Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0530351 Helianthus annuus HOM05D006100 ORTHO05D007539 2.3e-61 238.8 127 100.0
HanXRQChr11g0324821 Helianthus annuus HOM05D006100 ORTHO05D007539 3.2e-23 112.1 124 53.2
Lsat_1_v5_gn_4_148381 Lactuca sativa HOM05D006100 ORTHO05D007539 1.3e-21 106.7 123 48.8
Lsat_1_v5_gn_3_76280 Lactuca sativa HOM05D006100 ORTHO05D007539 4.3e-20 101.7 113 55.8
PGR119G0418 Punica granatum HOM05D006100 ORTHO05D007539 3.6e-14 82.0 123 43.9
ECA232G0790 Erigeron canadensis HOM05D006100 ORTHO05D007539 3.0e-13 79.0 134 42.5
TWI09G0021 Tripterygium wilfordii HOM05D006100 ORTHO05D007539 1.1e-12 77.0 84 47.6
MD15G1262800 Malus domestica HOM05D006100 ORTHO05D007539 4.3e-12 75.1 75 53.3
Oeu009416.1 Olea europaea HOM05D006100 ORTHO05D007539 5.7e-12 74.7 125 38.4
Prupe.7G153900 Prunus persica HOM05D006100 ORTHO05D007539 5.7e-12 74.7 88 45.5
Thecc.01G036600 Theobroma cacao HOM05D006100 ORTHO05D007539 7.4e-12 74.3 116 41.4
MD02G1148600 Malus domestica HOM05D006100 ORTHO05D007539 1.3e-11 73.6 87 43.7
Dinv39980 Davidia involucrata HOM05D006100 ORTHO05D007539 2.8e-11 72.4 123 35.8
Actinidia19182 Actinidia chinensis HOM05D006100 ORTHO05D007539 3.7e-11 72.0 99 45.5
FvH4_1g13390 Fragaria vesca HOM05D006100 ORTHO05D007539 6.3e-11 71.2 110 41.8
FAN19G3207 Fragaria x ananassa HOM05D006100 ORTHO05D007539 6.3e-11 71.2 110 41.8
Oeu041448.1 Olea europaea HOM05D006100 ORTHO05D007539 6.3e-11 71.2 125 37.6
Aqoxy6G01099 Aquilegia oxysepala HOM05D006100 ORTHO05D007539 1.1e-10 70.5 126 38.1
Haze_15098 Corylus avellana HOM05D006100 ORTHO05D007539 1.1e-10 70.5 104 41.3
FAN28G1903 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.8e-10 69.7 110 40.9
AT5G66780 Arabidopsis thaliana HOM05D006100 ORTHO05D007539 3.1e-10 68.9 124 38.7
BcaB07g29655 Brassica carinata HOM05D006100 ORTHO05D007539 4.1e-10 68.6 123 36.6
Duzib147G1001 Durio zibethinus HOM05D006100 ORTHO05D007539 5.3e-10 68.2 123 39.0
Phvul.002G029900 Phaseolus vulgaris HOM05D006100 ORTHO05D007539 6.9e-10 67.8 79 48.1
CARHR280920 Cardamine hirsuta HOM05D006100 ORTHO05D007539 1.2e-09 67.0 124 35.5
QL06p045927 Quercus lobata HOM05D006100 ORTHO05D007539 1.2e-09 67.0 110 38.2
Rhsim08G0115500 Rhododendron simsii HOM05D006100 ORTHO05D007539 1.2e-09 67.0 68 54.4
Gohir.A10G094900 Gossypium hirsutum HOM05D006100 ORTHO05D007539 1.5e-09 66.6 75 48.0
Carub.0008s2773 Capsella rubella HOM05D006100 ORTHO05D007539 2.0e-09 66.2 88 42.0
THA.LOC104821276 Tarenaya hassleriana HOM05D006100 ORTHO05D007539 2.0e-09 66.2 130 33.8
COL.COLO4_22086 Corchorus olitorius HOM05D006100 ORTHO05D007539 3.4e-09 65.5 123 38.2
BcaC06g34744 Brassica carinata HOM05D006100 ORTHO05D007539 4.5e-09 65.1 126 38.1
C07p25000 Brassica napus HOM05D006100 ORTHO05D007539 4.5e-09 65.1 126 38.1
RcHm_v2.0_Chr2g0101751 Rosa chinensis HOM05D006100 ORTHO05D007539 4.5e-09 65.1 86 41.9
C02p64790 Brassica napus HOM05D006100 ORTHO05D007539 7.7e-09 64.3 58 55.2
BolC2t12540H Brassica oleracea HOM05D006100 ORTHO05D007539 7.7e-09 64.3 58 55.2
BolC7t43033H Brassica oleracea HOM05D006100 ORTHO05D007539 7.7e-09 64.3 126 38.1
Lalb_Chr09g0322441 Lupinus albus HOM05D006100 ORTHO05D007539 7.7e-09 64.3 84 48.8
Medtr5g020060 Medicago truncatula HOM05D006100 ORTHO05D007539 7.7e-09 64.3 57 57.9
Nitab4.5_0003233g0010 Nicotiana tabacum HOM05D006100 ORTHO05D007539 7.7e-09 64.3 88 40.9
Sp2g29900 Schrenkiella parvula HOM05D006100 ORTHO05D007539 7.7e-09 64.3 123 35.0
CiPaw.02G017200 Carya illinoinensis HOM05D006100 ORTHO05D007539 1.3e-08 63.5 82 46.3
arahy.Tifrunner.gnm1.ann1.L1JEHI Arachis hypogaea HOM05D006100 ORTHO05D007539 2.2e-08 62.8 93 44.1
BcaC03g18400 Brassica carinata HOM05D006100 ORTHO05D007539 2.2e-08 62.8 75 44.0
CiPaw.01G037400 Carya illinoinensis HOM05D006100 ORTHO05D007539 2.2e-08 62.8 104 39.4
RcHm_v2.0_Chr2g0101741 Rosa chinensis HOM05D006100 ORTHO05D007539 2.2e-08 62.8 128 34.4
AL8G44670 Arabidopsis lyrata HOM05D006100 ORTHO05D007539 2.9e-08 62.4 125 34.4
FAN23G0264 Fragaria x ananassa HOM05D006100 ORTHO05D007539 3.8e-08 62.0 82 45.1
A07p17150 Brassica napus HOM05D006100 ORTHO05D007539 6.5e-08 61.2 126 36.5
BraA07t29442Z Brassica rapa HOM05D006100 ORTHO05D007539 6.5e-08 61.2 126 36.5
Duzib264G0645 Durio zibethinus HOM05D006100 ORTHO05D007539 6.5e-08 61.2 63 49.2
Thhalv10005154m.g Eutrema salsugineum HOM05D006100 ORTHO05D007539 6.5e-08 61.2 125 35.2
Nn5g29589 Nelumbo nucifera HOM05D006100 ORTHO05D007539 6.5e-08 61.2 117 36.8
Psat2g159960 Pisum sativum HOM05D006100 ORTHO05D007539 6.5e-08 61.2 118 40.7
Atru.chr3.567 Acer truncatum HOM05D006100 ORTHO05D007539 8.5e-08 60.8 117 36.8
vmacro17841 Vaccinium macrocarpon HOM05D006100 ORTHO05D007539 8.5e-08 60.8 65 49.2
CSS0018588 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 1.4e-07 60.1 93 40.9
Gohir.A11G184500 Gossypium hirsutum HOM05D006100 ORTHO05D007539 1.4e-07 60.1 93 44.1
MD15G1262900 Malus domestica HOM05D006100 ORTHO05D007539 1.4e-07 60.1 75 45.3
VMungo1215G0978 Vigna mungo HOM05D006100 ORTHO05D007539 1.4e-07 60.1 73 47.9
FAN19G2702 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.9e-07 59.7 127 32.3
A02p44400 Brassica napus HOM05D006100 ORTHO05D007539 2.5e-07 59.3 127 36.2
BraA02t09357Z Brassica rapa HOM05D006100 ORTHO05D007539 2.5e-07 59.3 127 36.2
Glyma.16G140500 Glycine max HOM05D006100 ORTHO05D007539 2.5e-07 59.3 91 40.7
FvH4_1g13380 Fragaria vesca HOM05D006100 ORTHO05D007539 3.2e-07 58.9 127 32.3
FAN26G1330 Fragaria x ananassa HOM05D006100 ORTHO05D007539 3.2e-07 58.9 56 51.8
Lj2g0016254 Lotus japonicus HOM05D006100 ORTHO05D007539 3.2e-07 58.9 115 40.9
CSS0029658 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 4.2e-07 58.5 69 40.6
Eucgr.I02450 Eucalyptus grandis HOM05D006100 ORTHO05D007539 4.2e-07 58.5 57 47.4
Sed0016253 Sechium edule HOM05D006100 ORTHO05D007539 4.2e-07 58.5 83 42.2
arahy.Tifrunner.gnm1.ann1.IKK69W Arachis hypogaea HOM05D006100 ORTHO05D007539 5.5e-07 58.2 132 35.6
BcaB02g09991 Brassica carinata HOM05D006100 ORTHO05D007539 5.5e-07 58.2 133 34.6
Cfa004303 Carpinus fangiana HOM05D006100 ORTHO05D007539 7.2e-07 57.8 127 36.2
Oeu033643.1 Olea europaea HOM05D006100 ORTHO05D007539 7.2e-07 57.8 44 61.4
SalBow5G1753 Salvia bowleyana HOM05D006100 ORTHO05D007539 9.4e-07 57.4 82 46.3
Ciclev10026748m.g Citrus clementina HOM05D006100 ORTHO05D007539 1.6e-06 56.6 94 36.2
Lj4g0020328 Lotus japonicus HOM05D006100 ORTHO05D007539 1.6e-06 56.6 88 40.9
PGR102G3048 Punica granatum HOM05D006100 ORTHO05D007539 1.6e-06 56.6 78 43.6
MSTRG.2759 Avicennia marina HOM05D006100 ORTHO05D007539 2.1e-06 56.2 86 39.5
Aa31LG1G15340 Aethionema arabicum HOM05D006100 ORTHO05D007539 2.7e-06 55.8 61 45.9
Nitab4.5_0001385g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 2.7e-06 55.8 72 45.8
FAN23G1739 Fragaria x ananassa HOM05D006100 ORTHO05D007539 6.1e-06 54.7 124 29.0
Nitab4.5_0000434g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 6.1e-06 54.7 72 45.8


User provided reference genes

Program Settings