Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0529271 Helianthus annuus HOM05D006321 ORTHO05D007929 7.0e-92 340.5 161 100.0
ECA240G2363 Erigeron canadensis HOM05D006321 ORTHO05D007929 4.6e-83 311.2 161 90.1
HanXRQChr03g0068421 Helianthus annuus HOM05D006321 ORTHO05D007929 2.3e-82 308.9 152 94.7
ECA234G0872 Erigeron canadensis HOM05D006321 ORTHO05D007929 1.5e-81 306.2 161 88.8
Lsat_1_v5_gn_7_55681 Lactuca sativa HOM05D006321 ORTHO05D007929 6.2e-80 300.8 160 87.5
Dinv25432 Davidia involucrata HOM05D006321 ORTHO05D007929 4.6e-75 284.6 161 79.5
COL.COLO4_27457 Corchorus olitorius HOM05D006321 ORTHO05D007929 6.6e-74 280.8 161 78.3
Nitab4.5_0002365g0010 Nicotiana tabacum HOM05D006321 ORTHO05D007929 8.6e-74 280.4 157 78.3
CAN.G547.21 Capsicum annuum HOM05D006321 ORTHO05D007929 1.5e-73 279.6 161 77.0
PGSC0003DMG400028738 Solanum tuberosum HOM05D006321 ORTHO05D007929 1.5e-73 279.6 161 76.4
Nitab4.5_0000366g0180 Nicotiana tabacum HOM05D006321 ORTHO05D007929 1.9e-73 279.3 157 79.0
CAN.G279.32 Capsicum annuum HOM05D006321 ORTHO05D007929 4.3e-73 278.1 157 78.3
Solyc07g008910.3 Solanum lycopersicum HOM05D006321 ORTHO05D007929 4.3e-73 278.1 161 77.0
Atru.chr7.791 Acer truncatum HOM05D006321 ORTHO05D007929 7.3e-73 277.3 158 77.2
Sc03g0007150 Simmondsia chinensis HOM05D006321 ORTHO05D007929 7.3e-73 277.3 161 75.2
Rhsim01G0118600 Rhododendron simsii HOM05D006321 ORTHO05D007929 2.1e-72 275.8 161 74.5
CiPaw.08G033200 Carya illinoinensis HOM05D006321 ORTHO05D007929 6.2e-72 274.2 161 75.8
Duzib251G0486 Durio zibethinus HOM05D006321 ORTHO05D007929 6.2e-72 274.2 162 77.2
VMungo0540G0928 Vigna mungo HOM05D006321 ORTHO05D007929 6.2e-72 274.2 161 75.8
Glyma.01G110600 Glycine max HOM05D006321 ORTHO05D007929 1.1e-71 273.5 161 75.8
CSS0046955 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 1.4e-71 273.1 159 75.5
TWI60G1509 Tripterygium wilfordii HOM05D006321 ORTHO05D007929 3.1e-71 271.9 161 77.0
CSS0021189 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 4.0e-71 271.6 159 75.5
QL02p047686 Quercus lobata HOM05D006321 ORTHO05D007929 5.2e-71 271.2 160 73.1
Cc06_g21570 Coffea canephora HOM05D006321 ORTHO05D007929 8.9e-71 270.4 161 74.5
Gohir.A06G171500 Gossypium hirsutum HOM05D006321 ORTHO05D007929 8.9e-71 270.4 159 76.1
Gorai.010G210200 Gossypium raimondii HOM05D006321 ORTHO05D007929 8.9e-71 270.4 159 76.1
CSS0019729 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 1.2e-70 270.0 159 75.5
MBI17_g07973_MAGBIO Magnolia biondii HOM05D006321 ORTHO05D007929 1.2e-70 270.0 161 74.5
Potri.018G143500 Populus trichocarpa HOM05D006321 ORTHO05D007929 1.2e-70 270.0 157 76.4
Thecc.09G184700 Theobroma cacao HOM05D006321 ORTHO05D007929 1.2e-70 270.0 156 76.9
Ciclev10008911m.g Citrus clementina HOM05D006321 ORTHO05D007929 1.5e-70 269.6 160 74.4
MSTRG.10445 Avicennia marina HOM05D006321 ORTHO05D007929 2.0e-70 269.2 161 77.0
Glyma.03G076300 Glycine max HOM05D006321 ORTHO05D007929 2.0e-70 269.2 161 73.9
Phvul.006G013600 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 2.6e-70 268.9 161 74.5
Gohir.D06G179600 Gossypium hirsutum HOM05D006321 ORTHO05D007929 3.4e-70 268.5 159 75.5
Manes.02G106300 Manihot esculenta HOM05D006321 ORTHO05D007929 5.8e-70 267.7 161 74.5
EL10Ac5g11827 Beta vulgaris HOM05D006321 ORTHO05D007929 9.9e-70 266.9 161 73.3
arahy.Tifrunner.gnm1.ann1.CI6UTV Arachis hypogaea HOM05D006321 ORTHO05D007929 1.3e-69 266.5 160 73.8
Phvul.003G138800 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 2.2e-69 265.8 161 73.3
Phvul.003G139178 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 2.2e-69 265.8 161 73.3
GSVIVG01010872001 Vitis vinifera HOM05D006321 ORTHO05D007929 2.2e-69 265.8 155 75.5
BcaC04g19986 Brassica carinata HOM05D006321 ORTHO05D007929 2.9e-69 265.4 161 72.0
A10p14640 Brassica napus HOM05D006321 ORTHO05D007929 2.9e-69 265.4 161 71.4
BraA10t43551Z Brassica rapa HOM05D006321 ORTHO05D007929 2.9e-69 265.4 161 71.4
AUR62030694 Chenopodium quinoa HOM05D006321 ORTHO05D007929 2.9e-69 265.4 161 72.0
TAR622G0244 Trochodendron aralioides HOM05D006321 ORTHO05D007929 2.9e-69 265.4 161 73.3
Thhalv10014893m.g Eutrema salsugineum HOM05D006321 ORTHO05D007929 3.8e-69 265.0 161 71.4
Potri.006G076300 Populus trichocarpa HOM05D006321 ORTHO05D007929 3.8e-69 265.0 157 74.5
CARHR271020 Cardamine hirsuta HOM05D006321 ORTHO05D007929 4.9e-69 264.6 161 70.2
Sp6g18970 Schrenkiella parvula HOM05D006321 ORTHO05D007929 4.9e-69 264.6 161 71.4
AUR62030699 Chenopodium quinoa HOM05D006321 ORTHO05D007929 6.4e-69 264.2 161 71.4
RcHm_v2.0_Chr4g0399821 Rosa chinensis HOM05D006321 ORTHO05D007929 6.4e-69 264.2 158 75.3
Carub.0008s1773 Capsella rubella HOM05D006321 ORTHO05D007929 8.4e-69 263.8 161 70.8
Lalb_Chr04g0263391 Lupinus albus HOM05D006321 ORTHO05D007929 8.4e-69 263.8 160 73.1
Medtr3g465100 Medicago truncatula HOM05D006321 ORTHO05D007929 8.4e-69 263.8 161 72.7
Prupe.1G076700 Prunus persica HOM05D006321 ORTHO05D007929 8.4e-69 263.8 158 74.1
AL8G33200 Arabidopsis lyrata HOM05D006321 ORTHO05D007929 1.1e-68 263.5 161 70.2
FvH4_4g07380 Fragaria vesca HOM05D006321 ORTHO05D007929 1.1e-68 263.5 157 75.2
FAN12G2844 Fragaria x ananassa HOM05D006321 ORTHO05D007929 1.1e-68 263.5 157 75.2
FAN22G1279 Fragaria x ananassa HOM05D006321 ORTHO05D007929 1.1e-68 263.5 157 75.2
COL.COLO4_07534 Corchorus olitorius HOM05D006321 ORTHO05D007929 1.4e-68 263.1 151 78.1
Eucgr.C00122 Eucalyptus grandis HOM05D006321 ORTHO05D007929 1.4e-68 263.1 157 72.6
Aqoxy3G01064 Aquilegia oxysepala HOM05D006321 ORTHO05D007929 2.4e-68 262.3 161 71.4
BcaB08g36085 Brassica carinata HOM05D006321 ORTHO05D007929 3.2e-68 261.9 161 70.8
AT5G57230 Arabidopsis thaliana HOM05D006321 ORTHO05D007929 4.1e-68 261.5 161 69.6
arahy.Tifrunner.gnm1.ann1.N3I1N2 Arachis hypogaea HOM05D006321 ORTHO05D007929 4.1e-68 261.5 152 77.0
Psat4g027120 Pisum sativum HOM05D006321 ORTHO05D007929 5.4e-68 261.2 161 70.8
Migut.L01889 Erythranthe guttata HOM05D006321 ORTHO05D007929 7.1e-68 260.8 157 74.5
Psat2g182520 Pisum sativum HOM05D006321 ORTHO05D004512 7.1e-68 260.8 160 70.6
Ca_14974_v3 Cicer arietinum L. HOM05D006321 ORTHO05D007929 1.2e-67 260.0 161 72.0
FAN07G2214 Fragaria x ananassa HOM05D006321 ORTHO05D007929 1.2e-67 260.0 154 75.3
THA.LOC104817778 Tarenaya hassleriana HOM05D006321 ORTHO05D007929 1.2e-67 260.0 162 71.6
Sed0024765 Sechium edule HOM05D006321 ORTHO05D007929 1.6e-67 259.6 154 72.7
PSO339G6079 Papaver somniferum HOM05D006321 ORTHO05D007929 2.7e-67 258.8 162 74.1
PGR142G1933 Punica granatum HOM05D006321 ORTHO05D007929 2.7e-67 258.8 157 75.2
Aa31LG3G13120 Aethionema arabicum HOM05D006321 ORTHO05D007929 6.0e-67 257.7 161 70.2
C09p49090 Brassica napus HOM05D006321 ORTHO05D007929 1.0e-66 256.9 169 68.0
Lj6g0010246 Lotus japonicus HOM05D006321 ORTHO05D007929 1.0e-66 256.9 161 73.3
SGA_v2.0_scaffold21G09650 Striga asiatica HOM05D006321 ORTHO05D007929 1.0e-66 256.9 157 73.2
TPR.G32885 Trifolium pratense HOM05D006321 ORTHO05D007929 1.0e-66 256.9 161 71.4
HPP92_002000 Vanilla planifolia HOM05D006321 ORTHO05D007929 1.0e-66 256.9 159 71.1
BolC9t57758H Brassica oleracea HOM05D006321 ORTHO05D007929 3.0e-66 255.4 165 68.5
MELO3C012967.2 Cucumis melo HOM05D006321 ORTHO05D007929 3.9e-66 255.0 154 72.1
CsaV3_3G025050 Cucumis sativus L. HOM05D006321 ORTHO05D007929 8.6e-66 253.8 154 72.1
PSO384G3851 Papaver somniferum HOM05D006321 ORTHO05D007929 3.3e-65 251.9 162 71.6
CANSAT11G0316 Cannabis sativa HOM05D006321 ORTHO05D007929 5.6e-65 251.1 162 69.8
Ah.12g059430 Amaranthus hybridus HOM05D006321 ORTHO05D007929 1.2e-64 250.0 156 73.1
Hund14984 Selenicereus undatus HOM05D006321 ORTHO05D007929 6.2e-64 247.7 210 57.1
MD16G1249800 Malus domestica HOM05D006321 ORTHO05D007929 5.2e-63 244.6 148 74.3
Actinidia01283 Actinidia chinensis HOM05D006321 ORTHO05D007929 1.5e-62 243.0 161 70.2
Os06g0482200 Oryza sativa ssp. japonica HOM05D006321 ORTHO05D007929 2.2e-61 239.2 155 67.1
Os10g0162834 Oryza sativa ssp. japonica HOM05D006321 ORTHO05D007929 3.8e-61 238.4 155 67.1
CDE06G2300 Ceratophyllum demersum HOM05D006321 ORTHO05D007929 1.1e-60 236.9 140 75.7
Sopen07g004840 Solanum pennellii HOM05D003168 ORTHO05D003590 1.9e-60 236.1 135 76.3
unitig_736.g22252 Utricularia gibba HOM05D006321 ORTHO05D007929 3.2e-60 235.3 138 76.1
Cpa.g.sc95.16 Carica papaya HOM05D006321 ORTHO05D007929 1.6e-59 233.0 161 65.8
Nn2g12444 Nelumbo nucifera HOM05D006321 ORTHO05D007929 2.7e-59 232.3 135 75.6
Zm00001eb161640 Zea mays HOM05D006321 ORTHO05D007929 4.6e-59 231.5 152 66.4
AUR62036340 Chenopodium quinoa HOM05D006321 ORTHO05D007929 1.9e-57 226.1 135 72.6
MD13G1243200 Malus domestica HOM05D006321 ORTHO05D007929 3.3e-57 225.3 138 71.0
SEGI_34333 Sequoiadendron giganteum HOM05D006321 ORTHO05D007929 1.6e-56 223.0 157 63.7
Haze_22010 Corylus avellana HOM05D006321 ORTHO05D007929 2.0e-54 216.1 152 65.8
Sabra18G0117000 Salix brachista HOM05D003168 ORTHO05D003525 1.2e-51 206.8 128 72.7
Oeu044678.1 Olea europaea HOM05D006321 ORTHO05D007929 3.5e-51 205.3 114 78.1
Psat5g235880 Pisum sativum HOM05D006321 ORTHO05D007929 6.0e-51 204.5 140 65.0
Migut.G01073 Erythranthe guttata HOM05D006321 ORTHO05D007929 5.1e-50 201.4 116 77.6
vmacro20823 Vaccinium macrocarpon HOM05D006321 ORTHO05D007929 6.7e-50 201.1 114 74.6
Oeu030095.1 Olea europaea HOM05D006321 ORTHO05D007929 8.7e-50 200.7 115 77.4
Mapoly0003s0233 Marchantia polymorpha HOM05D006321 ORTHO05D007929 2.1e-48 196.1 142 58.5
Pp3c22_13020 Physcomitrium patens HOM05D006321 ORTHO05D007929 1.4e-47 193.4 145 57.2
Sabra06G0057200 Salix brachista HOM05D006321 ORTHO05D007929 1.4e-47 193.4 188 50.5
Mapoly0003s0169 Marchantia polymorpha HOM05D006321 ORTHO05D007929 2.6e-46 189.1 142 57.0
FAN17G2672 Fragaria x ananassa HOM05D006321 ORTHO05D007929 7.6e-46 187.6 157 58.6
PSO541G2755 Papaver somniferum HOM05D006321 ORTHO05D007929 7.6e-46 187.6 114 72.8
Peaxi162Scf00324g00017 Petunia axillaris HOM05D006321 ORTHO05D007929 1.3e-45 186.8 157 57.3
ATR1152G025 Amborella trichopoda HOM05D006321 ORTHO05D007929 2.3e-42 176.0 96 78.1
Aqoxy108s003 Aquilegia oxysepala HOM05D006321 ORTHO05D007929 2.3e-42 176.0 138 60.9
Lj6A87G16 Lonicera japonica HOM05D006321 ORTHO05D007929 1.5e-41 173.3 95 76.8
DCAR_005801 Daucus carota HOM05D006321 ORTHO05D007929 2.5e-41 172.6 101 76.2
CBR_g19745 Chara braunii HOM05D006321 ORTHO05D007929 8.4e-37 157.5 171 48.0
COL.COLO4_32845 Corchorus olitorius HOM05D006321 ORTHO05D007929 7.1e-36 154.5 85 81.2
Dinv41168 Davidia involucrata HOM05D000015 ORTHO05D003525 2.5e-33 146.0 86 75.6
BcaB05g22329 Brassica carinata HOM05D006321 ORTHO05D007929 3.3e-33 145.6 157 47.8
TAR629G2308 Trochodendron aralioides HOM05D006321 ORTHO05D007929 1.3e-32 143.7 135 53.3
Lj6A100T20 Lonicera japonica HOM05D006321 ORTHO05D007929 4.6e-27 125.2 73 74.0
Sopen00g012850 Solanum pennellii HOM05D006321 ORTHO05D007929 6.3e-16 88.2 57 64.9
BolC2t07570H Brassica oleracea HOM05D006321 ORTHO05D007929 1.9e-12 76.6 60 55.0


User provided reference genes

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