Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0532771 Helianthus annuus HOM05D004232 ORTHO05D004909 2.4e-39 164.9 73 100.0
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 2.0e-17 92.0 41 100.0
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 2.1e-11 72.0 41 73.2
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 1.4e-10 69.3 45 68.9
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 1.4e-10 69.3 45 68.9
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 1.8e-10 68.9 41 68.3
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 2.3e-10 68.6 52 65.4
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 4.0e-10 67.8 41 68.3
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 4.0e-10 67.8 41 68.3
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 4.0e-10 67.8 41 68.3
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 5.2e-10 67.4 41 63.4
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 6.8e-10 67.0 41 65.9
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 6.8e-10 67.0 45 62.2
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 6.8e-10 67.0 41 65.9
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 8.9e-10 66.6 41 65.9
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 8.9e-10 66.6 41 68.3
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 2.0e-09 65.5 41 68.3
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 2.6e-09 65.1 45 62.2
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.6e-09 65.1 41 65.9
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.6e-09 65.1 41 65.9
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 2.6e-09 65.1 41 65.9
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 3.4e-09 64.7 45 60.0
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 3.4e-09 64.7 45 64.4
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 4.4e-09 64.3 64 46.9
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 4.4e-09 64.3 41 68.3
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 4.4e-09 64.3 41 68.3
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 4.4e-09 64.3 41 61.0
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 5.8e-09 63.9 41 63.4
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 5.8e-09 63.9 41 65.9
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 5.8e-09 63.9 41 58.5
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 5.8e-09 63.9 41 63.4
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 5.8e-09 63.9 45 64.4
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 5.8e-09 63.9 41 65.9
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 5.8e-09 63.9 41 65.9
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 7.5e-09 63.5 45 60.0
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 7.5e-09 63.5 40 60.0
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 9.8e-09 63.2 41 65.9
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 9.8e-09 63.2 41 65.9
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 9.8e-09 63.2 41 61.0
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 1.7e-08 62.4 41 61.0
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 1.7e-08 62.4 41 65.9
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 1.7e-08 62.4 41 65.9
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.7e-08 62.4 45 55.6
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.7e-08 62.4 45 60.0
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.7e-08 62.4 41 65.9
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 2.2e-08 62.0 41 61.0
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 2.2e-08 62.0 41 61.0
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 2.2e-08 62.0 41 63.4
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 2.9e-08 61.6 41 65.9
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 2.9e-08 61.6 41 61.0
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 2.9e-08 61.6 42 54.8
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 2.9e-08 61.6 41 61.0
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 3.7e-08 61.2 41 61.0
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 3.7e-08 61.2 41 65.9
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 3.7e-08 61.2 43 62.8
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 3.7e-08 61.2 48 60.4
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 3.7e-08 61.2 41 61.0
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 3.7e-08 61.2 41 63.4
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 3.7e-08 61.2 41 63.4
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 3.7e-08 61.2 41 63.4
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 4.9e-08 60.8 41 63.4
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 6.4e-08 60.5 42 64.3
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 6.4e-08 60.5 46 65.2
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 6.4e-08 60.5 42 69.0
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 1.1e-07 59.7 41 58.5
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 1.1e-07 59.7 41 61.0
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 1.1e-07 59.7 41 61.0
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 1.1e-07 59.7 41 56.1
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.1e-07 59.7 41 61.0
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 1.1e-07 59.7 42 64.3
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 1.1e-07 59.7 43 53.5
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 1.1e-07 59.7 41 61.0
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 1.4e-07 59.3 41 58.5
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 1.4e-07 59.3 41 58.5
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 1.9e-07 58.9 41 56.1
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 2.4e-07 58.5 45 55.6
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 2.4e-07 58.5 45 57.8
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 3.2e-07 58.2 41 51.2
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 5.4e-07 57.4 45 57.8
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 5.4e-07 57.4 50 54.0
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 5.4e-07 57.4 41 58.5
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 5.4e-07 57.4 41 56.1
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 5.4e-07 57.4 41 56.1
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 5.4e-07 57.4 45 51.1
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 5.4e-07 57.4 41 56.1
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 1.2e-06 56.2 41 56.1
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 1.2e-06 56.2 41 56.1
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 1.6e-06 55.8 41 61.0
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 1.6e-06 55.8 41 53.7
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.6e-06 55.8 41 53.7
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 1.6e-06 55.8 41 56.1
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 1.6e-06 55.8 41 56.1
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 1.6e-06 55.8 41 61.0
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 2.0e-06 55.5 41 56.1
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 2.7e-06 55.1 41 56.1
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 2.7e-06 55.1 41 53.7
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.7e-06 55.1 39 56.4
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 3.5e-06 54.7 41 53.7
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 3.5e-06 54.7 41 53.7
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 3.5e-06 54.7 40 60.0
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 6.0e-06 53.9 41 51.2
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 6.0e-06 53.9 45 48.9
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 6.0e-06 53.9 39 53.8
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 6.0e-06 53.9 39 56.4
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 7.8e-06 53.5 41 58.5
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 7.8e-06 53.5 41 53.7
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 7.8e-06 53.5 41 56.1


User provided reference genes

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