664 61.0
QL02p032544 Quercus lobata HOM05D003548 ORTHO05D004066 7.7e-43 179.5 297 42.8
DCAR_006852 Daucus carota HOM05D003548 ORTHO05D004066 1.0e-42 179.1 293 44.0
Migut.A00697 Erythranthe guttata HOM05D003548 ORTHO05D004066 1.3e-42 178.7 640 62.2
Solyc08g081760.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 5.0e-42 176.8 668 62.1
Phvul.002G294600 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 6.5e-42 176.4 676 59.5
Oeu042375.2 Olea europaea HOM05D003548 ORTHO05D004066 1.1e-41 175.6 294 43.5
CANSAT21G0595 Cannabis sativa HOM05D003548 ORTHO05D004066 4.7e-40 170.2 298 44.0
MD14G1116300 Malus domestica HOM05D003548 ORTHO05D004066 8.0e-40 169.5 296 42.9
Prupe.5G110700 Prunus persica HOM05D003548 ORTHO05D004066 8.0e-40 169.5 299 41.8
Peaxi162Scf00102g01614 Petunia axillaris HOM05D003548 ORTHO05D004066 1.0e-39 169.1 685 59.0
Oeu059583.1 Olea europaea HOM05D003548 ORTHO05D004066 4.0e-39 167.2 294 42.5
SalBow1G7748 Salvia bowleyana HOM05D003548 ORTHO05D004066 4.4e-38 163.7 641 61.2
Solyc08g008180.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 5.7e-38 163.3 676 58.4
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 9.8e-38 162.5 300 42.0
TWI15G1126 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 1.7e-37 161.8 297 40.1
Medtr8g099105 Medicago truncatula HOM05D003548 ORTHO05D004066 2.8e-37 161.0 298 39.9
Sopen08g004030 Solanum pennellii HOM05D003548 ORTHO05D004066 2.8e-37 161.0 675 57.9
Sabra01G0072500 Salix brachista HOM05D003548 ORTHO05D004066 4.9e-37 160.2 688 59.0
Cfa012267 Carpinus fangiana HOM05D003548 ORTHO05D004066 8.3e-37 159.5 684 59.1
Potri.001G097200 Populus trichocarpa HOM05D003548 ORTHO05D004066 8.3e-37 159.5 667 60.4
TWI81G0889 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 1.1e-36 159.1 298 38.3
FAN13G0102 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.4e-36 158.7 314 39.2
PGSC0003DMG400012172 Solanum tuberosum HOM05D003548 ORTHO05D004066 2.4e-36 157.9 686 59.2
ClCG01G002150 Citrullus lanatus HOM05D003548 ORTHO05D004066 3.1e-36 157.5 302 40.4
Haze_08718 Corylus avellana HOM05D003548 ORTHO05D004066 3.1e-36 157.5 664 60.7
Thecc.03G289200 Theobroma cacao HOM05D003548 ORTHO05D004066 3.1e-36 157.5 669 58.7
Eucgr.E00807 Eucalyptus grandis HOM05D003548 ORTHO05D004066 7.0e-36 156.4 670 57.9
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.2e-35 155.6 294 42.9
MELO3C005727.2 Cucumis melo HOM05D003548 ORTHO05D004066 1.6e-35 155.2 302 39.7
CsaV3_5G002270 Cucumis sativus L. HOM05D003548 ORTHO05D004066 1.6e-35 155.2 302 39.7
RcHm_v2.0_Chr7g0196081 Rosa chinensis HOM05D003548 ORTHO05D004066 1.6e-35 155.2 303 39.6
CiPaw.12G087100 Carya illinoinensis HOM05D003548 ORTHO05D004066 2.0e-35 154.8 293 41.0
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 2.7e-35 154.5 668 59.0
SalBow1G6595 Salvia bowleyana HOM05D003548 ORTHO05D004066 2.7e-35 154.5 291 40.9
FvH4_5g03650 Fragaria vesca HOM05D003548 ORTHO05D004066 7.7e-35 152.9 680 58.7
TWI60G0243 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 1.0e-34 152.5 297 38.4
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 2.3e-34 151.4 651 59.8
FAN13G1218 Fragaria x ananassa HOM05D003548 ORTHO05D004066 3.8e-34 150.6 680 57.6
SGA_v2.0_scaffold96G28999 Striga asiatica HOM05D003548 ORTHO05D004066 5.0e-34 150.2 260 41.9
Glyma.05G213300 Glycine max HOM05D003548 ORTHO05D004066 6.6e-34 149.8 695 57.4
CiPaw.11G126900 Carya illinoinensis HOM05D003548 ORTHO05D004066 1.5e-33 148.7 297 38.7
FAN04G2241 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.5e-33 148.7 312 35.9
Sed0010954 Sechium edule HOM05D003548 ORTHO05D004066 1.5e-33 148.7 304 39.5
Glyma.01G223400 Glycine max HOM05D003548 ORTHO05D004066 1.9e-33 148.3 295 41.4
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 1.9e-33 148.3 299 38.5
Glyma.08G019800 Glycine max HOM05D003548 ORTHO05D004066 5.5e-33 146.7 683 57.8
VMungo0251G1700 Vigna mungo HOM05D003548 ORTHO05D004066 7.2e-33 146.4 299 38.5
FAN04G1462 Fragaria x ananassa HOM05D003548 ORTHO05D004066 9.5e-33 146.0 677 57.5
Gohir.A09G191100 Gossypium hirsutum HOM05D003548 ORTHO05D004066 9.5e-33 146.0 689 57.0
Sed0003878 Sechium edule HOM05D003548 ORTHO05D004066 9.5e-33 146.0 302 40.4
TPR.G3387 Trifolium pratense HOM05D000059 ORTHO05D004066 1.6e-32 145.2 297 38.4
COL.COLO4_08334 Corchorus olitorius HOM05D003548 ORTHO05D004066 2.1e-32 144.8 656 58.7
Nitab4.5_0005339g0010 Nicotiana tabacum HOM05D003548 ORTHO05D004066 2.1e-32 144.8 649 60.4
Sp2g00590 Schrenkiella parvula HOM05D003548 ORTHO05D004066 2.1e-32 144.8 302 39.1
Lj4g0009292 Lotus japonicus HOM05D003548 ORTHO05D004066 4.7e-32 143.7 677 57.2
Gorai.006G208300 Gossypium raimondii HOM05D003548 ORTHO05D004066 6.1e-32 143.3 689 56.9
Gohir.D09G185600 Gossypium hirsutum HOM05D003548 ORTHO05D004066 8.0e-32 142.9 689 56.9
PGSC0003DMG400005830 Solanum tuberosum HOM05D003548 ORTHO05D004066 8.0e-32 142.9 646 58.7
Duzib205G0585 Durio zibethinus HOM05D003548 ORTHO05D004066 1.8e-31 141.7 689 58.2
PGR031G0552 Punica granatum HOM05D003548 ORTHO05D004066 4.4e-30 137.1 280 36.8
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 1.7e-29 135.2 298 38.6
MBI07_g38645_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.7e-29 135.2 294 37.4
FAN18G1037 Fragaria x ananassa HOM05D003548 ORTHO05D004066 2.9e-29 134.4 689 56.9
Gohir.A02G103700 Gossypium hirsutum HOM05D003548 ORTHO05D004066 2.9e-29 134.4 683 56.8
Oeu042369.1 Olea europaea HOM05D003548 ORTHO05D004066 2.9e-29 134.4 251 41.0
Potri.003G134200 Populus trichocarpa HOM05D003548 ORTHO05D004066 2.9e-29 134.4 299 37.5
unitig_32.g11608 Utricularia gibba HOM05D003548 ORTHO05D004066 1.1e-28 132.5 295 38.0
TAR629G2865 Trochodendron aralioides HOM05D003548 ORTHO05D004066 1.8e-28 131.7 293 36.5
Gorai.003G083700 Gossypium raimondii HOM05D003548 ORTHO05D004066 5.4e-28 130.2 683 56.7
PGR042G3215 Punica granatum HOM05D003548 ORTHO05D004066 5.4e-28 130.2 240 40.8
arahy.Tifrunner.gnm1.ann1.59PT6M Arachis hypogaea HOM05D003548 ORTHO05D004066 9.2e-28 129.4 690 56.4
Thhalv10023333m.g Eutrema salsugineum HOM05D003548 ORTHO05D004066 9.2e-28 129.4 297 37.0
Duzib084G0464 Durio zibethinus HOM05D003548 ORTHO05D004066 2.7e-27 127.9 666 58.1
arahy.Tifrunner.gnm1.ann1.36D870 Arachis hypogaea HOM05D003548 ORTHO05D004066 7.8e-27 126.3 690 56.5
Cpa.g.sc321.2 Carica papaya HOM05D003548 ORTHO05D004066 1.0e-26 125.9 130 54.6
THA.LOC104809354 Tarenaya hassleriana HOM05D003548 ORTHO05D004066 1.3e-26 125.6 294 36.1
AL2G10890 Arabidopsis lyrata HOM05D003548 ORTHO05D004066 2.9e-26 124.4 291 37.1
GSVIVG01028755001 Vitis vinifera HOM05D003548 ORTHO05D004066 3.9e-26 124.0 268 37.7
Ca_10964_v3 Cicer arietinum L. HOM05D003548 ORTHO05D004066 6.6e-26 123.2 286 36.0
Oeu063042.1 Olea europaea HOM05D003548 ORTHO05D004066 8.6e-26 122.9 643 58.2
Duzib068G0600 Durio zibethinus HOM05D003548 ORTHO05D004066 1.1e-25 122.5 658 57.3
AT1G64140 Arabidopsis thaliana HOM05D003548 ORTHO05D004066 1.5e-25 122.1 296 36.5
MSTRG.25643 Avicennia marina HOM05D003548 ORTHO05D004066 1.9e-25 121.7 677 57.0
TAR636G0920 Trochodendron aralioides HOM05D003548 ORTHO05D004066 1.9e-25 121.7 299 37.8
Gohir.D03G080300 Gossypium hirsutum HOM05D003548 ORTHO05D004066 2.5e-25 121.3 299 34.8
VMungo1215G2254 Vigna mungo HOM05D003548 ORTHO05D004066 1.2e-24 119.0 252 39.7
Carub.0002s0067 Capsella rubella HOM05D003548 ORTHO05D004066 1.6e-24 118.6 295 37.3
Psat7g029120 Pisum sativum HOM05D003548 ORTHO05D004066 1.6e-24 118.6 675 56.1
Manes.02G014900 Manihot esculenta HOM05D003548 ORTHO05D004066 6.1e-24 116.7 297 34.0
MSTRG.11944 Avicennia marina HOM05D003548 ORTHO05D004066 1.8e-23 115.2 291 37.5
Ciclev10019140m.g Citrus clementina HOM05D003548 ORTHO05D004066 2.3e-23 114.8 299 33.1
Lalb_Chr16g0390341 Lupinus albus HOM05D003548 ORTHO05D004066 2.3e-23 114.8 685 55.3
Dinv28355 Davidia involucrata HOM05D003548 ORTHO05D004066 8.9e-23 112.8 282 34.8
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 3.4e-22 110.9 301 32.9
BcaC04g22534 Brassica carinata HOM05D003548 ORTHO05D004066 5.8e-22 110.2 295 34.6
C09p18070 Brassica napus HOM05D003548 ORTHO05D004066 5.8e-22 110.2 295 34.6
BolC9t54704H Brassica oleracea HOM05D003548 ORTHO05D004066 7.5e-22 109.8 296 34.5
Aqoxy7G00221 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 9.8e-22 109.4 253 34.4
AUR62019776 Chenopodium quinoa HOM05D003548 ORTHO05D004066 9.8e-22 109.4 299 33.1
PSO063G3847 Papaver somniferum HOM05D003548 ORTHO05D004066 9.8e-22 109.4 677 55.8
Sc01g0009980 Simmondsia chinensis HOM05D003548 ORTHO05D004066 1.7e-21 108.6 301 32.6
HPP92_006483 Vanilla planifolia HOM05D003548 ORTHO05D004066 4.9e-21 107.1 297 35.4
BcaB07g31439 Brassica carinata HOM05D003548 ORTHO05D008486 6.4e-21 106.7 301 34.6
Nitab4.5_0007898g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 5.4e-20 103.6 151 45.0
unitig_748.g7420 Utricularia gibba HOM05D003548 ORTHO05D004066 9.2e-20 102.8 230 36.5
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 1.6e-19 102.1 301 32.2
Phvul.002G161400 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 1.6e-19 102.1 259 35.5
A09p14120 Brassica napus HOM05D003548 ORTHO05D004066 2.0e-19 101.7 295 34.2
GSVIVG01003094001 Vitis vinifera HOM05D003548 ORTHO05D004066 3.5e-19 100.9 125 48.8
CSS0034195 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 4.6e-19 100.5 150 44.7
BraA09t37059Z Brassica rapa HOM05D003548 ORTHO05D004066 1.0e-18 99.4 298 33.9
Nitab4.5_0000966g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 1.3e-18 99.0 151 43.0
PGSC0003DMG400028194 Solanum tuberosum HOM05D003548 ORTHO05D004066 3.0e-18 97.8 571 49.7
Sabra03G0096600 Salix brachista HOM05D003548 ORTHO05D004066 6.6e-18 96.7 675 54.4
Rhsim02G0237200 Rhododendron simsii HOM05D003548 ORTHO05D004066 4.3e-17 94.0 657 55.3
HPP92_023971 Vanilla planifolia HOM05D003548 ORTHO05D004066 2.1e-16 91.7 229 40.2
Zm00001eb159560 Zea mays HOM05D003548 ORTHO05D004066 2.1e-16 91.7 608 58.9
BcaC04g22535 Brassica carinata HOM05D003548 ORTHO05D004066 2.8e-16 91.3 126 48.4
Os01g0621900 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 2.8e-16 91.3 302 33.4
Cc02_g02080 Coffea canephora HOM05D003548 ORTHO05D004066 2.3e-15 88.2 233 33.0
PSO170G6721 Papaver somniferum HOM05D003548 ORTHO05D004066 4.0e-15 87.4 676 54.0
Hund11425 Selenicereus undatus HOM05D000154 ORTHO05D004066 5.2e-15 87.0 214 34.1
Gohir.D03G080200 Gossypium hirsutum HOM05D003548 ORTHO05D004066 6.8e-15 86.7 150 40.0
AUR62010777 Chenopodium quinoa HOM05D003548 ORTHO05D004066 1.2e-14 85.9 291 30.2
Lj2P175T19 Lonicera japonica HOM05D003548 ORTHO05D004066 1.5e-14 85.5 492 69.9
Ah.12g052120 Amaranthus hybridus HOM05D000265 ORTHO05D000161 3.4e-14 84.3 289 29.1
Rhsim02G0237300 Rhododendron simsii HOM05D003548 ORTHO05D004066 4.4e-14 84.0 134 41.8
Actinidia08610 Actinidia chinensis HOM05D003548 ORTHO05D004066 7.5e-14 83.2 273 30.4
CSS0041240 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 7.5e-14 83.2 295 30.5
CSS0049608 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 7.5e-14 83.2 295 30.5
CARHR046800 Cardamine hirsuta HOM05D003548 ORTHO05D004066 1.3e-13 82.4 275 32.4
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 1.7e-13 82.0 289 29.1
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 3.7e-13 80.9 294 31.3
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 4.9e-13 80.5 235 32.8
Migut.F01061 Erythranthe guttata HOM05D003548 ORTHO05D004066 1.4e-12 79.0 229 32.8
Eucgr.D01792 Eucalyptus grandis HOM05D003548 ORTHO05D004066 2.4e-12 78.2 156 37.8
CDE02G2034 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 3.2e-12 77.8 262 31.3
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 3.2e-12 77.8 235 33.6
Zm00001eb238000 Zea mays HOM05D003548 ORTHO05D004066 9.2e-12 76.3 241 31.5
Hma1.2p1_0142F.1_g064160 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 1.6e-11 75.5 276 28.6
Lsat_1_v5_gn_9_57161 Lactuca sativa HOM05D003548 ORTHO05D004066 2.7e-11 74.7 229 32.8
Zm00001eb344910 Zea mays HOM05D003548 ORTHO05D004066 2.7e-11 74.7 230 37.0
CDE04G3080 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 6.0e-11 73.6 185 34.6
Os02g0259100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 6.0e-11 73.6 250 32.4
Aa31LG2G1190 Aethionema arabicum HOM05D003548 ORTHO05D004066 1.0e-10 72.8 292 30.1
Zm00001eb204020 Zea mays HOM05D003548 ORTHO05D004066 1.0e-10 72.8 263 30.4
EL10Ac5g12854 Beta vulgaris HOM05D003548 ORTHO05D004066 1.3e-10 72.4 291 28.2
BcaB07g31525 Brassica carinata HOM05D003548 ORTHO05D004066 3.0e-10 71.2 293 29.7
SHI07056 Sapria himalayana HOM05D003548 ORTHO05D004066 8.6e-10 69.7 270 33.0
AUR62021071 Chenopodium quinoa HOM05D003548 ORTHO05D004066 1.1e-09 69.3 252 30.2
vmacro06591 Vaccinium macrocarpon HOM05D003548 ORTHO05D004066 1.9e-09 68.6 252 30.2
Ah.13g069690 Amaranthus hybridus HOM05D003548 ORTHO05D004066 2.5e-09 68.2 262 31.3
AUR62031460 Chenopodium quinoa HOM05D003548 ORTHO05D004066 2.5e-09 68.2 252 29.4
ECA232G3387 Erigeron canadensis HOM05D003548 ORTHO05D004066 5.6e-09 67.0 220 30.0
ATR1131G034 Amborella trichopoda HOM05D003548 ORTHO05D004066 9.5e-09 66.2 124 42.7
Oeu003337.1 Olea europaea HOM05D003548 ORTHO05D004066 1.2e-08 65.9 229 32.3
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 3.6e-08 64.3 250 31.2
C09p17010 Brassica napus HOM05D003548 ORTHO05D004066 4.7e-08 63.9 290 29.0
HanXRQChr15g0493381 Helianthus annuus HOM05D003548 ORTHO05D004066 8.1e-08 63.2 210 30.0
Rhsim03G0196900 Rhododendron simsii HOM05D003548 ORTHO05D004066 8.1e-08 63.2 284 29.6
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 1.4e-07 62.4 280 28.9
Os06g0523100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 2.3e-07 61.6 107 37.4
BolC9t54599H Brassica oleracea HOM05D003548 ORTHO05D004066 3.1e-07 61.2 142 34.5
EL10Ac3g05370 Beta vulgaris HOM05D003548 ORTHO05D004066 4.0e-07 60.8 215 29.8
BcaC04g22655 Brassica carinata HOM05D003548 ORTHO05D004066 4.0e-07 60.8 290 28.3
Lj1P1010T36 Lonicera japonica HOM05D003548 ORTHO05D004066 4.4e-06 57.4 133 33.1
MBI07_g06320_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 5.8e-06 57.0 63 52.4
Sc13g0009440 Simmondsia chinensis HOM05D003548 ORTHO05D004066 7.6e-06 56.6 224 32.6
SGA_v2.0_scaffold192G40598 Striga asiatica HOM05D003548 ORTHO05D004066 9.9e-06 56.2 153 30.7


User provided reference genes

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