Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 1.9e-128 462.6 255 100.0
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 9.1e-78 294.3 255 64.7
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 4.9e-39 165.6 255 42.7
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.9e-38 163.7 260 40.0
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 5.4e-38 162.2 260 39.6
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 7.1e-38 161.8 262 45.4
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 3.9e-36 156.0 260 43.8
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 1.4e-33 147.5 260 42.3
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.8e-33 147.1 260 42.3
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 1.1e-30 137.9 253 47.0
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 2.4e-30 136.7 257 37.7
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 5.4e-30 135.6 264 43.9
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 7.1e-30 135.2 269 46.8
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 1.6e-29 134.0 259 39.4
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 6.0e-29 132.1 259 40.5
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 7.9e-29 131.7 266 41.4
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.0e-28 131.3 275 44.7
ECA234G4300 Erigeron canadensis HOM05D004679 ORTHO05D005524 1.3e-28 131.0 147 55.1
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 8.7e-28 128.3 266 40.6
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 2.5e-27 126.7 262 38.5
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 2.8e-26 123.2 270 38.1
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 6.2e-26 122.1 269 41.3
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 2.4e-25 120.2 259 34.0
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 2.4e-25 120.2 275 34.2
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 3.1e-25 119.8 267 31.8
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 4.0e-25 119.4 279 38.4
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 6.9e-25 118.6 141 50.4
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.2e-24 117.9 255 30.6
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.2e-24 117.9 268 42.5
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 4.5e-24 115.9 263 33.1
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 4.5e-24 115.9 275 37.5
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 7.6e-24 115.2 270 37.0
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 2.9e-23 113.2 264 41.3
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 3.8e-23 112.8 272 39.7
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 6.4e-23 112.1 287 38.0
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 8.4e-23 111.7 262 33.2
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.9e-22 110.5 273 34.8
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 1.9e-22 110.5 273 34.8
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 5.4e-22 109.0 260 33.8
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 5.4e-22 109.0 248 35.1
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 7.1e-22 108.6 261 40.6
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 9.3e-22 108.2 248 33.9
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 9.3e-22 108.2 267 34.1
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 1.6e-21 107.5 261 40.6
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 2.1e-21 107.1 280 40.7
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 2.1e-21 107.1 243 35.0
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 2.1e-21 107.1 272 42.3
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 2.1e-21 107.1 268 38.1
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 2.7e-21 106.7 270 40.7
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 6.0e-21 105.5 260 40.4
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 6.0e-21 105.5 261 39.8
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 6.0e-21 105.5 261 40.2
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 1.0e-20 104.8 271 36.9
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 1.3e-20 104.4 264 39.0
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.3e-20 103.6 261 33.7
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 3.0e-20 103.2 272 40.4
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 3.9e-20 102.8 254 39.4
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 6.7e-20 102.1 275 29.5
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 6.7e-20 102.1 254 32.3
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 2.5e-19 100.1 268 38.1
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 2.5e-19 100.1 253 32.4
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 4.3e-19 99.4 264 36.0
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 5.6e-19 99.0 266 38.3
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 1.6e-18 97.4 232 40.1
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 2.1e-18 97.1 262 38.5
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 6.2e-18 95.5 261 35.2
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 1.4e-17 94.4 247 39.3
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 9.0e-17 91.7 264 40.9
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 1.2e-16 91.3 265 39.2
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 1.5e-16 90.9 257 31.9
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.6e-16 90.1 266 31.2
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 7.6e-16 88.6 261 28.4
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 7.6e-16 88.6 258 33.7
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.3e-15 87.8 273 28.2
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 2.9e-15 86.7 272 27.6
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 3.8e-15 86.3 265 35.1
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 3.8e-15 86.3 229 32.3
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 4.9e-15 85.9 256 34.0
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 6.5e-15 85.5 266 39.5
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 1.1e-14 84.7 257 31.1
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 1.1e-14 84.7 264 29.2
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 1.4e-14 84.3 270 38.9
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 3.2e-14 83.2 270 38.1
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 3.2e-14 83.2 265 32.1
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 1.2e-13 81.3 268 38.4
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 1.2e-13 81.3 268 38.4
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 1.2e-13 81.3 277 40.4
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.2e-13 81.3 265 36.2
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.2e-13 81.3 275 27.6
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 1.2e-13 81.3 269 26.0
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.6e-13 80.9 269 26.0
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 2.1e-13 80.5 268 38.4
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 2.1e-13 80.5 268 38.4
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 2.7e-13 80.1 269 38.7
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 2.7e-13 80.1 260 30.0
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 3.5e-13 79.7 268 39.2
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 4.6e-13 79.3 268 42.2
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 6.0e-13 79.0 253 30.8
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 6.0e-13 79.0 259 28.2
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 7.9e-13 78.6 270 37.4
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 7.9e-13 78.6 227 32.2
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.0e-12 78.2 269 34.9
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 1.3e-12 77.8 271 26.6
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 3.0e-12 76.6 271 39.9
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 3.0e-12 76.6 259 33.2
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 6.7e-12 75.5 254 36.6
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 1.1e-11 74.7 269 29.7
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 1.1e-11 74.7 75 49.3
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 2.5e-11 73.6 191 45.5
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 2.5e-11 73.6 247 28.7
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 9.6e-11 71.6 275 29.5
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 9.6e-11 71.6 260 35.0
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 1.3e-10 71.2 269 36.8
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.4e-09 67.8 258 26.7
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 3.1e-09 66.6 257 28.8
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 3.1e-09 66.6 126 31.7
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 3.1e-09 66.6 274 28.5
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 4.1e-09 66.2 259 33.6
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 9.0e-09 65.1 261 28.4
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.2e-08 64.7 261 37.9
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 2.6e-08 63.5 259 26.3
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 2.6e-08 63.5 269 35.3
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 2.6e-08 63.5 247 27.9
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 7.6e-08 62.0 244 31.6
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 7.6e-08 62.0 248 35.1
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.0e-07 61.6 248 25.4
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 1.3e-07 61.2 262 33.6
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.7e-07 60.8 267 28.1
unitig_26.g10255 Utricularia gibba HOM05D004679 ORTHO05D005524 2.9e-07 60.1 203 25.6
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.1e-06 58.2 239 33.9
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.4e-06 57.8 188 31.4
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 2.5e-06 57.0 263 28.9
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 3.2e-06 56.6 260 27.7
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 9.3e-06 55.1 245 34.7


User provided reference genes

Program Settings