Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 0.0e+00 1170.2 728 100.0
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 9.7e-165 584.7 648 58.6
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 1.5e-144 517.7 679 55.2
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 2.7e-138 496.9 644 51.9
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 2.5e-136 490.3 649 50.4
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 2.8e-132 476.9 660 49.7
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 1.5e-128 464.5 659 47.8
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 2.5e-128 463.8 654 49.1
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 1.1e-123 448.4 654 46.9
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 1.7e-121 441.0 668 46.0
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 2.3e-121 440.7 656 45.9
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 1.5e-120 438.0 652 51.5
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 1.5e-120 438.0 642 45.8
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 3.0e-118 430.3 662 48.2
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 2.6e-117 427.2 651 51.8
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 7.5e-117 425.6 651 49.8
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 3.7e-116 423.3 652 50.6
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 7.0e-115 419.1 649 47.9
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 1.6e-114 417.9 647 45.1
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 3.5e-114 416.8 657 47.0
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 7.8e-114 415.6 651 51.5
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 2.3e-113 414.1 673 46.7
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 8.6e-113 412.1 654 46.6
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 2.8e-111 407.1 615 48.6
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 2.8e-111 407.1 709 47.4
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 8.0e-111 405.6 695 43.2
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 1.8e-110 404.4 650 51.1
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 5.2e-110 402.9 520 50.0
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 4.4e-109 399.8 675 45.5
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 5.8e-109 399.4 649 45.0
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 3.2e-107 393.7 653 47.0
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 1.2e-106 391.7 657 47.6
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.6e-106 391.3 657 50.5
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 4.6e-106 389.8 672 45.4
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 6.0e-106 389.4 692 45.7
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 6.0e-106 389.4 674 45.7
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.0e-105 388.7 659 49.9
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 5.0e-105 386.3 703 47.4
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 7.3e-104 382.5 644 49.8
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 7.3e-104 382.5 703 43.2
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 9.5e-104 382.1 633 43.0
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 2.8e-103 380.6 663 42.5
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 1.4e-102 378.3 686 42.0
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 1.4e-102 378.3 661 44.2
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 4.0e-102 376.7 594 41.9
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 4.0e-102 376.7 525 53.3
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 8.9e-102 375.6 696 43.8
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 1.3e-100 371.7 653 48.9
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 1.7e-100 371.3 670 44.5
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 2.2e-100 370.9 700 44.9
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 1.1e-99 368.6 696 43.0
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 1.4e-99 368.2 656 41.3
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 1.4e-99 368.2 678 44.1
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 1.4e-99 368.2 700 44.7
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 1.4e-99 368.2 607 41.4
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 5.1e-97 359.8 648 44.9
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 1.5e-96 358.2 690 42.0
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 4.3e-96 356.7 686 39.5
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 1.6e-95 354.8 659 44.5
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 1.8e-94 351.3 601 44.9
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 4.0e-94 350.1 608 40.8
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 5.2e-94 349.7 645 41.1
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 2.0e-93 347.8 711 44.0
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 4.6e-90 336.7 547 48.3
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 2.3e-89 334.3 599 41.4
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 5.1e-89 333.2 631 49.0
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 6.6e-89 332.8 571 45.4
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 1.1e-88 332.0 596 46.1
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 2.5e-88 330.9 696 41.2
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 1.4e-86 325.1 730 44.0
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 1.2e-85 322.0 703 39.0
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 3.4e-85 320.5 656 42.7
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 4.4e-85 320.1 703 37.3
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 1.1e-83 315.5 667 43.8
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 3.2e-83 313.9 650 41.7
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 1.2e-82 312.0 691 42.3
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 2.7e-82 310.8 664 44.0
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 1.7e-81 308.1 595 43.9
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 8.7e-81 305.8 597 43.9
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 8.7e-81 305.8 698 39.7
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 1.8e-78 298.1 463 49.2
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 3.1e-78 297.4 678 43.4
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 3.1e-78 297.4 662 42.7
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 4.0e-78 297.0 562 42.2
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 3.4e-77 293.9 667 42.1
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 4.5e-77 293.5 570 43.3
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 5.8e-77 293.1 587 43.3
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 3.2e-75 287.3 677 43.9
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 1.0e-73 282.3 652 40.6
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 1.0e-73 282.3 472 46.6
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 2.3e-73 281.2 643 37.5
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 3.3e-72 277.3 557 42.4
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 5.6e-72 276.6 544 45.4
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 6.2e-71 273.1 426 48.6
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 5.3e-70 270.0 576 42.7
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 2.2e-68 264.6 312 51.3
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 3.5e-66 257.3 671 37.4
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 1.3e-65 255.4 648 34.6
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 2.3e-65 254.6 568 38.7
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 3.9e-65 253.8 671 38.6
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 4.3e-64 250.4 414 47.6
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 9.6e-64 249.2 564 44.1
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 3.8e-60 237.3 630 41.6
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.1e-59 235.7 449 43.0
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 1.2e-58 232.3 646 37.0
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 1.0e-57 229.2 636 37.6
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 3.9e-57 227.3 637 37.5
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 6.7e-57 226.5 641 37.0
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 2.5e-56 224.6 636 36.3
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 9.7e-56 222.6 635 37.0
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 2.4e-54 218.0 318 51.9
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 2.2e-52 211.5 371 50.7
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.4e-38 165.6 302 40.4
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 1.7e-36 158.7 164 56.7
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 3.2e-35 154.5 662 32.8
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 4.2e-35 154.1 665 32.9
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 1.0e-33 149.4 268 39.9
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 1.2e-29 136.0 608 31.9
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 2.6e-29 134.8 227 52.0
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 2.1e-26 125.2 627 26.0
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 2.7e-26 124.8 595 30.3
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 2.3e-25 121.7 118 55.9
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 2.0e-21 108.6 170 41.2
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 3.8e-20 104.4 286 32.9
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.2e-18 99.4 106 60.4
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.2e-18 99.4 106 60.4
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 1.4e-17 95.9 106 49.1
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.3e-17 95.1 105 59.0
Cfa025790 Carpinus fangiana HOM05D005724 ORTHO05D006636 5.4e-14 84.0 619 27.0
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 5.9e-13 80.5 425 28.0
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 3.8e-12 77.8 126 40.5
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 6.8e-09 67.0 177 42.4


User provided reference genes

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