Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 5.0e-155 551.2 308 100.0
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 4.4e-151 538.1 308 98.1
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 5.3e-88 328.6 327 66.7
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 5.9e-55 218.8 368 50.5
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 7.7e-55 218.4 346 46.2
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 3.2e-53 213.0 373 44.0
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 3.2e-53 213.0 373 44.0
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 3.6e-52 209.5 370 44.6
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 3.6e-52 209.5 343 47.8
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 6.1e-52 208.8 357 46.5
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.0e-51 208.0 382 44.5
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 5.2e-51 205.7 390 45.4
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.7e-49 200.7 341 47.5
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 8.3e-49 198.4 383 42.8
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.4e-48 196.8 374 39.8
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 2.4e-48 196.8 374 44.1
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 4.1e-48 196.1 352 43.2
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 5.3e-48 195.7 348 44.3
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 2.7e-47 193.4 370 46.8
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 5.9e-47 192.2 373 43.4
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 7.7e-47 191.8 395 41.5
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 2.2e-46 190.3 379 43.0
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 2.9e-46 189.9 388 42.8
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 8.5e-46 188.3 378 43.9
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 8.5e-46 188.3 381 43.8
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.5e-45 186.8 372 44.9
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 2.5e-45 186.8 298 46.3
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 3.2e-45 186.4 381 37.5
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 5.5e-45 185.7 373 44.8
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 5.5e-45 185.7 373 41.6
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 5.5e-45 185.7 379 43.0
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 9.4e-45 184.9 378 43.7
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.2e-44 184.5 373 38.1
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 4.7e-44 182.6 392 42.9
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 6.1e-44 182.2 379 41.2
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 6.1e-44 182.2 379 41.2
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 6.1e-44 182.2 384 44.3
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 2.3e-43 180.3 373 38.6
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 4.0e-43 179.5 388 41.0
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 8.8e-43 178.3 374 43.3
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 8.8e-43 178.3 332 45.2
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 1.2e-42 177.9 375 41.9
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 1.5e-42 177.6 377 39.3
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 4.4e-42 176.0 359 42.3
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 4.4e-42 176.0 373 40.5
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 5.7e-42 175.6 375 40.3
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 5.7e-42 175.6 391 40.9
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 7.5e-42 175.3 382 42.9
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 7.5e-42 175.3 382 42.9
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 9.8e-42 174.9 382 42.9
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 1.3e-41 174.5 395 41.5
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 2.8e-41 173.3 380 43.9
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 6.3e-41 172.2 382 39.3
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 1.4e-40 171.0 382 39.3
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 4.1e-40 169.5 383 38.1
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 5.4e-40 169.1 381 40.2
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 7.0e-40 168.7 359 41.2
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 9.1e-40 168.3 382 42.9
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 1.6e-39 167.5 380 39.5
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.7e-39 166.8 393 37.9
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 3.5e-39 166.4 369 41.5
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 3.5e-39 166.4 369 41.5
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 4.5e-39 166.0 370 37.3
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 4.5e-39 166.0 370 37.3
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 4.5e-39 166.0 373 39.1
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 5.9e-39 165.6 382 38.2
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 5.9e-39 165.6 396 40.7
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 7.7e-39 165.2 394 41.4
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 7.7e-39 165.2 378 40.2
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 7.7e-39 165.2 380 37.9
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 1.7e-38 164.1 390 37.4
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 2.3e-38 163.7 386 43.0
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 5.0e-38 162.5 380 39.5
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 8.6e-38 161.8 381 40.2
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 2.5e-37 160.2 330 43.9
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 3.3e-37 159.8 372 40.1
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 3.3e-37 159.8 397 40.1
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 3.3e-37 159.8 384 40.4
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 4.2e-37 159.5 403 34.2
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 4.2e-37 159.5 368 42.1
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 9.5e-37 158.3 390 35.9
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 2.8e-36 156.8 323 44.0
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 8.0e-36 155.2 373 36.7
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.0e-35 154.8 391 36.1
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 5.2e-35 152.5 324 42.9
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 2.0e-34 150.6 376 38.8
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 2.6e-34 150.2 336 34.8
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 2.6e-34 150.2 323 42.1
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 3.4e-34 149.8 380 35.3
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 4.4e-34 149.4 355 36.6
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 5.7e-34 149.1 377 34.2
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 7.5e-34 148.7 329 39.8
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 7.5e-34 148.7 402 37.6
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 2.2e-33 147.1 390 36.7
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 4.9e-33 146.0 344 36.6
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 6.3e-33 145.6 367 34.1
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 1.4e-32 144.4 321 41.1
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 2.7e-31 140.2 366 33.9
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 7.8e-31 138.7 359 37.3
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 5.0e-30 136.0 357 31.7
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 6.6e-30 135.6 330 40.6
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 8.6e-30 135.2 343 34.4
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.1e-29 134.8 327 40.7
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.5e-29 133.7 361 33.8
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 4.3e-29 132.9 327 40.4
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 7.3e-29 132.1 286 37.1
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 9.5e-29 131.7 345 35.1
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 2.8e-28 130.2 313 38.0
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 4.7e-28 129.4 340 33.5
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 4.7e-28 129.4 344 36.6
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 1.0e-27 128.3 300 42.0
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.4e-27 127.9 343 33.2
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 1.8e-27 127.5 313 37.4
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 3.1e-27 126.7 344 37.2
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 4.0e-27 126.3 378 32.0
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 8.9e-27 125.2 387 32.0
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 2.6e-26 123.6 316 41.8
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 1.7e-25 120.9 376 35.1
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.4e-24 117.9 368 36.1
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.2e-24 116.7 327 39.1
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 2.0e-23 114.0 343 31.2
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 3.5e-23 113.2 263 33.1
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 3.5e-23 113.2 200 50.5
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 4.6e-23 112.8 343 32.1
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.3e-22 111.3 311 34.1
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.3e-22 111.3 376 37.8
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 9.5e-21 105.1 288 34.7
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 1.2e-20 104.8 230 46.5
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 8.0e-20 102.1 314 39.8
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 3.1e-19 100.1 301 37.5
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 3.1e-19 100.1 181 44.8
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 1.2e-18 98.2 294 34.4
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 7.5e-18 95.5 293 34.8
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 1.7e-17 94.4 278 32.4
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 3.7e-17 93.2 155 50.3
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 1.1e-16 91.7 294 35.0
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 4.1e-16 89.7 262 34.4
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 5.4e-16 89.4 262 34.0
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 1.6e-15 87.8 263 33.1
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 1.6e-15 87.8 263 33.1
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 6.0e-15 85.9 274 32.5
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.3e-14 84.7 328 30.8
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 5.1e-14 82.8 200 44.5
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 1.1e-13 81.6 346 28.3
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 2.5e-13 80.5 314 29.6
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 4.3e-13 79.7 155 48.4
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 1.6e-12 77.8 256 30.1
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 1.5e-10 71.2 281 31.0
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 2.0e-10 70.9 256 30.1
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 8.3e-09 65.5 257 30.0
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 3.2e-08 63.5 282 30.5
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 4.6e-07 59.7 312 30.1
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.3e-06 58.2 307 28.7
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 1.3e-06 58.2 299 25.8
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.3e-06 58.2 158 31.6
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 2.3e-06 57.4 287 29.6
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 3.0e-06 57.0 258 29.5
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 3.9e-06 56.6 287 28.9
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 8.6e-06 55.5 312 30.1


User provided reference genes

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