Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 4.1e-267 924.5 585 100.0
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 2.8e-231 805.4 589 92.7
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 2.2e-175 619.8 593 72.2
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 2.2e-143 513.5 497 75.7
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 3.9e-140 502.7 590 67.8
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 6.5e-103 379.0 453 68.0
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 9.4e-102 375.2 477 65.2
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 1.6e-101 374.4 566 58.1
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 3.9e-100 369.8 609 55.3
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 1.3e-98 364.8 606 55.3
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 1.3e-98 364.8 606 55.3
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 1.8e-97 360.9 490 64.3
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 3.1e-97 360.1 617 53.2
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 5.9e-96 355.9 611 53.0
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 7.7e-96 355.5 589 55.5
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 2.1e-93 347.4 596 54.4
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 2.1e-93 347.4 618 51.6
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 2.7e-93 347.1 618 51.3
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 3.9e-92 343.2 490 59.4
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 3.9e-92 343.2 625 51.8
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 1.5e-91 341.3 603 55.4
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.5e-91 341.3 544 57.9
AUR62025405 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.2e-90 337.4 543 57.5
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 6.3e-90 335.9 506 58.5
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 1.8e-89 334.3 568 54.9
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 1.8e-89 334.3 600 53.3
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 1.8e-89 334.3 611 50.7
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 4.1e-89 333.2 620 52.4
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 9.1e-89 332.0 453 63.1
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 2.0e-88 330.9 573 52.9
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 4.5e-88 329.7 464 59.3
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 1.3e-87 328.2 465 56.8
Oeu040399.1 Olea europaea HOM05D004670 ORTHO05D008020 1.3e-87 328.2 570 55.3
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 1.3e-87 328.2 498 54.0
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 2.9e-87 327.0 611 51.7
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 1.6e-85 321.2 624 50.3
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 2.1e-85 320.9 599 53.8
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 2.3e-84 317.4 601 52.9
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 1.5e-83 314.7 601 52.4
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 3.3e-83 313.5 586 53.4
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 3.3e-83 313.5 465 54.8
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 7.4e-83 312.4 594 53.0
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 7.4e-83 312.4 373 50.1
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 4.8e-82 309.7 595 50.3
ATR0743G160 Amborella trichopoda HOM05D004670 ORTHO05D008020 4.8e-82 309.7 483 59.0
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 6.3e-82 309.3 469 60.6
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 8.2e-82 308.9 583 52.1
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 1.1e-81 308.5 593 52.8
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 1.1e-81 308.5 585 54.2
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 1.1e-81 308.5 300 54.3
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 1.4e-81 308.1 467 60.0
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 1.8e-81 307.8 600 51.7
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 1.8e-81 307.8 590 51.2
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 4.1e-81 306.6 600 51.5
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 7.0e-81 305.8 610 51.3
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 9.1e-81 305.4 464 58.4
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 1.2e-80 305.1 559 53.3
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 1.6e-80 304.7 561 51.9
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 2.2e-79 300.8 464 58.0
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 2.2e-79 300.8 594 51.7
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 2.9e-79 300.4 616 43.7
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 5.0e-79 299.7 460 62.0
PGR119G2020 Punica granatum HOM05D004670 ORTHO05D008020 1.9e-78 297.7 470 59.6
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 5.2e-76 289.7 602 36.0
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 6.8e-76 289.3 608 48.5
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 2.0e-75 287.7 578 50.9
SalBow7G3652 Salvia bowleyana HOM05D004670 ORTHO05D008020 2.0e-75 287.7 432 39.4
SalBow7G4343 Salvia bowleyana HOM05D004670 ORTHO05D008020 7.5e-75 285.8 432 39.4
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 4.8e-74 283.1 597 50.9
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 4.1e-73 280.0 598 46.0
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 9.1e-73 278.9 380 46.1
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 1.1e-70 271.9 553 50.5
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 1.5e-70 271.6 561 51.2
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 9.4e-70 268.9 434 41.0
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 1.2e-69 268.5 549 50.5
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 1.2e-69 268.5 600 48.2
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 3.6e-69 266.9 597 48.2
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 1.4e-68 265.0 495 46.5
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 1.4e-68 265.0 582 50.5
Thhalv10020352m.g Eutrema salsugineum HOM05D004670 ORTHO05D008020 2.2e-66 257.7 574 47.4
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 2.2e-66 257.7 454 54.8
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 2.4e-65 254.2 465 55.7
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 5.4e-65 253.1 598 48.5
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 1.0e-63 248.8 583 49.2
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 2.9e-63 247.3 596 46.5
BolC1t05888H Brassica oleracea HOM05D004670 ORTHO05D008020 3.4e-59 233.8 582 46.6
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 1.1e-57 228.8 465 33.5
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 4.5e-56 223.4 609 45.8
BNapus_Darmor_BZH_scaffold_99p00180 Brassica napus HOM05D004670 ORTHO05D008020 7.8e-56 222.6 579 46.8
AT3G02650 Arabidopsis thaliana HOM05D004670 ORTHO05D008020 2.3e-55 221.1 594 46.8
BraSC246t45824Z Brassica rapa HOM05D004670 ORTHO05D008020 2.5e-54 217.6 581 45.8
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 3.3e-54 217.2 545 48.8
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 4.3e-54 216.9 599 45.9
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 5.2e-52 209.9 587 46.7
CARHR076670 Cardamine hirsuta HOM05D004670 ORTHO05D008020 5.2e-52 209.9 541 47.5
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 1.5e-51 208.4 587 46.5
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 1.5e-51 208.4 517 48.7
AUR62000265 Chenopodium quinoa HOM05D004670 ORTHO05D008020 4.4e-51 206.8 526 32.9
Sp3g01690 Schrenkiella parvula HOM05D004670 ORTHO05D008020 4.4e-51 206.8 608 44.1
C03p40240 Brassica napus HOM05D004670 ORTHO05D008020 1.3e-50 205.3 407 36.1
Carub.0003s0177 Capsella rubella HOM05D004670 ORTHO05D008020 1.7e-50 204.9 608 44.4
BNapus_Darmor_BZH_scaffold_122p00150 Brassica napus HOM05D004670 ORTHO05D008020 2.9e-50 204.1 422 33.9
BcaB04g19393 Brassica carinata HOM05D004670 ORTHO05D008020 3.7e-50 203.8 597 45.2
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 4.9e-50 203.4 576 46.0
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 4.9e-50 203.4 576 46.0
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 1.9e-49 201.4 166 57.2
Zm00001eb144640 Zea mays HOM05D004670 ORTHO05D008020 1.1e-46 192.2 578 45.3
PGR119G2157 Punica granatum HOM05D004670 ORTHO05D008020 6.2e-45 186.4 429 31.5
CSS0025547 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 3.1e-36 157.5 276 38.0
Thecc.09G224400 Theobroma cacao HOM05D004670 ORTHO05D008020 8.9e-36 156.0 456 42.5
SEGI_06910 Sequoiadendron giganteum HOM05D004670 ORTHO05D008020 1.6e-32 145.2 544 40.4
AUR62008837 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.1e-28 132.5 353 30.9
Medtr8g105355 Medicago truncatula HOM05D004670 ORTHO05D014137 2.0e-27 128.3 276 32.6
Medtr8g105450 Medicago truncatula HOM05D004670 ORTHO05D014137 2.0e-27 128.3 276 32.6
AUR62006613 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.6e-27 127.9 349 31.2
TPR.G17089 Trifolium pratense HOM05D004670 ORTHO05D014137 2.6e-27 127.9 283 32.5
Medtr5g092030 Medicago truncatula HOM05D004670 ORTHO05D014137 1.7e-26 125.2 275 32.7
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 5.1e-23 113.6 218 34.4
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 1.3e-21 109.0 269 31.2
Medtr5g088900 Medicago truncatula HOM05D004670 ORTHO05D014137 1.5e-19 102.1 266 30.5
AUR62044649 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.6e-16 92.0 63 68.3
VMungo1080G1842 Vigna mungo HOM05D004670 ORTHO05D014137 6.0e-16 90.1 71 63.4
Medtr1g102600 Medicago truncatula HOM05D004670 ORTHO05D266903 5.6e-14 83.6 134 35.8
Os01g0897500 Oryza sativa ssp. japonica HOM05D004670 ORTHO05D008020 1.4e-12 79.0 68 63.2
VMungo1215G2433 Vigna mungo HOM05D004670 ORTHO05D014137 5.8e-11 73.6 70 58.6
TPR.G10813 Trifolium pratense HOM05D004670 ORTHO05D008020 8.4e-10 69.7 78 43.6
Ca_09603_v3 Cicer arietinum L. HOM05D004670 ORTHO05D014137 9.3e-09 66.2 149 34.9
PSO017G1759 Papaver somniferum HOM05D007661 ORTHO05D009671 3.5e-08 64.3 165 27.3
PSO063G2745 Papaver somniferum HOM05D007661 ORTHO05D009671 3.5e-08 64.3 168 27.4
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 7.9e-08 63.2 174 28.7
TAR362G0078 Trochodendron aralioides HOM05D007661 ORTHO05D009671 7.9e-08 63.2 180 25.6
Medtr5g095780 Medicago truncatula HOM05D004670 ORTHO05D008020 1.0e-07 62.8 68 44.1
Cpa.g.c31883 Carica papaya HOM05D004670 ORTHO05D022223 1.8e-07 62.0 139 30.2
TPR.G5188 Trifolium pratense HOM05D004670 ORTHO05D008020 1.8e-07 62.0 212 25.5
Atru.BG.229.p Acer truncatum HOM05D006218 ORTHO05D007338 2.3e-07 61.6 243 25.5
Oeu039630.1 Olea europaea HOM05D004670 ORTHO05D025854 5.1e-07 60.5 55 61.8
AUR62023108 Chenopodium quinoa HOM05D004783 ORTHO05D005581 1.1e-06 59.3 229 23.1
Cpa.g.sc209.39 Carica papaya HOM05D004670 ORTHO05D022223 1.9e-06 58.5 93 37.6
Nn1g08093 Nelumbo nucifera HOM05D007661 ORTHO05D009671 1.9e-06 58.5 165 25.5
TWI75G1155 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 2.5e-06 58.2 234 23.9
Glyma.02G192800 Glycine max HOM05D006596 ORTHO05D008497 3.3e-06 57.8 241 22.4
Thhalv10012543m.g Eutrema salsugineum HOM05D006596 ORTHO05D008497 4.3e-06 57.4 268 20.9
TWI79G0945 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 4.3e-06 57.4 238 23.1
Aqoxy4G00696 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 7.4e-06 56.6 276 23.2
Sp6g25930 Schrenkiella parvula HOM05D007661 ORTHO05D009671 9.6e-06 56.2 166 25.9


User provided reference genes

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