Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 1.9e-37 158.7 82 100.0
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 1.3e-33 146.0 81 91.4
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 1.9e-29 132.1 81 81.5
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 1.1e-27 126.3 81 76.5
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 7.6e-26 120.2 81 72.8
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 1.3e-25 119.4 81 70.4
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 1.7e-25 119.0 81 72.8
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.7e-25 119.0 81 72.8
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 1.7e-25 119.0 81 71.6
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 2.2e-25 118.6 81 74.1
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 2.9e-25 118.2 81 71.6
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 4.9e-25 117.5 81 69.1
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 4.9e-25 117.5 81 71.6
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 6.4e-25 117.1 81 70.4
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 8.4e-25 116.7 81 67.9
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 8.4e-25 116.7 79 69.6
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 8.4e-25 116.7 81 70.4
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 1.1e-24 116.3 81 67.9
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.1e-24 116.3 79 70.9
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.1e-24 116.3 79 70.9
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 1.1e-24 116.3 79 70.9
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 1.4e-24 115.9 81 67.9
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 1.9e-24 115.5 81 67.9
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 1.9e-24 115.5 81 67.9
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 3.2e-24 114.8 81 69.1
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 4.2e-24 114.4 81 69.1
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 5.4e-24 114.0 81 71.6
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 5.4e-24 114.0 81 69.1
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 7.1e-24 113.6 81 69.1
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 9.3e-24 113.2 81 69.1
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 9.3e-24 113.2 81 66.7
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 9.3e-24 113.2 81 69.1
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 1.2e-23 112.8 81 67.9
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 1.2e-23 112.8 81 71.6
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 1.6e-23 112.5 81 66.7
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 1.6e-23 112.5 81 70.4
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 1.6e-23 112.5 81 67.9
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.6e-23 112.5 81 67.9
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.6e-23 112.5 80 73.8
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 1.6e-23 112.5 80 73.8
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 1.6e-23 112.5 78 70.5
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 2.1e-23 112.1 81 69.1
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 2.1e-23 112.1 79 73.4
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 2.1e-23 112.1 81 69.1
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 2.1e-23 112.1 81 70.4
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.7e-23 111.7 81 67.9
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 2.7e-23 111.7 81 70.4
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 3.5e-23 111.3 81 66.7
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 3.5e-23 111.3 81 65.4
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 3.5e-23 111.3 81 67.9
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 4.6e-23 110.9 81 65.4
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 4.6e-23 110.9 81 65.4
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 4.6e-23 110.9 81 67.9
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 4.6e-23 110.9 81 66.7
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 6.0e-23 110.5 81 66.7
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 7.9e-23 110.2 81 64.2
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 7.9e-23 110.2 81 66.7
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 7.9e-23 110.2 81 66.7
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 1.3e-22 109.4 81 67.9
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 1.8e-22 109.0 81 67.9
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 1.8e-22 109.0 81 65.4
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 2.3e-22 108.6 81 65.4
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 2.3e-22 108.6 79 69.6
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 2.3e-22 108.6 81 65.4
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 5.1e-22 107.5 81 65.4
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 5.1e-22 107.5 81 66.7
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 6.7e-22 107.1 81 65.4
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 1.1e-21 106.3 81 65.4
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 1.1e-21 106.3 81 65.4
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 1.1e-21 106.3 81 66.7
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 1.5e-21 105.9 81 64.2
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 1.9e-21 105.5 79 67.1
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.9e-21 105.5 67 76.1
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 2.5e-21 105.1 81 64.2
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 4.3e-21 104.4 81 63.0
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 4.3e-21 104.4 81 65.4
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 9.6e-21 103.2 81 61.7
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 2.8e-20 101.7 82 64.6
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 2.8e-20 101.7 81 59.3
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 1.8e-19 99.0 86 60.5
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 9.0e-19 96.7 81 56.8
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 1.5e-18 95.9 81 60.5
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 7.6e-18 93.6 100 50.0
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 1.0e-17 93.2 81 55.6
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 8.4e-17 90.1 51 88.2
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 1.2e-15 86.3 49 87.8
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 1.2e-15 86.3 66 59.1
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 2.7e-15 85.1 67 59.7
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 7.9e-15 83.6 52 73.1
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 8.7e-14 80.1 59 66.1
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 1.1e-13 79.7 61 63.9
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 4.3e-13 77.8 53 64.2
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 5.7e-13 77.4 81 45.7
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 9.6e-13 76.6 53 67.9
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 2.1e-12 75.5 53 64.2
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 3.7e-12 74.7 81 51.9
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 6.2e-12 73.9 50 76.0
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.8e-11 72.4 48 77.1
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 1.8e-11 72.4 82 52.4
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 2.4e-11 72.0 49 73.5
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 2.4e-11 72.0 49 73.5
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 5.3e-11 70.9 49 75.5
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 6.9e-11 70.5 49 73.5
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 2.0e-10 68.9 71 50.7
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 2.6e-10 68.6 49 69.4
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 3.4e-10 68.2 52 55.8
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 3.8e-09 64.7 49 65.3
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 6.5e-09 63.9 49 67.3
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 8.4e-09 63.5 49 63.3
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.2e-08 61.6 67 52.2
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.2e-08 61.6 67 52.2
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 9.3e-08 60.1 67 50.7
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 2.7e-07 58.5 80 41.2
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.0e-06 56.6 60 45.0
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 5.1e-06 54.3 84 39.3


User provided reference genes

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