Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 8.6e-51 203.4 103 100.0
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 1.1e-24 116.7 59 96.6
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 1.2e-23 113.2 59 93.2
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 2.6e-23 112.1 59 91.5
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 5.8e-23 110.9 59 91.5
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 7.6e-23 110.5 71 77.5
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 4.9e-22 107.8 59 86.4
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 4.9e-22 107.8 63 79.4
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 8.4e-22 107.1 59 84.7
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 1.1e-21 106.7 59 84.7
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 1.1e-21 106.7 59 84.7
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 1.1e-21 106.7 59 84.7
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 1.4e-21 106.3 63 79.4
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 1.9e-21 105.9 67 74.6
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 1.9e-21 105.9 67 74.6
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 1.9e-21 105.9 67 74.6
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 1.9e-21 105.9 63 81.0
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 2.4e-21 105.5 59 83.1
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 3.2e-21 105.1 63 81.0
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 5.4e-21 104.4 59 81.4
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 9.2e-21 103.6 57 84.2
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 9.2e-21 103.6 59 79.7
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 9.2e-21 103.6 59 81.4
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 9.2e-21 103.6 59 81.4
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 1.2e-20 103.2 59 81.4
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 1.6e-20 102.8 59 81.4
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 1.6e-20 102.8 63 76.2
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 2.1e-20 102.4 59 83.1
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 2.1e-20 102.4 59 83.1
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 2.1e-20 102.4 59 83.1
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 2.7e-20 102.1 63 77.8
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 2.7e-20 102.1 59 81.4
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 2.7e-20 102.1 59 79.7
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 2.7e-20 102.1 67 71.6
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 2.7e-20 102.1 63 76.2
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 3.5e-20 101.7 59 81.4
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 4.6e-20 101.3 63 76.2
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 6.0e-20 100.9 63 74.6
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 7.8e-20 100.5 63 76.2
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 7.8e-20 100.5 63 76.2
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 7.8e-20 100.5 59 79.7
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 1.3e-19 99.8 59 78.0
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 1.3e-19 99.8 59 78.0
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 1.3e-19 99.8 63 76.2
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 1.7e-19 99.4 67 68.7
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 2.3e-19 99.0 59 78.0
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 3.0e-19 98.6 59 76.3
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 3.9e-19 98.2 63 73.0
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 3.9e-19 98.2 69 68.1
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 5.1e-19 97.8 63 73.0
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 5.1e-19 97.8 67 68.7
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 5.1e-19 97.8 59 76.3
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 5.1e-19 97.8 59 79.7
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 5.1e-19 97.8 59 74.6
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 5.1e-19 97.8 59 74.6
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 6.6e-19 97.4 63 71.4
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 8.7e-19 97.1 59 74.6
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 8.7e-19 97.1 59 74.6
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 8.7e-19 97.1 59 78.0
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 8.7e-19 97.1 63 71.4
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 8.7e-19 97.1 63 73.0
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 1.5e-18 96.3 59 76.3
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 1.5e-18 96.3 63 71.4
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 1.5e-18 96.3 59 74.6
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 1.5e-18 96.3 63 74.6
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 1.9e-18 95.9 63 69.8
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.9e-18 95.9 63 69.8
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.9e-18 95.9 63 69.8
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.9e-18 95.9 63 69.8
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 1.9e-18 95.9 59 71.2
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 2.5e-18 95.5 63 73.0
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 2.5e-18 95.5 63 69.8
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 2.5e-18 95.5 59 72.9
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 4.3e-18 94.7 63 71.4
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 5.6e-18 94.4 63 69.8
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 7.3e-18 94.0 59 72.9
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 9.6e-18 93.6 63 68.3
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 9.6e-18 93.6 63 68.3
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 1.3e-17 93.2 59 71.2
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 1.6e-17 92.8 59 71.2
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 1.6e-17 92.8 71 60.6
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 2.1e-17 92.4 59 71.2
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 2.1e-17 92.4 59 71.2
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 2.1e-17 92.4 59 67.8
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 3.6e-17 91.7 63 66.7
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 3.6e-17 91.7 63 66.7
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 8.1e-17 90.5 59 67.8
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 8.1e-17 90.5 67 61.2
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 1.8e-16 89.4 80 60.0
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 3.1e-16 88.6 59 69.5
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 3.8e-14 81.6 59 67.8
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 4.9e-14 81.3 119 42.9
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 5.4e-13 77.8 59 62.7
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 9.3e-13 77.0 42 88.1
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.6e-12 76.3 67 55.2
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.6e-12 76.3 67 55.2
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 7.3e-10 67.4 53 56.6
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 7.3e-10 67.4 42 76.2
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 2.8e-09 65.5 42 73.8
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 1.5e-07 59.7 63 44.4


User provided reference genes

Program Settings