Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0529021 Helianthus annuus HOM05D007549 ORTHO05D009532 6.5e-37 156.8 73 100.0
HanXRQChr00c0314g0573541 Helianthus annuus HOM05D007549 ORTHO05D009532 5.0e-21 104.0 47 100.0
HanXRQChr01g0020311 Helianthus annuus HOM05D007549 ORTHO05D009532 5.0e-21 104.0 47 100.0
HanXRQChr02g0041601 Helianthus annuus HOM05D007549 ORTHO05D009532 5.0e-21 104.0 47 100.0
HanXRQChr02g0044861 Helianthus annuus HOM05D007549 ORTHO05D009532 5.0e-21 104.0 47 100.0
HanXRQChr10g0284281 Helianthus annuus HOM05D007549 ORTHO05D009532 5.0e-21 104.0 47 100.0
HanXRQChr10g0289301 Helianthus annuus HOM05D007549 ORTHO05D009532 5.0e-21 104.0 47 100.0
HanXRQChr10g0318161 Helianthus annuus HOM05D007549 ORTHO05D009532 5.0e-21 104.0 47 100.0
HanXRQChr11g0326871 Helianthus annuus HOM05D007549 ORTHO05D009532 5.0e-21 104.0 47 100.0
HanXRQChr11g0345191 Helianthus annuus HOM05D007549 ORTHO05D009532 5.0e-21 104.0 47 100.0
HanXRQCPg0580081 Helianthus annuus HOM05D007549 ORTHO05D009532 5.0e-21 104.0 47 100.0
HanXRQChr04g0095131 Helianthus annuus HOM05D007549 ORTHO05D009532 1.5e-20 102.4 47 97.9
MELO3C001514.2 Cucumis melo HOM05D007549 ORTHO05D009532 4.2e-20 100.9 73 72.6
Gohir.1Z050480 Gossypium hirsutum HOM05D007549 ORTHO05D009532 9.5e-20 99.8 47 95.7
Gohir.A09G103600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 9.5e-20 99.8 47 95.7
PGR111G0018 Punica granatum HOM05D007549 ORTHO05D009532 3.6e-19 97.8 46 95.7
Gohir.D02G088100 Gossypium hirsutum HOM05D007549 ORTHO05D009532 4.7e-19 97.4 47 93.6
Ciclev10033989m.g Citrus clementina HOM05D007549 ORTHO05D009532 8.0e-19 96.7 47 91.5
Gohir.D12G108000 Gossypium hirsutum HOM05D007549 ORTHO05D009532 8.0e-19 96.7 47 93.6
HanXRQChr00c0339g0573821 Helianthus annuus HOM05D007549 ORTHO05D009532 1.4e-18 95.9 42 100.0
HanXRQChr10g0283591 Helianthus annuus HOM05D007549 ORTHO05D009532 1.4e-18 95.9 42 100.0
Nn021s41532 Nelumbo nucifera HOM05D007549 ORTHO05D009532 1.4e-18 95.9 47 91.5
EL10As12g24029 Beta vulgaris HOM05D007549 ORTHO05D009532 2.3e-18 95.1 72 66.7
EL10As15g24130 Beta vulgaris HOM05D007549 ORTHO05D009532 2.3e-18 95.1 72 66.7
DCAR_032505 Daucus carota HOM05D007549 ORTHO05D009532 2.3e-18 95.1 47 89.4
Gohir.A10G214800 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.3e-18 95.1 47 91.5
HanXRQChr02g0052591 Helianthus annuus HOM05D007549 ORTHO05D009532 2.3e-18 95.1 47 91.5
Sed0011532 Sechium edule HOM05D007549 ORTHO05D009532 3.0e-18 94.7 51 86.3
Sed0017373 Sechium edule HOM05D007549 ORTHO05D009532 3.0e-18 94.7 51 86.3
Sed0021629 Sechium edule HOM05D007549 ORTHO05D009532 3.0e-18 94.7 51 86.3
Sed0025178 Sechium edule HOM05D007549 ORTHO05D009532 3.0e-18 94.7 51 86.3
CsaV3_7G024610 Cucumis sativus L. HOM05D007549 ORTHO05D009532 6.8e-18 93.6 51 84.3
RcHm_v2.0_CPg0502021 Rosa chinensis HOM05D007549 ORTHO05D009532 8.9e-18 93.2 47 91.5
CARHR282150 Cardamine hirsuta HOM05D007549 ORTHO05D009532 1.2e-17 92.8 47 87.2
AL2G21610 Arabidopsis lyrata HOM05D007549 ORTHO05D009532 1.5e-17 92.4 47 87.2
A06p23130 Brassica napus HOM05D007549 ORTHO05D009532 1.5e-17 92.4 47 87.2
BNapus_Darmor_BZH_scaffold_253p00240 Brassica napus HOM05D007549 ORTHO05D009532 1.5e-17 92.4 47 87.2
BNapus_Darmor_BZH_scaffold_287p00180 Brassica napus HOM05D007549 ORTHO05D009532 1.5e-17 92.4 47 87.2
C02p43570 Brassica napus HOM05D007549 ORTHO05D009532 1.5e-17 92.4 47 87.2
C06p22970 Brassica napus HOM05D007549 ORTHO05D009532 1.5e-17 92.4 47 87.2
C06p23020 Brassica napus HOM05D007549 ORTHO05D009532 1.5e-17 92.4 47 87.2
BolC8t52432H Brassica oleracea HOM05D007549 ORTHO05D009532 1.5e-17 92.4 47 87.2
BolSC29t60475H Brassica oleracea HOM05D007549 ORTHO05D009532 1.5e-17 92.4 47 87.2
BolSC29t60596H Brassica oleracea HOM05D007549 ORTHO05D009532 1.5e-17 92.4 47 87.2
BolSC35t60656H Brassica oleracea HOM05D007549 ORTHO05D009532 1.5e-17 92.4 47 87.2
BolSC35t60741H Brassica oleracea HOM05D007549 ORTHO05D009532 1.5e-17 92.4 47 87.2
BolSC47t61088H Brassica oleracea HOM05D007549 ORTHO05D009532 1.5e-17 92.4 47 87.2
BraA06t25416Z Brassica rapa HOM05D007549 ORTHO05D009532 1.5e-17 92.4 47 87.2
BraSC138t45567Z Brassica rapa HOM05D007549 ORTHO05D009532 1.5e-17 92.4 47 87.2
BraSC25t45857Z Brassica rapa HOM05D007549 ORTHO05D009532 1.5e-17 92.4 47 87.2
BraSC58t46491Z Brassica rapa HOM05D007549 ORTHO05D009532 1.5e-17 92.4 47 87.2
ATCG00640 Arabidopsis thaliana HOM05D007549 ORTHO05D009532 3.4e-17 91.3 47 85.1
Solyc09g064410.1 Solanum lycopersicum HOM05D007549 ORTHO05D009532 4.4e-17 90.9 47 87.2
Gohir.A06G124600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 5.7e-17 90.5 47 87.2
Gohir.D11G296624 Gossypium hirsutum HOM05D007549 ORTHO05D009532 5.7e-17 90.5 74 63.5
Gorai.007G320000 Gossypium raimondii HOM05D007549 ORTHO05D009532 5.7e-17 90.5 74 63.5
BolC9t53163H Brassica oleracea HOM05D007549 ORTHO05D009532 7.5e-17 90.1 47 85.1
BolSC49t61174H Brassica oleracea HOM05D007549 ORTHO05D009532 7.5e-17 90.1 47 85.1
CAN.G1148.11 Capsicum annuum HOM05D007549 ORTHO05D009532 7.5e-17 90.1 47 87.2
CAN.G1314.5 Capsicum annuum HOM05D007549 ORTHO05D009532 7.5e-17 90.1 47 87.2
CAN.G2018.15 Capsicum annuum HOM05D007549 ORTHO05D009532 7.5e-17 90.1 47 87.2
CAN.G2018.7 Capsicum annuum HOM05D007549 ORTHO05D009532 7.5e-17 90.1 47 87.2
CAN.G438.85 Capsicum annuum HOM05D007549 ORTHO05D009532 7.5e-17 90.1 47 87.2
CAN.G3365.3 Capsicum annuum HOM05D007549 ORTHO05D009532 9.8e-17 89.7 47 85.1
PSO548G0033 Papaver somniferum HOM05D007549 ORTHO05D009532 1.3e-16 89.4 47 85.1
Potri.003G067400 Populus trichocarpa HOM05D007549 ORTHO05D009532 1.3e-16 89.4 45 88.9
BolC2t08912H Brassica oleracea HOM05D007549 ORTHO05D009532 2.2e-16 88.6 47 85.1
BolC6t36197H Brassica oleracea HOM05D007549 ORTHO05D009532 2.2e-16 88.6 47 83.0
ClCG11G009530 Citrullus lanatus HOM05D007549 ORTHO05D009532 8.3e-16 86.7 46 84.8
HanXRQChr11g0331601 Helianthus annuus HOM05D007549 ORTHO05D009532 8.3e-16 86.7 46 82.6
CAN.G452.5 Capsicum annuum HOM05D007549 ORTHO05D009532 1.4e-15 85.9 47 85.1
Lj1g0000802 Lotus japonicus HOM05D007549 ORTHO05D009532 5.4e-15 84.0 45 84.4
LjContig00318g0016693 Lotus japonicus HOM05D007549 ORTHO05D009532 5.4e-15 84.0 45 84.4
BolC4t25867H Brassica oleracea HOM05D007549 ORTHO05D009532 7.0e-15 83.6 45 82.2
Lalb_Chr07g0192081 Lupinus albus HOM05D007549 ORTHO05D009532 9.2e-15 83.2 48 79.2
Lalb_Chr20g0115511 Lupinus albus HOM05D007549 ORTHO05D009532 9.2e-15 83.2 48 79.2
TPR.G34467 Trifolium pratense HOM05D007549 ORTHO05D009532 9.2e-15 83.2 55 70.9
Medtr8g045210 Medicago truncatula HOM05D007549 ORTHO05D009532 1.2e-14 82.8 43 86.0
Oeu062831.1 Olea europaea HOM05D007549 ORTHO05D009532 1.6e-14 82.4 47 83.0
Glyma.12G232300 Glycine max HOM05D007549 ORTHO05D009532 2.7e-14 81.6 45 84.4
Glyma.15G239000 Glycine max HOM05D007549 ORTHO05D009532 3.5e-14 81.3 45 82.2
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 1.3e-13 79.3 39 89.7
ClCG02G007770 Citrullus lanatus HOM05D007549 ORTHO05D009532 1.7e-13 79.0 42 88.1
Lj5g0014355 Lotus japonicus HOM05D007549 ORTHO05D009532 1.7e-13 79.0 45 82.2
arahy.Tifrunner.gnm1.ann1.JD40MT Arachis hypogaea HOM05D007549 ORTHO05D009532 8.0e-11 70.1 39 82.1
Lalb_Chr23g0274441 Lupinus albus HOM05D007549 ORTHO05D009532 5.2e-10 67.4 47 70.2
Gohir.D07G173850 Gossypium hirsutum HOM05D007549 ORTHO05D009532 6.8e-10 67.0 35 80.0
Gorai.001G194300 Gossypium raimondii HOM05D007549 ORTHO05D009532 2.0e-09 65.5 35 80.0
HanXRQChr00c0557g0575791 Helianthus annuus HOM05D007549 ORTHO05D009532 2.0e-09 65.5 31 96.8
MCO12G297 Micromonas commoda HOM05D007549 ORTHO05D009532 1.1e-07 59.7 49 55.1
Gorai.010G129600 Gossypium raimondii HOM05D007549 ORTHO05D009532 7.0e-07 57.0 47 61.7
Gohir.A07G175856 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.6e-06 55.8 47 63.8
PRCOL_00001223 Prasinoderma coloniale HOM05D007549 ORTHO05D009532 2.7e-06 55.1 38 63.2
Gohir.D06G113650 Gossypium hirsutum HOM05D007549 ORTHO05D009532 3.5e-06 54.7 47 59.6


User provided reference genes

Program Settings