Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0530831 Helianthus annuus HOM05D003685 ORTHO05D003168 9.6e-29 129.8 82 100.0
HanXRQChr14g0440341 Helianthus annuus HOM05D003685 ORTHO05D003168 2.5e-21 105.1 76 90.8
HanXRQChr07g0193541 Helianthus annuus HOM05D003685 ORTHO05D003168 1.0e-17 93.2 75 82.7
Lsat_1_v5_gn_2_79940 Lactuca sativa HOM05D003685 ORTHO05D003168 2.9e-17 91.7 75 60.0
ECA238G1186 Erigeron canadensis HOM05D003685 ORTHO05D003168 2.5e-16 88.6 75 76.0
Cpa.g.sc116.33 Carica papaya HOM05D003685 ORTHO05D003168 4.6e-15 84.3 75 54.7
Nn3g18248 Nelumbo nucifera HOM05D003685 ORTHO05D003168 3.0e-14 81.6 75 54.7
Gohir.A11G160900 Gossypium hirsutum HOM05D003685 ORTHO05D003168 1.9e-13 79.0 75 53.3
Gohir.D11G167200 Gossypium hirsutum HOM05D003685 ORTHO05D003168 1.9e-13 79.0 75 53.3
Gorai.007G178300 Gossypium raimondii HOM05D003685 ORTHO05D003168 1.9e-13 79.0 75 53.3
Zm00001eb039230 Zea mays HOM05D003685 ORTHO05D003168 7.4e-13 77.0 71 74.6
ClCG03G008650 Citrullus lanatus HOM05D003685 ORTHO05D003168 9.6e-13 76.6 77 53.2
MD09G1262700 Malus domestica HOM05D003685 ORTHO05D003168 9.6e-13 76.6 78 52.6
Oeu000910.1 Olea europaea HOM05D003685 ORTHO05D003168 9.6e-13 76.6 77 54.5
MELO3C022853.2 Cucumis melo HOM05D003685 ORTHO05D003168 1.3e-12 76.3 77 53.2
Duzib133G0562 Durio zibethinus HOM05D003685 ORTHO05D003168 1.6e-12 75.9 75 73.3
Duzib211G0337 Durio zibethinus HOM05D003685 ORTHO05D003168 1.6e-12 75.9 75 50.7
Lsat_1_v5_gn_3_81860 Lactuca sativa HOM05D003685 ORTHO05D003168 1.6e-12 75.9 75 53.3
MD17G1257600 Malus domestica HOM05D003685 ORTHO05D003168 1.6e-12 75.9 78 52.6
Sed0024816 Sechium edule HOM05D003685 ORTHO05D003168 3.7e-12 74.7 73 52.1
CsaV3_5G024070 Cucumis sativus L. HOM05D000964 ORTHO05D003168 4.8e-12 74.3 71 53.5
Manes.01G116500 Manihot esculenta HOM05D003685 ORTHO05D003168 4.8e-12 74.3 77 49.4
Nitab4.5_0003855g0030 Nicotiana tabacum HOM05D003685 ORTHO05D003168 4.8e-12 74.3 72 51.4
Sed0020121 Sechium edule HOM05D003685 ORTHO05D003168 4.8e-12 74.3 77 51.9
ECA246G1160 Erigeron canadensis HOM05D003685 ORTHO05D003168 6.2e-12 73.9 75 49.3
Manes.17G064700 Manihot esculenta HOM05D003685 ORTHO05D003168 6.2e-12 73.9 77 50.6
TWI53G1623 Tripterygium wilfordii HOM05D003685 ORTHO05D003168 8.2e-12 73.6 76 51.3
Carub.0006s1571 Capsella rubella HOM05D003685 ORTHO05D003168 1.1e-11 73.2 76 51.3
COL.COLO4_15735 Corchorus olitorius HOM05D003685 ORTHO05D003168 1.1e-11 73.2 73 50.7
HanXRQChr12g0375651 Helianthus annuus HOM05D003685 ORTHO05D003168 1.1e-11 73.2 75 49.3
Sc10g0000750 Simmondsia chinensis HOM05D003685 ORTHO05D003168 1.1e-11 73.2 80 50.0
Nitab4.5_0000036g0480 Nicotiana tabacum HOM05D003685 ORTHO05D003168 1.4e-11 72.8 72 51.4
PGR042G0188 Punica granatum HOM05D003685 ORTHO05D003168 1.4e-11 72.8 77 67.5
Lj6g0007365 Lotus japonicus HOM05D003685 ORTHO05D003168 1.8e-11 72.4 77 64.9
Zm00001eb175870 Zea mays HOM05D003685 ORTHO05D003168 1.8e-11 72.4 69 75.4
AL6G28560 Arabidopsis lyrata HOM05D003685 ORTHO05D003168 2.4e-11 72.0 76 50.0
Gohir.A07G077100 Gossypium hirsutum HOM05D003685 ORTHO05D003168 2.4e-11 72.0 75 50.7
Gohir.D07G081800 Gossypium hirsutum HOM05D003685 ORTHO05D003168 2.4e-11 72.0 75 50.7
Gorai.001G086900 Gossypium raimondii HOM05D003685 ORTHO05D003168 2.4e-11 72.0 75 50.7
LjContig00141g0023457 Lotus japonicus HOM05D003685 ORTHO05D003168 2.4e-11 72.0 77 51.9
Thecc.04G119100 Theobroma cacao HOM05D003685 ORTHO05D003168 2.4e-11 72.0 73 49.3
DCAR_025870 Daucus carota HOM05D003685 ORTHO05D003168 3.1e-11 71.6 75 60.0
Hma1.2p1_0832F.1_g225520 Hydrangea macrophylla HOM05D003685 ORTHO05D003168 3.1e-11 71.6 78 48.7
MBI04_g34112_MAGBIO Magnolia biondii HOM05D003685 ORTHO05D003168 3.1e-11 71.6 70 48.6
Actinidia22789 Actinidia chinensis HOM05D000008 ORTHO05D000005 4.0e-11 71.2 78 50.0
Actinidia36369 Actinidia chinensis HOM05D003685 ORTHO05D003168 4.0e-11 71.2 78 50.0
HanXRQChr15g0475431 Helianthus annuus HOM05D003685 ORTHO05D003168 4.0e-11 71.2 73 49.3
RcHm_v2.0_Chr3g0493401 Rosa chinensis HOM05D003685 ORTHO05D003168 4.0e-11 71.2 78 50.0
Solyc02g063340.1 Solanum lycopersicum HOM05D003685 ORTHO05D003168 4.0e-11 71.2 72 50.0
Sopen02g014410 Solanum pennellii HOM05D003685 ORTHO05D003168 4.0e-11 71.2 72 50.0
PGSC0003DMG400010392 Solanum tuberosum HOM05D003685 ORTHO05D003168 4.0e-11 71.2 72 50.0
TWI74G1588 Tripterygium wilfordii HOM05D003685 ORTHO05D003168 4.0e-11 71.2 76 50.0
THA.LOC104820836 Tarenaya hassleriana HOM05D003685 ORTHO05D003168 5.3e-11 70.9 76 50.0
AT3G03430 Arabidopsis thaliana HOM05D003685 ORTHO05D003168 6.9e-11 70.5 76 47.4
CARHR195720 Cardamine hirsuta HOM05D003685 ORTHO05D003168 6.9e-11 70.5 76 48.7
Os08g0560700 Oryza sativa ssp. japonica HOM05D003685 ORTHO05D003168 6.9e-11 70.5 75 69.3
CAN.G1067.5 Capsicum annuum HOM05D003685 ORTHO05D003168 9.0e-11 70.1 66 51.5
Sc11g0008680 Simmondsia chinensis HOM05D003685 ORTHO05D003168 9.0e-11 70.1 78 50.0
AL3G13100 Arabidopsis lyrata HOM05D003685 ORTHO05D003168 1.2e-10 69.7 76 51.3
arahy.Tifrunner.gnm1.ann1.20BG1F Arachis hypogaea HOM05D003685 ORTHO05D003168 1.2e-10 69.7 72 50.0
arahy.Tifrunner.gnm1.ann1.TR7VBX Arachis hypogaea HOM05D003685 ORTHO05D003168 1.2e-10 69.7 72 50.0
Prupe.3G160400 Prunus persica HOM05D003685 ORTHO05D003168 1.2e-10 69.7 72 50.0
Thhalv10015161m.g Eutrema salsugineum HOM05D003685 ORTHO05D003168 1.5e-10 69.3 76 50.0
FvH4_1g28900 Fragaria vesca HOM05D003685 ORTHO05D003168 1.5e-10 69.3 78 50.0
FAN19G1718 Fragaria x ananassa HOM05D003685 ORTHO05D003168 1.5e-10 69.3 78 50.0
FAN23G1531 Fragaria x ananassa HOM05D003685 ORTHO05D003168 1.5e-10 69.3 78 50.0
Lalb_Chr20g0117001 Lupinus albus HOM05D003685 ORTHO05D003168 1.5e-10 69.3 77 50.6
AT5G17480 Arabidopsis thaliana HOM05D003685 ORTHO05D003168 2.0e-10 68.9 76 48.7
A03p33270 Brassica napus HOM05D003685 ORTHO05D003168 2.0e-10 68.9 76 57.9
CSS0016349 Camellia sinensis var. sinensis HOM05D003685 ORTHO05D003168 2.0e-10 68.9 78 64.1
Sabra17G0106100 Salix brachista HOM05D003685 ORTHO05D003168 2.0e-10 68.9 75 69.3
BcaC05g30536 Brassica carinata HOM05D003685 ORTHO05D003168 2.6e-10 68.6 76 44.7
A05p43820 Brassica napus HOM05D003685 ORTHO05D003168 2.6e-10 68.6 76 44.7
C05p63400 Brassica napus HOM05D003685 ORTHO05D003168 2.6e-10 68.6 76 44.7
BolC5t35004H Brassica oleracea HOM05D003685 ORTHO05D003168 2.6e-10 68.6 76 44.7
BraA05t23119Z Brassica rapa HOM05D003685 ORTHO05D003168 2.6e-10 68.6 76 44.7
CAN.G1061.44 Capsicum annuum HOM05D003685 ORTHO05D003168 2.6e-10 68.6 72 48.6
Ca_05785_v3 Cicer arietinum L. HOM05D003685 ORTHO05D003168 2.6e-10 68.6 72 61.1
Ca_30988_v3 Cicer arietinum L. HOM05D003685 ORTHO05D003168 2.6e-10 68.6 72 61.1
Sp3g02430 Schrenkiella parvula HOM05D003685 ORTHO05D003168 2.6e-10 68.6 76 50.0
BcaB04g19369 Brassica carinata HOM05D003685 ORTHO05D003168 3.4e-10 68.2 76 52.6
CSS0039227 Camellia sinensis var. sinensis HOM05D003685 ORTHO05D003168 3.4e-10 68.2 78 47.4
Sp6g26740 Schrenkiella parvula HOM05D003685 ORTHO05D003168 3.4e-10 68.2 76 48.7
TWI77G0488 Tripterygium wilfordii HOM05D003685 ORTHO05D003168 3.4e-10 68.2 76 67.1
Manes.13G093900 Manihot esculenta HOM05D003685 ORTHO05D003168 4.5e-10 67.8 77 45.5
AUR62023181 Chenopodium quinoa HOM05D003685 ORTHO05D003168 5.8e-10 67.4 66 68.2
Medtr5g079470 Medicago truncatula HOM05D003685 ORTHO05D003168 5.8e-10 67.4 72 48.6
Potri.017G126400 Populus trichocarpa HOM05D003685 ORTHO05D003168 5.8e-10 67.4 75 69.3
QL11p003870 Quercus lobata HOM05D003685 ORTHO05D003168 5.8e-10 67.4 77 50.6
TPR.G3491 Trifolium pratense HOM05D003685 ORTHO05D003168 5.8e-10 67.4 72 61.1
BcaC01g04402 Brassica carinata HOM05D003685 ORTHO05D003168 7.6e-10 67.0 76 57.9
BcaC01g04406 Brassica carinata HOM05D003685 ORTHO05D003168 7.6e-10 67.0 76 57.9
C03p40520 Brassica napus HOM05D003685 ORTHO05D003168 7.6e-10 67.0 76 57.9
BolC3t16317H Brassica oleracea HOM05D003685 ORTHO05D003168 7.6e-10 67.0 76 57.9
BraA03t12499Z Brassica rapa HOM05D003685 ORTHO05D003168 7.6e-10 67.0 76 57.9
Lalb_Chr18g0053371 Lupinus albus HOM05D003685 ORTHO05D003168 7.6e-10 67.0 77 48.1
SalBow3G2120 Salvia bowleyana HOM05D003685 ORTHO05D003168 7.6e-10 67.0 77 45.5
Phvul.001G231100 Phaseolus vulgaris HOM05D003685 ORTHO05D003168 1.0e-09 66.6 78 62.8
Aa31LG5G13930 Aethionema arabicum HOM05D003685 ORTHO05D003168 1.3e-09 66.2 74 48.6
AUR62023227 Chenopodium quinoa HOM05D003685 ORTHO05D003168 1.3e-09 66.2 72 62.5
SalBow7G2561 Salvia bowleyana HOM05D003685 ORTHO05D003168 1.3e-09 66.2 78 60.3
CARHR077450 Cardamine hirsuta HOM05D003685 ORTHO05D003168 1.7e-09 65.9 76 43.4
Migut.L00461 Erythranthe guttata HOM05D003685 ORTHO05D003168 1.7e-09 65.9 66 62.1
MD05G1258400 Malus domestica HOM05D003685 ORTHO05D003168 2.2e-09 65.5 73 49.3
Solyc02g091480.1 Solanum lycopersicum HOM05D003685 ORTHO05D003168 2.2e-09 65.5 72 47.2
Nitab4.5_0009638g0020 Nicotiana tabacum HOM05D003685 ORTHO05D003168 2.9e-09 65.1 72 48.6
PGR004G0993 Punica granatum HOM05D003685 ORTHO05D003168 2.9e-09 65.1 74 45.9
Rhsim08G0086900 Rhododendron simsii HOM05D003685 ORTHO05D003168 2.9e-09 65.1 72 45.8
Atru.chr1.1843 Acer truncatum HOM05D003685 ORTHO05D003168 5.0e-09 64.3 77 45.5
PGSC0003DMG400030652 Solanum tuberosum HOM05D003685 ORTHO05D003168 5.0e-09 64.3 72 45.8
vmacro22373 Vaccinium macrocarpon HOM05D014992 ORTHO05D003168 5.0e-09 64.3 78 50.0
vmacro22897 Vaccinium macrocarpon HOM05D003685 ORTHO05D003168 5.0e-09 64.3 78 50.0
Haze_16359 Corylus avellana HOM05D003685 ORTHO05D003168 6.5e-09 63.9 72 43.1
Lsat_1_v5_gn_4_156660 Lactuca sativa HOM05D003685 ORTHO05D003168 6.5e-09 63.9 75 46.7
Lalb_Chr15g0084851 Lupinus albus HOM05D003685 ORTHO05D003168 6.5e-09 63.9 77 45.5
Sopen02g036100 Solanum pennellii HOM05D003685 ORTHO05D003168 6.5e-09 63.9 72 45.8
MBI12_g30397_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D003168 8.4e-09 63.5 69 47.8
Peaxi162Scf00911g00004 Petunia axillaris HOM05D003685 ORTHO05D003168 8.4e-09 63.5 69 46.4
Potri.004G089200 Populus trichocarpa HOM05D003685 ORTHO05D003168 8.4e-09 63.5 75 65.3
Ciclev10013229m.g Citrus clementina HOM05D003685 ORTHO05D003168 1.1e-08 63.2 77 45.5
Cfa002094 Carpinus fangiana HOM05D003685 ORTHO05D003168 1.4e-08 62.8 78 57.7
Lalb_Chr10g0104461 Lupinus albus HOM05D003685 ORTHO05D003168 1.4e-08 62.8 72 45.8
Phvul.008G234700 Phaseolus vulgaris HOM05D003685 ORTHO05D003168 1.4e-08 62.8 77 67.5
Psat2g041920 Pisum sativum HOM05D003685 ORTHO05D003168 1.4e-08 62.8 72 62.5
Nitab4.5_0002664g0060 Nicotiana tabacum HOM05D003685 ORTHO05D003168 1.9e-08 62.4 69 47.8
QL03p039371 Quercus lobata HOM05D003685 ORTHO05D003168 1.9e-08 62.4 77 59.7
BcaC03g13523 Brassica carinata HOM05D003685 ORTHO05D003168 2.5e-08 62.0 70 62.9
A02p04230 Brassica napus HOM05D003685 ORTHO05D003168 2.5e-08 62.0 70 62.9
C02p09110 Brassica napus HOM05D003685 ORTHO05D003168 2.5e-08 62.0 70 62.9
BolC2t06822H Brassica oleracea HOM05D003685 ORTHO05D003168 2.5e-08 62.0 70 62.9
BraA02t05386Z Brassica rapa HOM05D003685 ORTHO05D003168 2.5e-08 62.0 70 62.9
CiPaw.04G046300 Carya illinoinensis HOM05D003685 ORTHO05D003168 2.5e-08 62.0 78 44.9
HPP92_003364 Vanilla planifolia HOM05D003685 ORTHO05D003168 3.2e-08 61.6 66 45.5
BolC1t05831H Brassica oleracea HOM05D003685 ORTHO05D003168 7.1e-08 60.5 76 53.9
Glyma.02G245901 Glycine max HOM05D003685 ORTHO05D003168 7.1e-08 60.5 72 66.7
BcaC09g47746 Brassica carinata HOM05D003685 ORTHO05D003168 9.3e-08 60.1 76 56.6
Cc07_g08080 Coffea canephora HOM05D003685 ORTHO05D003168 9.3e-08 60.1 77 42.9
Glyma.14G216000 Glycine max HOM05D003685 ORTHO05D003168 9.3e-08 60.1 72 63.9
Peaxi162Scf02113g00006 Petunia axillaris HOM05D003685 ORTHO05D003168 9.3e-08 60.1 69 44.9
unitig_37.g12380 Utricularia gibba HOM05D000408 ORTHO05D000655 9.3e-08 60.1 72 43.1
Aqoxy3G00097 Aquilegia oxysepala HOM05D003685 ORTHO05D003168 1.2e-07 59.7 75 64.0
BcaC05g30270 Brassica carinata HOM05D003685 ORTHO05D003168 1.2e-07 59.7 76 43.4
Sabra04G0059800 Salix brachista HOM05D003685 ORTHO05D003168 1.6e-07 59.3 43 69.8
arahy.Tifrunner.gnm1.ann1.3WH4I0 Arachis hypogaea HOM05D000001 ORTHO05D009971 2.1e-07 58.9 74 44.6
arahy.Tifrunner.gnm1.ann1.YU644E Arachis hypogaea HOM05D000001 ORTHO05D009971 2.1e-07 58.9 74 44.6
Glyma.11G217300 Glycine max HOM05D003685 ORTHO05D003168 2.7e-07 58.5 88 50.0
Dinv14887 Davidia involucrata HOM05D000559 ORTHO05D000596 3.5e-07 58.2 57 50.9
CiPaw.03G069700 Carya illinoinensis HOM05D003685 ORTHO05D003168 4.6e-07 57.8 73 42.5
FvH4_3g11850 Fragaria vesca HOM05D003685 ORTHO05D003168 6.1e-07 57.4 77 46.8
Sed0006736 Sechium edule HOM05D003685 ORTHO05D003168 6.1e-07 57.4 73 53.4
MELO3C030156.2 Cucumis melo HOM05D003685 ORTHO05D003168 1.0e-06 56.6 76 46.1
CsaV3_6G003680 Cucumis sativus L. HOM05D003685 ORTHO05D003168 1.0e-06 56.6 74 44.6
Lj4g0014778 Lotus japonicus HOM05D003685 ORTHO05D003168 1.0e-06 56.6 71 42.3
Lalb_Chr12g0209331 Lupinus albus HOM05D003685 ORTHO05D003168 1.0e-06 56.6 75 44.0
Lalb_Chr17g0346151 Lupinus albus HOM05D003685 ORTHO05D003168 1.0e-06 56.6 72 38.9
ClCG08G003720 Citrullus lanatus HOM05D003685 ORTHO05D003168 1.3e-06 56.2 77 45.5
Lalb_Chr07g0187881 Lupinus albus HOM05D003685 ORTHO05D003168 1.8e-06 55.8 71 40.8
RcHm_v2.0_Chr5g0019281 Rosa chinensis HOM05D003685 ORTHO05D003168 1.8e-06 55.8 77 42.9
BraA01t04580Z Brassica rapa HOM05D003685 ORTHO05D003168 3.0e-06 55.1 76 55.3
Lj4g0022454 Lotus japonicus HOM05D003685 ORTHO05D003168 3.0e-06 55.1 71 42.3
PSO017G5026 Papaver somniferum HOM05D003685 ORTHO05D003168 3.0e-06 55.1 71 63.4
PSO478G3570 Papaver somniferum HOM05D003685 ORTHO05D003168 3.0e-06 55.1 71 63.4
HPP92_005033 Vanilla planifolia HOM05D003685 ORTHO05D003168 3.0e-06 55.1 66 65.2
BraA10t44250Z Brassica rapa HOM05D003685 ORTHO05D003168 3.9e-06 54.7 76 42.1


User provided reference genes

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