Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0533241 Helianthus annuus HOM05D006400 ORTHO05D008039 3.6e-152 542.3 480 100.0
Dinv25846 Davidia involucrata HOM05D006400 ORTHO05D008039 3.7e-72 276.6 476 72.7
CSS0025678 Camellia sinensis var. sinensis HOM05D006400 ORTHO05D008039 7.0e-63 245.7 480 67.3
GSVIVG01007151001 Vitis vinifera HOM05D006400 ORTHO05D008039 7.3e-60 235.7 472 71.0
vmacro00015 Vaccinium macrocarpon HOM05D006400 ORTHO05D008039 8.0e-59 232.3 480 65.0
TAR628G0792 Trochodendron aralioides HOM05D006400 ORTHO05D008039 2.6e-57 227.3 481 61.7
Haze_02836 Corylus avellana HOM05D006400 ORTHO05D008039 4.4e-57 226.5 481 59.3
Aqoxy3G01604 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 7.5e-57 225.7 487 65.5
Thecc.03G246700 Theobroma cacao HOM05D006400 ORTHO05D008039 9.8e-57 225.3 476 67.6
TAR628G0558 Trochodendron aralioides HOM05D006400 ORTHO05D008039 9.8e-57 225.3 480 60.0
QL09p046276 Quercus lobata HOM05D006400 ORTHO05D008039 4.1e-55 219.9 470 61.5
Prupe.4G276000 Prunus persica HOM05D006400 ORTHO05D008039 7.0e-55 219.2 476 54.8
Lj3C13G5 Lonicera japonica HOM05D006400 ORTHO05D008039 9.2e-55 218.8 450 56.7
Lsat_1_v5_gn_4_109281 Lactuca sativa HOM05D006400 ORTHO05D008039 2.3e-53 214.2 376 80.9
Gorai.003G033700 Gossypium raimondii HOM05D006400 ORTHO05D008039 1.2e-51 208.4 477 61.0
Gohir.D03G032200 Gossypium hirsutum HOM05D006400 ORTHO05D008039 3.6e-51 206.8 477 60.6
Gorai.007G029300 Gossypium raimondii HOM05D006400 ORTHO05D008039 6.2e-51 206.1 446 62.1
Gohir.A02G148300 Gossypium hirsutum HOM05D006400 ORTHO05D008039 5.2e-50 203.0 477 52.4
Gohir.D11G026800 Gossypium hirsutum HOM05D006400 ORTHO05D008039 2.0e-49 201.1 472 59.5
RcHm_v2.0_Chr7g0204361 Rosa chinensis HOM05D006400 ORTHO05D008039 2.0e-49 201.1 472 50.0
Ciclev10019985m.g Citrus clementina HOM05D006400 ORTHO05D008039 2.2e-48 197.6 470 61.3
CANSAT25G0610 Cannabis sativa HOM05D006400 ORTHO05D008039 7.1e-47 192.6 465 62.6
TWI15G0916 Tripterygium wilfordii HOM05D006400 ORTHO05D008039 7.1e-47 192.6 479 58.5
EL10Ac5g12550 Beta vulgaris HOM05D006400 ORTHO05D008039 9.2e-47 192.2 458 57.2
FAN18G2780 Fragaria x ananassa HOM05D006400 ORTHO05D008039 1.2e-46 191.8 472 60.6
MD06G1055200 Malus domestica HOM05D006400 ORTHO05D008039 1.2e-46 191.8 478 56.9
Potri.001G154901 Populus trichocarpa HOM05D006400 ORTHO05D008039 1.2e-46 191.8 478 57.5
CiPaw.16G085600 Carya illinoinensis HOM05D006400 ORTHO05D008039 2.1e-46 191.0 477 65.6
Oeu052953.1 Olea europaea HOM05D006400 ORTHO05D008039 2.1e-46 191.0 476 54.4
MD04G1061400 Malus domestica HOM05D006400 ORTHO05D008039 7.8e-46 189.1 478 59.2
Sabra01G0124300 Salix brachista HOM05D006400 ORTHO05D008039 1.0e-45 188.7 478 55.4
Sabra01G0124400 Salix brachista HOM05D006400 ORTHO05D008039 1.0e-45 188.7 478 55.4
Sabra01G0124500 Salix brachista HOM05D006400 ORTHO05D008039 1.0e-45 188.7 478 55.4
Hma1.2p1_1196F.1_g266060 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 1.3e-45 188.3 454 68.7
Eucgr.E00397 Eucalyptus grandis HOM05D006400 ORTHO05D008039 2.3e-45 187.6 475 61.7
FvH4_5g19630 Fragaria vesca HOM05D006400 ORTHO05D008039 3.0e-45 187.2 472 61.7
THA.LOC104810088 Tarenaya hassleriana HOM05D006400 ORTHO05D008039 6.6e-45 186.0 475 45.5
PGR042G3373 Punica granatum HOM05D006400 ORTHO05D008039 8.6e-45 185.7 466 54.5
ClCG06G010030 Citrullus lanatus HOM05D006400 ORTHO05D008039 2.5e-44 184.1 469 59.3
Hund12818 Selenicereus undatus HOM05D006400 ORTHO05D008039 2.5e-44 184.1 477 63.9
CARHR174040 Cardamine hirsuta HOM05D006400 ORTHO05D008039 4.3e-44 183.3 482 41.3
Atru.chr9.1257 Acer truncatum HOM05D006400 ORTHO05D008039 1.6e-43 181.4 446 59.9
BolC7t43646H Brassica oleracea HOM05D006400 ORTHO05D008039 2.8e-43 180.6 456 41.9
CsaV3_2G011310 Cucumis sativus L. HOM05D006400 ORTHO05D008039 1.1e-42 178.7 470 56.2
FAN08G3355 Fragaria x ananassa HOM05D006400 ORTHO05D008039 1.4e-42 178.3 472 57.6
SHI09587 Sapria himalayana HOM05D006400 ORTHO05D008039 2.3e-42 177.6 454 45.4
BraA06t27383Z Brassica rapa HOM05D006400 ORTHO05D008039 3.1e-42 177.2 483 40.2
C07p31010 Brassica napus HOM05D006400 ORTHO05D008039 4.0e-42 176.8 456 41.7
CAN.G1312.18 Capsicum annuum HOM05D006400 ORTHO05D008039 5.2e-42 176.4 438 46.8
TPR.G5570 Trifolium pratense HOM05D006400 ORTHO05D008039 5.2e-42 176.4 445 66.1
Lalb_Chr09g0323451 Lupinus albus HOM05D006400 ORTHO05D008039 6.8e-42 176.0 444 54.1
Actinidia14396 Actinidia chinensis HOM05D006400 ORTHO05D008039 1.2e-41 175.3 172 51.2
AL8G10680 Arabidopsis lyrata HOM05D006400 ORTHO05D008039 2.6e-41 174.1 475 40.8
A06p45130 Brassica napus HOM05D006400 ORTHO05D008039 3.4e-41 173.7 480 40.2
Sp2g12080 Schrenkiella parvula HOM05D006400 ORTHO05D008039 5.8e-41 172.9 476 41.8
DCAR_009350 Daucus carota HOM05D006400 ORTHO05D008039 7.6e-41 172.6 397 56.4
VMungo1127G0679 Vigna mungo HOM05D006400 ORTHO05D008039 9.9e-41 172.2 446 48.4
Ca_22891_v3 Cicer arietinum L. HOM05D006400 ORTHO05D008039 1.3e-40 171.8 450 55.8
Thhalv10000870m.g Eutrema salsugineum HOM05D006400 ORTHO05D008039 1.3e-40 171.8 482 39.4
Sed0010566 Sechium edule HOM05D006400 ORTHO05D008039 4.9e-40 169.9 449 58.1
PGR042G3592 Punica granatum HOM05D006400 ORTHO05D008039 1.9e-39 167.9 450 60.4
Carub.0008s0042 Capsella rubella HOM05D006400 ORTHO05D008039 3.2e-39 167.2 477 39.4
MSTRG.24505 Avicennia marina HOM05D006400 ORTHO05D008039 9.2e-39 165.6 458 49.6
Ah.01g005640 Amaranthus hybridus HOM05D006400 ORTHO05D008039 4.6e-38 163.3 435 54.5
Medtr4g021220 Medicago truncatula HOM05D006400 ORTHO05D008039 6.0e-38 162.9 437 60.2
Nitab4.5_0002601g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 6.0e-38 162.9 473 47.1
Cc08_g12000 Coffea canephora HOM05D006400 ORTHO05D008039 1.3e-37 161.8 470 57.4
Nitab4.5_0007283g0050 Nicotiana tabacum HOM05D006400 ORTHO05D008039 1.3e-37 161.8 439 59.5
AT5G47360 Arabidopsis thaliana HOM05D006400 ORTHO05D008039 1.7e-37 161.4 474 43.2
Rhsim13G0212900 Rhododendron simsii HOM05D006400 ORTHO05D008039 1.1e-36 158.7 427 67.9
Phvul.011G001300 Phaseolus vulgaris HOM05D006400 ORTHO05D008039 1.9e-36 157.9 445 45.4
Migut.N02973 Erythranthe guttata HOM05D006400 ORTHO05D008039 7.3e-36 156.0 482 44.0
BcaC06g31395 Brassica carinata HOM05D006400 ORTHO05D008039 1.2e-35 155.2 478 42.7
Glyma.15G265000 Glycine max HOM05D006400 ORTHO05D008039 1.2e-35 155.2 466 45.7
Solyc08g078280.1 Solanum lycopersicum HOM05D006400 ORTHO05D008039 1.2e-35 155.2 452 49.3
MBI10_g34776_MAGBIO Magnolia biondii HOM05D000931 ORTHO05D001924 1.6e-35 154.8 484 61.6
Nn4g24039 Nelumbo nucifera HOM05D006400 ORTHO05D008039 1.6e-35 154.8 179 45.3
QL01p026672 Quercus lobata HOM05D006400 ORTHO05D008039 1.6e-35 154.8 141 54.6
Glyma.08G238900 Glycine max HOM05D006400 ORTHO05D008039 6.2e-35 152.9 457 45.3
arahy.Tifrunner.gnm1.ann1.S7MQ4D Arachis hypogaea HOM05D006400 ORTHO05D008039 8.1e-35 152.5 444 49.5
Peaxi162Scf00017g03140 Petunia axillaris HOM05D006400 ORTHO05D008039 1.4e-34 151.8 432 57.2
MELO3C008512.2 Cucumis melo HOM05D006400 ORTHO05D008039 1.8e-34 151.4 453 54.3
Lj3g0022967 Lotus japonicus HOM05D006400 ORTHO05D008039 1.8e-34 151.4 450 53.1
BcaC06g34259 Brassica carinata HOM05D006400 ORTHO05D008039 1.2e-33 148.7 150 49.3
PGSC0003DMG400039297 Solanum tuberosum HOM05D006400 ORTHO05D008039 3.4e-33 147.1 452 48.7
SGA_v2.0_scaffold54G19637 Striga asiatica HOM05D006400 ORTHO05D008039 5.8e-33 146.4 457 42.0
Aa31csc39G30 Aethionema arabicum HOM05D006400 ORTHO05D008039 2.2e-32 144.4 475 41.5
Nitab4.5_0010304g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 3.8e-32 143.7 461 57.0
Hma1.2p1_1196F.1_g266040 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 1.4e-31 141.7 349 71.1
Cpa.g.sc89.62 Carica papaya HOM05D006400 ORTHO05D008039 3.2e-31 140.6 395 58.5
Manes.02G042000 Manihot esculenta HOM05D006400 ORTHO05D008039 5.4e-31 139.8 372 68.3
Manes.14G149022 Manihot esculenta HOM05D006400 ORTHO05D008039 9.3e-31 139.0 391 32.5
COL.COLO4_37104 Corchorus olitorius HOM05D006400 ORTHO05D008039 3.0e-29 134.0 378 68.8
Sopen08g026780 Solanum pennellii HOM05D006400 ORTHO05D008039 3.0e-29 134.0 430 54.0
SalBow1G4333 Salvia bowleyana HOM05D006400 ORTHO05D008039 1.1e-28 132.1 147 38.8
Peaxi162Scf00346g00056 Petunia axillaris HOM05D006400 ORTHO05D008039 1.6e-27 128.3 449 53.5
ATR0697G201 Amborella trichopoda HOM05D006400 ORTHO05D008039 8.1e-27 125.9 145 42.8
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.1e-26 125.6 351 69.8
Duzib068G0402 Durio zibethinus HOM05D006400 ORTHO05D008039 4.9e-24 116.7 340 72.9
DCAR_028626 Daucus carota HOM05D006400 ORTHO05D008039 1.4e-23 115.2 357 67.8
ECA236G1262 Erigeron canadensis HOM05D006400 ORTHO05D008039 3.2e-23 114.0 87 69.0
SEGI_21761 Sequoiadendron giganteum HOM05D006400 ORTHO05D008039 3.0e-21 107.5 148 33.1
TPR.G39692 Trifolium pratense HOM05D006400 ORTHO05D008039 3.0e-21 107.5 117 44.4
Gohir.A11G027600 Gossypium hirsutum HOM05D006400 ORTHO05D008039 6.6e-21 106.3 102 50.0
Lsat_1_v5_gn_4_109201 Lactuca sativa HOM05D006400 ORTHO05D008039 1.5e-20 105.1 75 70.7
Gohir.D02G148280 Gossypium hirsutum HOM05D006400 ORTHO05D008039 2.4e-18 97.8 92 47.8
Sc01g0008230 Simmondsia chinensis HOM05D006400 ORTHO05D008039 2.0e-17 94.7 105 44.8
Gorai.005G166300 Gossypium raimondii HOM05D006400 ORTHO05D008039 2.6e-17 94.4 92 46.7
FAN13G1818 Fragaria x ananassa HOM05D006400 ORTHO05D008039 3.4e-17 94.0 104 44.2
Gohir.A03G125450 Gossypium hirsutum HOM05D006400 ORTHO05D008039 8.4e-16 89.4 92 46.7
AUR62018329 Chenopodium quinoa HOM05D006400 ORTHO05D008039 2.4e-15 87.8 105 43.8
BcaC06g31398 Brassica carinata HOM05D006400 ORTHO05D008039 3.2e-15 87.4 105 39.0
AUR62035870 Chenopodium quinoa HOM05D006400 ORTHO05D008039 2.7e-14 84.3 107 43.0
VMungo0251G3116 Vigna mungo HOM05D006400 ORTHO05D008039 2.3e-13 81.3 101 45.5
AUR62035872 Chenopodium quinoa HOM05D000268 ORTHO05D008039 1.6e-11 75.1 98 42.9
Aqoxy6G02102 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 1.1e-10 72.4 99 38.4
Psat7g239440 Pisum sativum HOM05D006400 ORTHO05D008039 1.1e-10 72.4 73 52.1
Peaxi162Scf00242g00094 Petunia axillaris HOM05D006400 ORTHO05D008039 1.2e-09 68.9 77 46.8
PSO541G3795 Papaver somniferum HOM05D006400 ORTHO05D008039 4.5e-09 67.0 106 34.0
PSO675G7384 Papaver somniferum HOM05D006400 ORTHO05D008039 1.7e-08 65.1 102 37.3
Cpa.g.sc222.25 Carica papaya HOM05D006596 ORTHO05D008497 6.5e-08 63.2 132 26.5
FAN14G5569 Fragaria x ananassa HOM05D006596 ORTHO05D008497 8.4e-08 62.8 127 26.8
PSO832G4086 Papaver somniferum HOM05D005770 ORTHO05D006702 1.9e-07 61.6 128 29.7
FAN02G0500 Fragaria x ananassa HOM05D006596 ORTHO05D008497 2.5e-07 61.2 127 26.8
MBI18_g10377_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 2.5e-07 61.2 127 29.1
QL07p026858 Quercus lobata HOM05D006596 ORTHO05D008497 2.5e-07 61.2 132 26.5
PSO210G6232 Papaver somniferum HOM05D005770 ORTHO05D006702 3.2e-07 60.8 128 29.7
Migut.O00313 Erythranthe guttata HOM05D006596 ORTHO05D008497 4.2e-07 60.5 132 26.5
Eucgr.F03831 Eucalyptus grandis HOM05D000424 ORTHO05D000355 4.2e-07 60.5 127 26.8
SEGI_12141 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 4.2e-07 60.5 129 27.9
FvH4_6g20810 Fragaria vesca HOM05D006596 ORTHO05D008497 5.5e-07 60.1 127 26.8
Aqoxy2G04148 Aquilegia oxysepala HOM05D005770 ORTHO05D006702 7.1e-07 59.7 166 26.5
GSVIVG01028975001 Vitis vinifera HOM05D005770 ORTHO05D006702 7.1e-07 59.7 128 25.8
RcHm_v2.0_Chr3g0476881 Rosa chinensis HOM05D006596 ORTHO05D008497 9.3e-07 59.3 132 27.3
CDE10G0902 Ceratophyllum demersum HOM05D000424 ORTHO05D000355 1.2e-06 58.9 127 23.6
Manes.12G118100 Manihot esculenta HOM05D000424 ORTHO05D000355 1.2e-06 58.9 129 27.1
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 1.6e-06 58.5 59 52.5
Oeu056257.1 Olea europaea HOM05D005770 ORTHO05D006702 2.1e-06 58.2 133 24.8
CDE05G0339 Ceratophyllum demersum HOM05D006400 ORTHO05D008039 3.5e-06 57.4 37 62.2
Gohir.A12G257700 Gossypium hirsutum HOM05D005770 ORTHO05D006702 3.5e-06 57.4 128 26.6
SHI09190 Sapria himalayana HOM05D000424 ORTHO05D000355 4.6e-06 57.0 127 25.2
TWI36G0926 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 4.6e-06 57.0 111 27.0
A06p16380 Brassica napus HOM05D000424 ORTHO05D000355 6.0e-06 56.6 131 26.0
Migut.F00337 Erythranthe guttata HOM05D005770 ORTHO05D006702 6.0e-06 56.6 128 25.0
Gohir.D12G259000 Gossypium hirsutum HOM05D005770 ORTHO05D006702 6.0e-06 56.6 128 26.6
Gorai.008G277400 Gossypium raimondii HOM05D005770 ORTHO05D006702 6.0e-06 56.6 128 26.6
CDE02G0404 Ceratophyllum demersum HOM05D005770 ORTHO05D006702 7.9e-06 56.2 140 26.4
Oeu063088.1 Olea europaea HOM05D006596 ORTHO05D008497 7.9e-06 56.2 126 25.4
TAR381G0265 Trochodendron aralioides HOM05D000424 ORTHO05D000355 7.9e-06 56.2 129 26.4


User provided reference genes

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