Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 0.0e+00 1292.3 664 100.0
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 5.3e-279 964.1 654 77.1
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 6.8e-274 947.2 656 75.3
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 2.2e-264 915.6 671 70.3
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 4.0e-258 894.8 672 68.5
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 3.7e-256 888.3 646 70.6
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 7.0e-255 884.0 671 68.0
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 1.6e-251 872.8 648 69.9
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 1.6e-251 872.8 671 67.5
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 2.0e-249 865.9 672 65.8
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 5.8e-249 864.4 672 66.1
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 1.9e-247 859.4 674 65.7
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 1.9e-247 859.4 670 67.3
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 5.4e-247 857.8 644 68.5
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 7.1e-247 857.4 671 65.7
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 1.2e-246 856.7 671 65.6
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 4.6e-246 854.7 647 67.1
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 7.8e-246 854.0 648 67.7
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 8.6e-245 850.5 671 65.7
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 2.5e-244 849.0 675 65.3
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 4.3e-244 848.2 671 66.3
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 5.6e-244 847.8 669 66.2
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 7.3e-244 847.4 665 65.0
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 9.5e-244 847.0 668 65.1
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 8.1e-243 844.0 672 65.2
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 1.1e-242 843.6 671 66.0
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 8.9e-242 840.5 671 63.8
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 1.5e-241 839.7 655 64.6
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 9.9e-241 837.0 661 64.0
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 9.9e-241 837.0 695 63.3
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 2.9e-240 835.5 672 63.7
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 4.9e-240 834.7 653 66.0
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 4.9e-240 834.7 665 65.0
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 1.9e-239 832.8 655 64.1
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 9.2e-239 830.5 669 64.1
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 2.1e-238 829.3 669 64.4
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 7.8e-238 827.4 654 63.5
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 1.3e-237 826.6 676 63.5
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 3.0e-237 825.5 660 63.3
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 3.0e-237 825.5 666 65.6
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 3.9e-237 825.1 693 62.5
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 2.5e-236 822.4 671 63.6
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 5.6e-236 821.2 665 65.6
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 7.3e-236 820.8 670 62.5
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 9.6e-236 820.5 673 64.0
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 1.6e-235 819.7 675 63.9
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 3.6e-235 818.5 674 62.5
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 1.1e-234 817.0 645 64.0
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 1.4e-234 816.6 671 62.4
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 1.2e-233 813.5 740 59.1
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 2.0e-233 812.8 693 62.3
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 5.4e-231 804.7 668 62.9
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 1.2e-230 803.5 667 62.8
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 1.6e-230 803.1 668 62.0
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 4.6e-230 801.6 658 61.7
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 6.0e-230 801.2 668 61.1
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 1.3e-229 800.0 680 60.7
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 8.7e-229 797.3 669 60.1
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 1.5e-228 796.6 669 60.2
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 4.3e-228 795.0 677 60.3
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 7.3e-228 794.3 666 61.7
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 1.6e-227 793.1 637 65.0
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 1.6e-227 793.1 732 58.5
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 2.8e-227 792.3 688 61.5
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 3.1e-226 788.9 666 61.4
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 5.3e-226 788.1 659 60.4
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 6.9e-226 787.7 658 61.1
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 7.6e-225 784.3 667 60.6
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 5.4e-223 778.1 636 61.0
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 1.6e-222 776.5 709 57.1
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 2.7e-222 775.8 698 57.6
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 4.6e-222 775.0 659 61.9
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 5.6e-220 768.1 668 59.7
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 4.0e-218 761.9 667 59.1
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 3.4e-217 758.8 581 67.1
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 3.8e-216 755.4 728 55.1
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 4.9e-216 755.0 670 61.0
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 1.9e-215 753.1 575 66.3
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.4e-215 752.7 670 60.1
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 1.5e-212 743.4 640 61.2
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 1.2e-209 733.8 558 66.1
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 4.5e-209 731.9 674 56.5
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.0e-208 730.7 629 61.4
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.2e-208 729.6 580 64.3
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 1.1e-207 727.2 671 57.4
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 3.5e-206 722.2 696 55.7
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 5.1e-205 718.4 670 56.6
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 7.4e-204 714.5 705 57.0
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 9.6e-204 714.1 672 56.0
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 3.1e-202 709.1 582 62.4
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 1.6e-195 686.8 696 54.6
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 1.6e-195 686.8 665 55.6
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 6.3e-195 684.9 669 56.8
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 1.4e-189 667.2 516 67.2
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 9.4e-183 644.4 671 53.9
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 2.0e-180 636.7 666 53.0
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 9.4e-175 617.8 627 53.6
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 9.1e-170 601.3 497 61.8
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.2e-168 596.7 596 55.4
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 1.9e-159 567.0 650 47.8
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 4.4e-156 555.8 667 45.4
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 1.3e-136 491.1 353 70.5
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 1.1e-133 481.5 711 43.2
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 1.1e-119 434.9 584 45.7
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 2.7e-105 387.1 310 64.8
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 2.9e-83 313.9 307 54.7
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 4.2e-82 310.1 368 50.3
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 5.7e-79 299.7 644 33.2
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 2.1e-73 281.2 356 46.9
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.8e-69 268.1 242 59.5
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 7.9e-65 252.7 346 45.1
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 8.5e-51 206.1 355 36.3
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 8.8e-48 196.1 180 54.4
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 2.2e-38 164.9 622 28.1
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 4.5e-36 157.1 322 34.2
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 1.7e-30 138.7 109 63.3
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 2.7e-28 131.3 180 46.1
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 1.8e-24 118.6 98 60.2
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 6.4e-22 110.2 110 54.5
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 2.0e-20 105.1 108 51.9
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 9.9e-15 86.3 98 45.9
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.4e-13 81.6 67 58.2
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 4.1e-13 80.9 80 48.8
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 2.1e-12 78.6 58 65.5
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 2.1e-12 78.6 58 65.5
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 2.7e-12 78.2 42 78.6
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 6.0e-12 77.0 42 78.6
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 8.6e-11 73.2 42 78.6
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 1.5e-10 72.4 53 66.0
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 3.3e-10 71.2 42 73.8
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 4.3e-10 70.9 42 73.8
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 8.1e-09 66.6 42 71.4
QL02p059474 Quercus lobata HOM05D002544 ORTHO05D007856 1.8e-08 65.5 34 82.4
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 1.2e-07 62.8 74 47.3


User provided reference genes

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